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Oryza sativa
cluster # 8670 cluster # 8670       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8670#0 length = 2737 sequences # 3  
consensus_8670#1 length = 419 sequences # 1  
consensus_8670#2 length = 149 sequences # 1  

consensusID : consensus_8670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2737
fasta sequence
                              [TCTCGGCTCTGCGATCTTAATTTCCCCGCGCCGCCGCCGCCGACGCCGCCGCCGATCTCGCGCGCCGCCGCTCCCGCCGTTCCCGGCGAACGTCGCGCCTGATACTTCTCGAGAGCCTCGATCGCCCCAGGCTCCTTCCCCCTCTTGGGAGATTCATCGTTTTGTACTAAGCAGCGGCCATATGGAGATACTGGAGGTGCCCGTCCAGCCGCCGCCGCGAATAGGTAATGGAGCTACTTCTTCAGCTTCTGAAATAGACAACTCCCCTTGTCAATGTGGCGATGATTCTCAATCTGCCAGTACAGTGGAATCCAAGATGCAGCTTCCAGAGGACATCCTTTATCACATACACACTCTCATGCCTATGCAGGATGCAGCTCGTGCCGCCTGTGCATCTCGTTGTTTTCTGCGTTCTTGGAGATTCTACCCCAGGCTCAATCTTAATGTTAATACACTACGCATAGATAAGAGAGCACCTAGCAATGATAAACTAACAATTGATTTCATCAGTAGAGTCGACCCCATTATGCTGAATCATGCTGGCACAGGAGTGAAGATGTTTAAACTTACAACCCACCCTTGTTTCAGTCTGCATCCTAGTTATGTTGACCGCTGGCTTCAAATTGCGTTTGCACCAGGAATCAAAGAATTTGAACTAGAAATGACCCGAGTTAGCAAGATGGATTATGATTTCCCATGCTCACTTCTATCAAGGGTAGCAAGCTCAATTCAGTCTTTTTTACTTGGTGGCTGTTCTTTCCACCCTGGCATACAAATTGGTCAGATGAGTACCTTGACAAGTTTGCGTTTAAGATCAGTAAAAATTACTGAGGAGGAATTATGCGGCTTTCTATCCAAATCCTGTGCTTTGCAGCGATTGTTACTTTCAGACTGCCATAATATTGTTGTCCTGAAGATCCCCCATCTGCTGGAGCTTAATTACCTGGAAGTGTTGCATTTTAGAAAATTGGAGGTGATTGACAGTAGTGCTCCAAAGCTCTCTACTTTCATCTATGCTGGCCCCCCAATACAAATCTCACTTGGAGAAGCATTATTACAAGTGAAGAAAATGCAAATGTTTTGTGACGGAAGCCCTGACGCGCTACATTATGGTAGCAAGAAGCTTCCATCCATTGCGCCAAACATACAGAAGCTTTATCTATCAACACGTAATGAGACAGTCAATACACCAAAGGTACTTGGCAAATTCCTGCAGCTCAAGTGCTTGGAGATACTGCTGCTTACACCAGATTTGTCCCCGGGCTATGATTTTTGTTCTCTGGTTTCCTTCATTGATGCTTCTCCTGCCTTGGAGACTTTTATCCTGCGTGTAAGTTATTATTTATATGTCAAAGCTATCTATCATTTATCAGGTACCACTTATGTTCAAGATTTTATTGTTTTCTCTTAAAGAATTATTTGTTATGATGTTTCATGCAAATGTTTTTTGTTATTTCTTGAATTGGACAAATGTAACATTTCTTTGTTCTGCAAATGATGCAACTGATCTCATATGTACTATCTTAAAAGACGCTTACTGGTGGTGGTTGCCACCCAATTACCATGTGGTCCACGAACAATCAGACAAGACTTTGTCTAGGGATGCAAGTGGGTAGTCTCACTACCCGCATAAAAACCCGCTTACTACTTCATTTTTCATATGGTAGCACAAAATTTAGAAGAAAAAATGAACTACAAGTGAGATAAGCGGGCTAAAAACACCCGCTTGCCCGCCCCGCTTGCATCCCTATCTTTATCTGACCCCTATGGCTAACTCAACTGACACCTACAAAGTGGCAGCAAAATTGGCATGATGATAATATAATTTTTATGGGCTTTAAAATATATGTGATGAGCTTTCTTTAAAAAAATAAAAACGTTGCAACTCTAGTAATAAATATTGACACTATTGATGGCCTTGATAAACTTTGCAACTAAATTACTTGCCTTGATCACTATCCTATTCCTATAAAGTAGTAGCTAAATAAAAGAGGGAGAGAATTAATATGGCTAACTTTTATTCAGTACCTTTTGCTCATTAAAAAAAAAGCAGACATTGACGTAATCCTTTGCAGATTGAACGGCCAGCTAAAAGACATGATTCGATCCTTGAAGCATTGAGTGGTGACT-CCAT-GCA-TCCAATGCGTGCTTCAGAATACCGCCATGACAATCTCAAGAACATGATGATAACCGGTTTTTCCTCTGCAAAGAGCATGATCGATCTTGCCAACCACATTCTCGAGAAGGCTTCGTCTCTAGAGTACCTTACATTGGACACCA-CCCGTGGCTATGACA-GGAGAAATGACAAGATTGACCCATGTCAATGTTTAC-AATGAGCAAGGAAGCTCTCTTGGAAGCTGAGAAGGCTCTCCTCGCTATTAGGATCTATGTTGAGGGGAGAGTACCCTCGAGTGTTAGCTTAAAGGTTATTGAGCCCTGCAGTAACTGCCACACTGAAACTAGAAGCTAATGATTTTGTGTGTAGAAAGTGTTGTTTCTGCCAGTTGCAAATACC-TTGCTCTCATGTATGCCTGCGTTTCAAC-ATGTTGTAACTTCATCTGTTCAAGTGATGGAAACCTATTTGAAGTTCTGACATGCTTCATGCCACATCTTATTGCTACTTAGCATACAGTTCAATTTTCCTACATAGTGATAAGGAATTTATATGTTCTGCATGATGGGCGAACAATCAATAAAAGGGAGAAATGACATTAGCGTGTGGCCTGTTTGAGAATGG]

[+] EMBL AK068214             [TCTCGGCTCTGCGATCTTAATTTCCCCGCGCCGCCGCCGCCGACGCCGCCGCCGATCTCGCGCGCCGCCGCTCCCGCCGTTCCCGGCGAACGTCGCGCCTGATACTTCTCGAGAGCCTCGATCGCCCCAGGCTCCTTCCCCCTCTTGGGAGATTCATCGTTTTGTACTAAGCAGCGGCCATATGGAGATACTGGAGGTGCCCGTCCAGCCGCCGCCGCGAATAGGTAATGGAGCTACTTCTTCAGCTTCTGAAATAGACAACTCCCCTTGTCAATGTGGCGATGATTCTCAATCTGCCAGTACAGTGGAATCCAAGATGCAGCTTCCAGAGGACATCCTTTATCACATACACACTCTCATGCCTATGCAGGATGCAGCTCGTGCCGCCTGTGCATCTCGTTGTTTTCTGCGTTCTTGGAGATTCTACCCCAGGCTCAATCTTAATGTTAATACACTACGCATAGATAAGAGAGCACCTAGCAATGATAAACTAACAATTGATTTCATCAGTAGAGTCGACCCCATTATGCTGAATCATGCTGGCACAGGAGTGAAGATGTTTAAACTTACAACCCACCCTTGTTTCAGTCTGCATCCTAGTTATGTTGACCGCTGGCTTCAAATTGCGTTTGCACCAGGAATCAAAGAATTTGAACTAGAAATGACCCGAGTTAGCAAGATGGATTATGATTTCCCATGCTCACTTCTATCAAGGGTAGCAAGCTCAATTCAGTCTTTTTTACTTGGTGGCTGTTCTTTCCACCCTGGCATACAAATTGGTCAGATGAGTACCTTGACAAGTTTGCGTTTAAGATCAGTAAAAATTACTGAGGAGGAATTATGCGGCTTTCTATCCAAATCCTGTGCTTTGCAGCGATTGTTACTTTCAGACTGCCATAATATTGTTGTCCTGAAGATCCCCCATCTGCTGGAGCTTAATTACCTGGAAGTGTTGCATTTTAGAAAATTGGAGGTGATTGACAGTAGTGCTCCAAAGCTCTCTACTTTCATCTATGCTGGCCCCCCAATACAAATCTCACTTGGAGAAGCATTATTACAAGTGAAGAAAATGCAAATGTTTTGTGACGGAAGCCCTGACGCGCTACATTATGGTAGCAAGAAGCTTCCATCCATTGCGCCAAACATACAGAAGCTTTATCTATCAACACGTAATGAGACAGTCAATACACCAAAGGTACTTGGCAAATTCCTGCAGCTCAAGTGCTTGGAGATACTGCTGCTTACACCAGATTTGTCCCCGGGCTATGATTTTTGTTCTCTGGTTTCCTTCATTGATGCTTCTCCTGCCTTGGAGACTTTTATCCTGCGTGTAAGTTATTATTTATATGTCAAAGCTATCTATCATTTATCAGGTACCACTTATGTTCAAGATTTTATTGTTTTCTCTTAAAGAATTATTTGTTATGATGTTTCATGCAAATGTTTTTTGTTATTTCTTGAATTGGACAAATGTAACATTTCTTTGTTCTGCAAATGATGCAACTGATCTCATATGTACTATCTTAAAAGACGCTTACTGGTGGTGGTTGCCACCCAATTACCATGTGGTCCACGAACAATCAGACAAGACTTTGTCTAGGGATGCAAGTGGGTAGTCTCACTACCCGCATAAAAACCCGCTTACTACTTCATTTTTCATATGGTAGCACAAAATTTAGAAGAAAAAATGAACTACAAGTGAGATAAGCGGGCTAAAAACACCCGCTTGCCCGCCCCGCTTGCATCCCTATCTTTATCTGACCCCTATGGCTAACTCAACTGACACCTACAAAGTGGCAGCAAAATTGGCATGATGATAATATAATTTTTATGGGCTTTAAAATATATGTGATGAGCTTTCTTTAAAAAAATAAAAACGTTGCAACTCTAGTAATAAATATTGACACTATTGATGGCCTTGATAAACTTTGCAACTAAATTACTTGCCTTGATCACTATCCTATTCCTATAAAGTAGTAGCTAAATAAAAGAGGGAGAGAATTAATATGGCTAACTTTTATTCAGTACCTTTTGCTCATTAAAAAAAAAGCAGACATTGACGTAATCCTTTGCAGATTGAACGGCCAGCTAAAAGACATGATTCGATCCTTGAAGCATTGAGTGGTGACT CCAT GCA TCCAATGCGTGCTTCAGAATACCGCCATGACAATCTCAAGAACATGATGATAACCGGTTTTTCCTCTGCAAAGAGCATGATCGATCTTGCCAACCACATTCTCGAGAAGGCTTCGTCTCTAGAGTACCTTACATTGGACACCA CCCGTGGCTATGACA GGAGAAATGACAAGATTGACCCATGTCAATGTTTACAAATGAGCAAGGAAGCTCTCTTGGAAGCTGAGAAGGCTCTCCTCGCTATTAGGATCTATGTTGAGGGGAGAGTACCCTCGAGTGTTAGCTTAAAGGTTATTGAGCCCTGCAGTAACTGCCACACTGAAACTAGAAGCTAATGATTTTGTGTGTAGAAAGTGTTGTTTCTGCCAGTTGCAAATACCATTGCTCTCATGTATGCCTGCGTTTCAACAATGTTGTAACTTCATCTGTTCAAGTGATGGAAACCTATTTGAAGTTCTGACATGCTTCATGCCACATCTTATTGCTACTTAGCATACAGTTCAATTTTCCTACATAGTGATAAGGAATTTATATGTTCTGCATGATGGGCGAACAATCAATAAAAGGGAGAAATGACATTAGCGTGTGGCCTGTTTGAGAATGG]
[+] EMBL BM038486             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGGTGACTCCCATGGCACTCCAATGCGTGCTTCAGAATCCCCCCATGNCAATCTCAAGAACATGATGATAACCGGTTTTTCCTCT CAAAGAGCATGATCGATCTT CCAACCACATTCTCGAGAAGGCTTCGTCTCTAGAGTACCTTACATTGGACACCACCCCGTGGCTATGACACGGAGAAATGACAAGATTGACCCATGTCAATGTTTAC AATGAGCAAGGAAGCTCTCTTGGAAGCTGAGAAGGCTCTCCTCGCTATTAGGATCTATGTTGAGGGGAGAGTACCCTCGAGTGTTAGCTTAAAGGTTATTGAGCCCT CAGTAACTGCCACCCTGAAACTAGAAGCTAATGATTTTGTGTGTAGAAAGTGTTGTTTCTCCCA TT CAAATACC TTGCTCTCATGTATGCCTGCGTTTCAAC ATGTTGTAACTTCATCTGTTCAAGTGATGGAAACCTATTTGAAGTTCaaaaaaaaa                                                                                                                                          ]
[+] EMBL BI808736             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAAGA CATGATCGATC TGCCCACCACATTCTCGAGAAGGCTTCGTCTCTAGAGTACCTTACATTGGACACCA CCCGTGGCTATGACA GGAGAAATGACAAGATTGACCCATGTCAATGTTTAC AATGAGCAAGGAAGCTCTCTTGGAAGCTGAGAAGGCTCTCCTCGCTATTAGGATCTATGTTGAGGGGAGAGTACCCTCGAGTGTTAGCTTAAAGGTTATTGAGCCCTGCAGTAACTGCCACACTGAAACTAGAAGCTAATGATTTTGTGTGTAGAAAGTGTTGTTTCTGCCAGTTGCAAATACC TTGCTCTCATGTATGCCTGCGTTTC AC ATGTTGTAACTTCATCTGTTCAAGTGATGGAAACCTATTTGAAGTTCTGACATGCTTCATGCCACATTTTATTGCTACTTAGCATACAGTTCAATTTTCCTACATAGTGATAAGGAATTTATATGTTCTGCATGATGGGCGAACAATCAATAAAAGGGAGAAATGACATTAaaaaaaaaa              ]


>consensus_8670#0 TCTCGGCTCTGCGATCTTAATTTCCCCGCGCCGCCGCCGCCGACGCCGCCGCCGATCTCG CGCGCCGCCGCTCCCGCCGTTCCCGGCGAACGTCGCGCCTGATACTTCTCGAGAGCCTCG ATCGCCCCAGGCTCCTTCCCCCTCTTGGGAGATTCATCGTTTTGTACTAAGCAGCGGCCA TATGGAGATACTGGAGGTGCCCGTCCAGCCGCCGCCGCGAATAGGTAATGGAGCTACTTC TTCAGCTTCTGAAATAGACAACTCCCCTTGTCAATGTGGCGATGATTCTCAATCTGCCAG TACAGTGGAATCCAAGATGCAGCTTCCAGAGGACATCCTTTATCACATACACACTCTCAT GCCTATGCAGGATGCAGCTCGTGCCGCCTGTGCATCTCGTTGTTTTCTGCGTTCTTGGAG ATTCTACCCCAGGCTCAATCTTAATGTTAATACACTACGCATAGATAAGAGAGCACCTAG CAATGATAAACTAACAATTGATTTCATCAGTAGAGTCGACCCCATTATGCTGAATCATGC TGGCACAGGAGTGAAGATGTTTAAACTTACAACCCACCCTTGTTTCAGTCTGCATCCTAG TTATGTTGACCGCTGGCTTCAAATTGCGTTTGCACCAGGAATCAAAGAATTTGAACTAGA AATGACCCGAGTTAGCAAGATGGATTATGATTTCCCATGCTCACTTCTATCAAGGGTAGC AAGCTCAATTCAGTCTTTTTTACTTGGTGGCTGTTCTTTCCACCCTGGCATACAAATTGG TCAGATGAGTACCTTGACAAGTTTGCGTTTAAGATCAGTAAAAATTACTGAGGAGGAATT ATGCGGCTTTCTATCCAAATCCTGTGCTTTGCAGCGATTGTTACTTTCAGACTGCCATAA TATTGTTGTCCTGAAGATCCCCCATCTGCTGGAGCTTAATTACCTGGAAGTGTTGCATTT TAGAAAATTGGAGGTGATTGACAGTAGTGCTCCAAAGCTCTCTACTTTCATCTATGCTGG CCCCCCAATACAAATCTCACTTGGAGAAGCATTATTACAAGTGAAGAAAATGCAAATGTT TTGTGACGGAAGCCCTGACGCGCTACATTATGGTAGCAAGAAGCTTCCATCCATTGCGCC AAACATACAGAAGCTTTATCTATCAACACGTAATGAGACAGTCAATACACCAAAGGTACT TGGCAAATTCCTGCAGCTCAAGTGCTTGGAGATACTGCTGCTTACACCAGATTTGTCCCC GGGCTATGATTTTTGTTCTCTGGTTTCCTTCATTGATGCTTCTCCTGCCTTGGAGACTTT TATCCTGCGTGTAAGTTATTATTTATATGTCAAAGCTATCTATCATTTATCAGGTACCAC TTATGTTCAAGATTTTATTGTTTTCTCTTAAAGAATTATTTGTTATGATGTTTCATGCAA ATGTTTTTTGTTATTTCTTGAATTGGACAAATGTAACATTTCTTTGTTCTGCAAATGATG CAACTGATCTCATATGTACTATCTTAAAAGACGCTTACTGGTGGTGGTTGCCACCCAATT ACCATGTGGTCCACGAACAATCAGACAAGACTTTGTCTAGGGATGCAAGTGGGTAGTCTC ACTACCCGCATAAAAACCCGCTTACTACTTCATTTTTCATATGGTAGCACAAAATTTAGA AGAAAAAATGAACTACAAGTGAGATAAGCGGGCTAAAAACACCCGCTTGCCCGCCCCGCT TGCATCCCTATCTTTATCTGACCCCTATGGCTAACTCAACTGACACCTACAAAGTGGCAG CAAAATTGGCATGATGATAATATAATTTTTATGGGCTTTAAAATATATGTGATGAGCTTT CTTTAAAAAAATAAAAACGTTGCAACTCTAGTAATAAATATTGACACTATTGATGGCCTT GATAAACTTTGCAACTAAATTACTTGCCTTGATCACTATCCTATTCCTATAAAGTAGTAG CTAAATAAAAGAGGGAGAGAATTAATATGGCTAACTTTTATTCAGTACCTTTTGCTCATT AAAAAAAAAGCAGACATTGACGTAATCCTTTGCAGATTGAACGGCCAGCTAAAAGACATG ATTCGATCCTTGAAGCATTGAGTGGTGACTCCATGCATCCAATGCGTGCTTCAGAATACC GCCATGACAATCTCAAGAACATGATGATAACCGGTTTTTCCTCTGCAAAGAGCATGATCG ATCTTGCCAACCACATTCTCGAGAAGGCTTCGTCTCTAGAGTACCTTACATTGGACACCA CCCGTGGCTATGACAGGAGAAATGACAAGATTGACCCATGTCAATGTTTACAATGAGCAA GGAAGCTCTCTTGGAAGCTGAGAAGGCTCTCCTCGCTATTAGGATCTATGTTGAGGGGAG AGTACCCTCGAGTGTTAGCTTAAAGGTTATTGAGCCCTGCAGTAACTGCCACACTGAAAC TAGAAGCTAATGATTTTGTGTGTAGAAAGTGTTGTTTCTGCCAGTTGCAAATACCTTGCT CTCATGTATGCCTGCGTTTCAACATGTTGTAACTTCATCTGTTCAAGTGATGGAAACCTA TTTGAAGTTCTGACATGCTTCATGCCACATCTTATTGCTACTTAGCATACAGTTCAATTT TCCTACATAGTGATAAGGAATTTATATGTTCTGCATGATGGGCGAACAATCAATAAAAGG GAGAAATGACATTAGCGTGTGGCCTGTTTGAGAATGG



consensusID : consensus_8670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence
                              [ATAACCGGTTTTTCCTCGCAAAGAGCATGATCGATCTTGCCCAACCACATTCTCGAGAAGGCTTCGTCTCTAGAGTACCTTACATTGGGACACCACCCGTGGCTATGACAGGAGAAATGACAAGATTGACCCATGTCAATGTTTACAAATGAGCAAGGAAGCTCTCTTGGAAGCTGAGAAGGCTCTCCTCGCTATTAGGATCTATGTTGAGGGGAGAGTACCCTCGAGTGTTAGCTTAAAGGTTATTGAGCCCTGCAGTAACTGCCACACTGAAACTAGAAGCTAATGATTTTGTGTGTAGAAAGTGTTGTTTCTGCCAGTTGCAAATACCATTGCTCTCATGTATGCCTGCGTTTCAACAATGTTGTAACTTCATCTGTTCCAAGTGATGGAAACCTATTTGAAGTTCAAAAAAAAAA]

[+] EMBL BM421193             [ATAACCGGTTTTTCCTCGCAAAGAGCATGATCGATCTTGCCCAACCACATTCTCGAGAAGGCTTCGTCTCTAGAGTACCTTACATTGGGACACCACCCGTGGCTATGACAGGAGAAATGACAAGATTGACCCATGTCAATGTTTACAAATGAGCAAGGAAGCTCTCTTGGAAGCTGAGAAGGCTCTCCTCGCTATTAGGATCTATGTTGAGGGGAGAGTACCCTCGAGTGTTAGCTTAAAGGTTATTGAGCCCTGCAGTAACTGCCACACTGAAACTAGAAGCTAATGATTTTGTGTGTAGAAAGTGTTGTTTCTGCCAGTTGCAAATACCATTGCTCTCATGTATGCCTGCGTTTCAACAATGTTGTAACTTCATCTGTTCCAAGTGATGGAAACCTATTTGAAGTTCAAAAAAAAAA]


>consensus_8670#1 ATAACCGGTTTTTCCTCGCAAAGAGCATGATCGATCTTGCCCAACCACATTCTCGAGAAG GCTTCGTCTCTAGAGTACCTTACATTGGGACACCACCCGTGGCTATGACAGGAGAAATGA CAAGATTGACCCATGTCAATGTTTACAAATGAGCAAGGAAGCTCTCTTGGAAGCTGAGAA GGCTCTCCTCGCTATTAGGATCTATGTTGAGGGGAGAGTACCCTCGAGTGTTAGCTTAAA GGTTATTGAGCCCTGCAGTAACTGCCACACTGAAACTAGAAGCTAATGATTTTGTGTGTA GAAAGTGTTGTTTCTGCCAGTTGCAAATACCATTGCTCTCATGTATGCCTGCGTTTCAAC AATGTTGTAACTTCATCTGTTCCAAGTGATGGAAACCTATTTGAAGTTCAAAAAAAAAA



consensusID : consensus_8670#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence
                              [TGCAGTAACTGCCACACTGAAACTAGAAANCTAATGATTTTGTGTGTAGAAAGGTGTTGTTTCTGCCAGTTNCAAATACCTTNCTCTCATGTATNCCTGCGTTTCAACAATGTTNNAACTTCATCTNTTCAAGTGAGGGAAACCTATTT]

[+] EMBL AA749659             [TGCAGTAACTGCCACACTGAAACTAGAAANCTAATGATTTTGTGTGTAGAAAGGTGTTGTTTCTGCCAGTTNCAAATACCTTNCTCTCATGTATNCCTGCGTTTCAACAATGTTNNAACTTCATCTNTTCAAGTGAGGGAAACCTATTT]


>consensus_8670#2 TGCAGTAACTGCCACACTGAAACTAGAAANCTAATGATTTTGTGTGTAGAAAGGTGTTGT TTCTGCCAGTTNCAAATACCTTNCTCTCATGTATNCCTGCGTTTCAACAATGTTNNAACT TCATCTNTTCAAGTGAGGGAAACCTATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8670#0      TCTCGGCTCTGCGATCTTAATTTCCCCGCGCCGCCGCCGCCGACGCCGCCGCCGATCTCG 60
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      CGCGCCGCCGCTCCCGCCGTTCCCGGCGAACGTCGCGCCTGATACTTCTCGAGAGCCTCG 120
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      ATCGCCCCAGGCTCCTTCCCCCTCTTGGGAGATTCATCGTTTTGTACTAAGCAGCGGCCA 180
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TATGGAGATACTGGAGGTGCCCGTCCAGCCGCCGCCGCGAATAGGTAATGGAGCTACTTC 240
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TTCAGCTTCTGAAATAGACAACTCCCCTTGTCAATGTGGCGATGATTCTCAATCTGCCAG 300
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TACAGTGGAATCCAAGATGCAGCTTCCAGAGGACATCCTTTATCACATACACACTCTCAT 360
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      GCCTATGCAGGATGCAGCTCGTGCCGCCTGTGCATCTCGTTGTTTTCTGCGTTCTTGGAG 420
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      ATTCTACCCCAGGCTCAATCTTAATGTTAATACACTACGCATAGATAAGAGAGCACCTAG 480
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      CAATGATAAACTAACAATTGATTTCATCAGTAGAGTCGACCCCATTATGCTGAATCATGC 540
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TGGCACAGGAGTGAAGATGTTTAAACTTACAACCCACCCTTGTTTCAGTCTGCATCCTAG 600
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TTATGTTGACCGCTGGCTTCAAATTGCGTTTGCACCAGGAATCAAAGAATTTGAACTAGA 660
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      AATGACCCGAGTTAGCAAGATGGATTATGATTTCCCATGCTCACTTCTATCAAGGGTAGC 720
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      AAGCTCAATTCAGTCTTTTTTACTTGGTGGCTGTTCTTTCCACCCTGGCATACAAATTGG 780
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TCAGATGAGTACCTTGACAAGTTTGCGTTTAAGATCAGTAAAAATTACTGAGGAGGAATT 840
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      ATGCGGCTTTCTATCCAAATCCTGTGCTTTGCAGCGATTGTTACTTTCAGACTGCCATAA 900
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TATTGTTGTCCTGAAGATCCCCCATCTGCTGGAGCTTAATTACCTGGAAGTGTTGCATTT 960
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TAGAAAATTGGAGGTGATTGACAGTAGTGCTCCAAAGCTCTCTACTTTCATCTATGCTGG 1020
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      CCCCCCAATACAAATCTCACTTGGAGAAGCATTATTACAAGTGAAGAAAATGCAAATGTT 1080
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TTGTGACGGAAGCCCTGACGCGCTACATTATGGTAGCAAGAAGCTTCCATCCATTGCGCC 1140
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      AAACATACAGAAGCTTTATCTATCAACACGTAATGAGACAGTCAATACACCAAAGGTACT 1200
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TGGCAAATTCCTGCAGCTCAAGTGCTTGGAGATACTGCTGCTTACACCAGATTTGTCCCC 1260
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      GGGCTATGATTTTTGTTCTCTGGTTTCCTTCATTGATGCTTCTCCTGCCTTGGAGACTTT 1320
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TATCCTGCGTGTAAGTTATTATTTATATGTCAAAGCTATCTATCATTTATCAGGTACCAC 1380
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TTATGTTCAAGATTTTATTGTTTTCTCTTAAAGAATTATTTGTTATGATGTTTCATGCAA 1440
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      ATGTTTTTTGTTATTTCTTGAATTGGACAAATGTAACATTTCTTTGTTCTGCAAATGATG 1500
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      CAACTGATCTCATATGTACTATCTTAAAAGACGCTTACTGGTGGTGGTTGCCACCCAATT 1560
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      ACCATGTGGTCCACGAACAATCAGACAAGACTTTGTCTAGGGATGCAAGTGGGTAGTCTC 1620
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      ACTACCCGCATAAAAACCCGCTTACTACTTCATTTTTCATATGGTAGCACAAAATTTAGA 1680
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      AGAAAAAATGAACTACAAGTGAGATAAGCGGGCTAAAAACACCCGCTTGCCCGCCCCGCT 1740
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      TGCATCCCTATCTTTATCTGACCCCTATGGCTAACTCAACTGACACCTACAAAGTGGCAG 1800
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      CAAAATTGGCATGATGATAATATAATTTTTATGGGCTTTAAAATATATGTGATGAGCTTT 1860
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      CTTTAAAAAAATAAAAACGTTGCAACTCTAGTAATAAATATTGACACTATTGATGGCCTT 1920
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      GATAAACTTTGCAACTAAATTACTTGCCTTGATCACTATCCTATTCCTATAAAGTAGTAG 1980
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      CTAAATAAAAGAGGGAGAGAATTAATATGGCTAACTTTTATTCAGTACCTTTTGCTCATT 2040
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      AAAAAAAAAGCAGACATTGACGTAATCCTTTGCAGATTGAACGGCCAGCTAAAAGACATG 2100
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      ATTCGATCCTTGAAGCATTGAGTGGTGACTCCATGCATCCAATGCGTGCTTCAGAATACC 2160
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      GCCATGACAATCTCAAGAACATGATGATAACCGGTTTTTCCTCTGCAAAGAGCATGATCG 2220
consensus_8670#1      --------------------------ATAACCGGTTTTTCCTC-GCAAAGAGCATGATCG 33
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      ATCTTGCC-AACCACATTCTCGAGAAGGCTTCGTCTCTAGAGTACCTTACATTGG-ACAC 2278
consensus_8670#1      ATCTTGCCCAACCACATTCTCGAGAAGGCTTCGTCTCTAGAGTACCTTACATTGGGACAC 93
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      CACCCGTGGCTATGACAGGAGAAATGACAAGATTGACCCATGTCAATGTTTACAA-TGAG 2337
consensus_8670#1      CACCCGTGGCTATGACAGGAGAAATGACAAGATTGACCCATGTCAATGTTTACAAATGAG 153
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      CAAGGAAGCTCTCTTGGAAGCTGAGAAGGCTCTCCTCGCTATTAGGATCTATGTTGAGGG 2397
consensus_8670#1      CAAGGAAGCTCTCTTGGAAGCTGAGAAGGCTCTCCTCGCTATTAGGATCTATGTTGAGGG 213
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      GAGAGTACCCTCGAGTGTTAGCTTAAAGGTTATTGAGCCCTGCAGTAACTGCCACACTGA 2457
consensus_8670#1      GAGAGTACCCTCGAGTGTTAGCTTAAAGGTTATTGAGCCCTGCAGTAACTGCCACACTGA 273
consensus_8670#2      ----------------------------------------TGCAGTAACTGCCACACTGA 20
                                                              ********************

consensus_8670#0      AACTAGAA-GCTAATGATTTTGTGTGTAGAAAG-TGTTGTTTCTGCCAGTTGCAAATACC 2515
consensus_8670#1      AACTAGAA-GCTAATGATTTTGTGTGTAGAAAG-TGTTGTTTCTGCCAGTTGCAAATACC 331
consensus_8670#2      AACTAGAAANCTAATGATTTTGTGTGTAGAAAGGTGTTGTTTCTGCCAGTTNCAAATACC 80
                      ********  *********************** ***************** ********

consensus_8670#0      -TTGCTCTCATGTATGCCTGCGTTTCAACA-TGTTGTAACTTCATCTGTTC-AAGTGATG 2572
consensus_8670#1      ATTGCTCTCATGTATGCCTGCGTTTCAACAATGTTGTAACTTCATCTGTTCCAAGTGATG 391
consensus_8670#2      -TTNCTCTCATGTATNCCTGCGTTTCAACAATGTTNNAACTTCATCTNTTC-AAGTGAGG 138
                       ** *********** ************** ****  ********** *** ****** *

consensus_8670#0      GAAACCTATTTGAAGTTCTGACATGCTTCATGCCACATCTTATTGCTACTTAGCATACAG 2632
consensus_8670#1      GAAACCTATTTGAAGTTCAAAAAAAAAA-------------------------------- 419
consensus_8670#2      GAAACCTATTT------------------------------------------------- 149
                      ***********                                                 

consensus_8670#0      TTCAATTTTCCTACATAGTGATAAGGAATTTATATGTTCTGCATGATGGGCGAACAATCA 2692
consensus_8670#1      ------------------------------------------------------------
consensus_8670#2      ------------------------------------------------------------
                                                                                  

consensus_8670#0      ATAAAAGGGAGAAATGACATTAGCGTGTGGCCTGTTTGAGAATGG 2737
consensus_8670#1      ---------------------------------------------
consensus_8670#2      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)