These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1198 fasta sequence [TACACAGTGTTACTGTAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTGCTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGTGAGTGAGAGGAGTGAAGATGGGGAGGTGTGTGGTCATAGGAGTGCGAAGGTCAACGCCGATGGGGGAAGGACCTGCGGTCGCCAGATCCGGCGACCCCACCTCTCGCAGGCGATAGATCGGCCGGCTCCCGTTCCTCCCAATGTGGGATCTGCGCGCCTACGACGAGCAGCTGCTCATCTCGGTCCGTGCCTCATCGAAGTGAGGAGGCACTTGCTCTGATTATGTGTTGACGAGGACGGCGCAGGCGCGCAGCCCGGCGTCCGGCGGTGGCTGCTTCCGTGGCCTCAAGTGACGCTGCTGAAGCTGACGATCTGGGCATCCGGCATATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCAGCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCCTCCAAATCCCTCTCTCTCTCTCCTCTCCTCTCTGCCGAGTAAACCGTCATCGAGAGAACATTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTTTTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTCTCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCTTGCTGGTG-TTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGATAGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTGCAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAATGGGATATCAT] [+] EMBL AK069417 [TACACAGTGTTACTGTAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTGCTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGTGAGTGAGAGGAGTGAAGATGGGGAGGTGTGTGGTCATAGGAGTGCGAAGGTCAACGCCGATGGGGGAAGGACCTGCGGTCGCCAGATCCGGCGACCCCACCTCTCGCAGGCGATAGATCGGCCGGCTCCCGTTCCTCCCAATGTGGGATCTGCGCGCCTACGACGAGCAGCTGCTCATCTCGGTCCGTGCCTCATCGAAGTGAGGAGGCACTTGCTCTGATTATGTGTTGACGAGGACGGCGCAGGCGCGCAGCCCGGCGTCCGGCGGTGGCTGCTTCCGTGGCCTCAAGTGACGCTGCTGAAGCTGACGATCTGGGCATCAGGCATATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCAGCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCCTCCAAATCCCTCTCTCTCTCTCCTCTCCTCTCTGCCGAGTAAACCGTCATCGAGAGAACATTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTTTTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTCTCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCTTGCTGGTG TTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGATAGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTGCAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAATGGGATATCAT] [+] EMBL AK103613 [ GAAATGCCCTTGTACTACTCGCCTTCTCTTGCTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGTGAGTGAGAGGAGTGAAGATGGGGAGGTGTGTGGTCATAGGAGTGCGAAGGTCAACGCCGATGGGGGAAGGACCTGCGGTCGCCAGATCCGGCGACCCCACCTCTCGCAGGCGATAGATCGGCCGGCTCCCGTTCCTCCCAATGTGGGATCTGCGCGCCTACGACGAGCAGCTGCTCATCTCGGTCCGTGCCTCATCGAAGTGAGGAGGCACTTGCTCTGATTATGTGTTGACGAGGACGGCGCAGGCGCGCAGCCCGGCGTCCGGCGGTGGCTGCTTCCGTGGCCTCAAGTGACGCTGCTGAAGCTGACGATCTGGGCATCCGGCATATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCAGCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCCTCCAAATCCCTCTCTCTCTCTCCTCTCCTCTCTGCCGAGTAAACCGTCATCGAGAGAACATTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTTTTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTCTCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCTTGCTGGTGTTTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGATAGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTGCAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAATGGGATATC ] [+] EMBL AK105728 [ GTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGTGAGTGAGAGGAGTGAAGATGGGGAGGTGTGTGGTCATAGGAGTGCGAAGGTCAACGCCGATGGGGGAAGGACCTGCGGTCGCCAGATCCGGCGACCCCACCTCTCGCAGGCGATAGATCGGCCGGCTCCCGTTCCTCCCAATGTGGGATCTGCGCGCCTACGACGAGCAGCTGCTCATCTCGGTCCGTGCCTCATCGAAGTGAGGAGGCACTTGCTCTGATTATGTGTTGACGAGGACGGCGCAGGCGCGCAGCCCGGCGTCCGGCGGTGGCTGCTTCCGTGGCCTCAAGTGACGCTGCTGAAGCTGACGATCTGGGCATCCGGCATATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCAGCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCCTCCAAATCCCTCTCTCTCTCTCCTCTCCTCTCTGCCGAGTAAACCGTCATCGAGAGAACATTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTTTTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTCTCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCTTGCTGGTG TTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGATAGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTGCAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAATGGGATATC ] [-] EMBL CF309762 [ GCTGCTGAAGCTGACGATCTGGGCATCCGGCATATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCAGCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCCTCCAAATCCCTCTCTCTCTCTCCTCTCCTCTNTGCCGAGTAAACCGTCATCGAGAGAACATTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTTTTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTCTCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCTTGCTGGTG TTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGATAGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTGCAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAAaaaa ] consensusID : consensus_8671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [CATGGACTCAAGGAGTAGAAAAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTGCTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGT] [+] EMBL CF309761 [CATGGACTCAAGGAGTAGAAAAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTGCTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8671#0 ----TACACAGTGT-TACTGTAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTG 55 consensus_8671#1 CATGGACTCAAGGAGTAGAAAAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTG 60 ** ** * ** *************************************** consensus_8671#0 CTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCC 115 consensus_8671#1 CTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCC 120 ************************************************************ consensus_8671#0 CGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTC 175 consensus_8671#1 CGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTC 180 ************************************************************ consensus_8671#0 GGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGC 235 consensus_8671#1 GGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGC 240 ************************************************************ consensus_8671#0 TGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATG 295 consensus_8671#1 TGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATG 300 ************************************************************ consensus_8671#0 GCGCGCATCGGCGCATCAACGTCGGGGAGGAGTGAGTGAGAGGAGTGAAGATGGGGAGGT 355 consensus_8671#1 GCGCGCATCGGCGCATCAACGTCGGGGAGGAGT--------------------------- 333 ********************************* consensus_8671#0 GTGTGGTCATAGGAGTGCGAAGGTCAACGCCGATGGGGGAAGGACCTGCGGTCGCCAGAT 415 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 CCGGCGACCCCACCTCTCGCAGGCGATAGATCGGCCGGCTCCCGTTCCTCCCAATGTGGG 475 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 ATCTGCGCGCCTACGACGAGCAGCTGCTCATCTCGGTCCGTGCCTCATCGAAGTGAGGAG 535 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 GCACTTGCTCTGATTATGTGTTGACGAGGACGGCGCAGGCGCGCAGCCCGGCGTCCGGCG 595 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 GTGGCTGCTTCCGTGGCCTCAAGTGACGCTGCTGAAGCTGACGATCTGGGCATCCGGCAT 655 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 ATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCA 715 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 GCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCC 775 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 TCCAAATCCCTCTCTCTCTCTCCTCTCCTCTCTGCCGAGTAAACCGTCATCGAGAGAACA 835 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 TTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTT 895 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 TTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTC 955 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 TCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCT 1015 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 TGCTGGTGTTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGAT 1075 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 AGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTG 1135 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 CAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAATGGGATAT 1195 consensus_8671#1 ------------------------------------------------------------ consensus_8671#0 CAT 1198 consensus_8671#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||