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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 937 fasta sequence
[CCGCCACGGGAGCTGCTCCCGCTTCTCCTCCGTCGCTCTCCGCCGCCGCCGCCACCGTCACCCTCCTCGGCCTCCCGCTGGTCTCCTCCGTCGTCCTCCTCTGCCGCCGCCGCCACCGTCACCCTCCCTTCGCATGGCGATGTCGAGCGTGAGGAAAGCCTTCGTGCGCGCCGCAGGGGGGCCGATCTCCTCCTTCGCTGAGAAACGGGGCTCGTTCTTCTCCGGTCCGGACGGTGGAGGAAAATGGCTGAAGGATGCCAGGGAATGGTGCGATCGCTGGCAATCTGTTGGATGGGCAATTGGCTCATTGTGTGCAGGCGCAGGAGTGGTTGGTGGGATTGCCGCGAGGTACATAAGGCATGATGTCGAGGCATATGTTGATGGGAAGATAGCGCAGGTCGTATCAAAAAATGATGAGTTCCGTGTGGCTGCGACAAAAACTCATTACGACTTTCAACAGAAGATCAGTGACCTCTTTCTGGAGTATCAAAGGGAGTTAAACATGTTGGCTAAGAGTCACCTGCAGTTTCAGAGAGACATGATGAAGCTGGAGCATTCCATATTCCTTCTTCCCAATTTTGCTCCAGAAGAAAAGGGACCTGTGGGTGCTGTGGGAGGTGACAGGGGACCTGTGGATGCTGTGGGAGGTGACAGGGAACCAGTGGGTGCTGTGGGGGGTGACAAGGGATCTGAGGGACAGCTGAACCTGTAACATTCAAAAGCTGATTTTGGTGGAGGGGACTTCAACTGATGCAAGGATGGACCTGAGTGTGCTTCTTCAACTGAAGCAAGGGATGACCTGAGTGTGTTTTTTGGGCTGCTTAAAAAATTAGGCAGTTATGTGACCTAGACTCTATTCCAGCTCACGTATGTGCTCTGTGGTTGCTGATCTTTGGACCCAATTTAAACAATGGGAATGTGGGATGGTCAAAAGTNN]
[+] EMBL AK107574 [CCGCCACGGGAGCTGCTCCCGCTTCTCCTCCGTCGCTCTCCGCCGCCGCCGCCACCGTCACCCTCCTCGGCCTCCCGCTGGTCTCCTCCGTCGTCCTCCTCTGCCGCCGCCGCCACCGTCACCCTCCCTTCGCATGGCGATGTCGAGCGTGAGGAAAGCCTTCGTGCGCGCCGCAGGGGGGCCGATCTCCTCCTTCGCTGAGAAACGGGGCTCGTTCTTCTCCGGTCCGGACGGTGGAGGAAAATGGCTGAAGGATGCCAGGGAATGGTGCGATCGCTGGCAATCTGTTGGATGGGCAATTGGCTCATTGTGTGCAGGCGCAGGAGTGGTTGGTGGGATTGCCGCGAGGTACATAAGGCATGATGTCGAGGCATATGTTGATGGGAAGATAGCGCAGGTCGTATCAAAAAATGATGAGTTCCGTGTGGCTGCGACAAAAACTCATTACGACTTTCAACAGAAGATCAGTGACCTCTTTCTGGAGTATCAAAGGGAGTTAAACATGTTGGCTAAGAGTCACCTGCAGTTTCAGAGAGACATGATGAAGCTGGAGCATTCCATATTCCTTCTTCCCAATTTTGCTCCAGAAGAAAAGGGACCTGTGGGTGCTGTGGGAGGTGACAGGGGACCTGTGGATGCTGTGGGAGGTGACAGGGAACCAGTGGGTGCTGTGGGGGGTGACAAGGGATCTGAGGGACAGCTGAACCTGTAACATTCAAAAGCTGATTTTGGTGGAGGGGACTTCAACTGATGCAAGGATGGACCTGAGTGTGCTTCTTCAACTGAAGCAAGGGATGACCTGAGTGTGTTTTTTGGGCTGCTTAAAAAATTAGGCAGTTATGTGACCTAGACTCTATTCCAGCTCACGTATGTGCTCTGTGGTTGCTGATCTTTGGACCCAATTTAAACAATGGGAATG ]
[+] EMBL OSS2108A [ AAGAGTCACCTGCAGTTTCAGAGAGACATGATGAAGCTGGAGCATTCCATATTCCTTCTTCCCAATTTTNCTCCAGAAGAAAAGGGACCTGTGGGTGCTGTGGGAGGTGACAGGGGACCTGTGGATGCTGTGGGAGGTGACAGGGAACCAGTGGGTGCTGTGGGGGGTGACAAGGGATCTGAGGGACAGCTGAACCTGTAACATTCAAAAGCTGATTTTGGTGGAGGGGACTTCAACTGATG ]
[+] EMBL AA749574 [ GGGATGACCTGAGTGTTTTTTTTTTTCTGCTTAAAAAATTAGGCAGTTATGTGACCTAGACTCTATTCCAGCTCACGTATGT CTCTGTGGTTNCTGATCTTTGGACCCAATTTAAACAATGGGAATGTGGGATGGTCAAAAGTNN]
consensusID : consensus_8672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 843 fasta sequence
[CGTCGCTCTCCGCCGCCGCCGCCACCGTCACCCTCCTCGGCCTCCCGCTGGTCTCCTCCGTCGTCCTCCTCTGCCGCCGCCGCCACCGTCACCCTCCCTTCGCATGGCGATGTCGAGCGTGAGGAAAGCCTTCGTGCGCGCCGCAGGGGGGCCGATCTCCTCCTTCGCTGAGAAACGGGGCTCGTTCTTCTCCGGTCCGGACGGTGGAGGAAAATGGCTGAAGGATGCCAGGGAATGGTGCGATCGCTGGCAATCTGTTGGATGGGCAATTGGCTCATTGTGTGCAGGCGCAGGAGTGGTTGGTGGGATTGCCGCGAGGTACATAAGGCATGATGTCGAGGCATATGTTGATGGGAAGATAGCGCAGGTCGTATCAAAAAATGATGAGTTCCGTGTGGCTGCGACAAAAACTCATTACGACTTTCAACAGAAGAAAAGGGACCTGTGGGTGCTGTGGGAGGTGACAGGGGACCTGTGGATGCTGTGGGAGGTGACAGGGAACCAGTGGGTGCTGTGGGGGGTGACAAGGGATCTGAGGGACAGCTGAACCTGTAACATTCAAAAGCTGATTTTGGTGGAGGGGACTTCAACTGATGCAAGGATGGACCTGAGTGTGCTTCTTCAACTGAAGCAAGGGATGATCTGAGTGTGTTTTTTGGGCTGCTTAAAAAATTAGGCAGTTATGTGACCTAGACTCTATTCCAGCTCACGTATGTGCTCTGTGGNTGCTGATCTTTGGACCCAATTTAAACAATGGGAATGTGGGATGGTCAAAAGTTAACTTCTATTTTTAACAATCAAGCTGTATCGAAAAATTCGCAGGTTACAATAAAAAAAAAAAAG]
[+] EMBL CB646761 [CGTCGCTCTCCGCCGCCGCCGCCACCGTCACCCTCCTCGGCCTCCCGCTGGTCTCCTCCGTCGTCCTCCTCTGCCGCCGCCGCCACCGTCACCCTCCCTTCGCATGGCGATGTCGAGCGTGAGGAAAGCCTTCGTGCGCGCCGCAGGGGGGCCGATCTCCTCCTTCGCTGAGAAACGGGGCTCGTTCTTCTCCGGTCCGGACGGTGGAGGAAAATGGCTGAAGGATGCCAGGGAATGGTGCGATCGCTGGCAATCTGTTGGATGGGCAATTGGCTCATTGTGTGCAGGCGCAGGAGTGGTTGGTGGGATTGCCGCGAGGTACATAAGGCATGATGTCGAGGCATATGTTGATGGGAAGATAGCGCAGGTCGTATCAAAAAATGATGAGTTCCGTGTGGCTGCGACAAAAACTCATTACGACTTTCAACAGAAGAAAAGGGACCTGTGGGTGCTGTGGGAGGTGACAGGGGACCTGTGGATGCTGTGGGAGGTGACAGGGAACCAGTGGGTGCTGTGGGGGGTGACAAGGGATCTGAGGGACAGCTGAACCTGTAACATTCAAAAGCTGATTTTGGTGGAGGGGACTTCAACTGATGCAAGGATGGACCTGAGTGTGCTTCTTCAACTGAAGCAAGGGATGATCTGAGTGTGTTTTTTGGGCTGCTTAAAAAATTAGGCAGTTATGTGACCTAGACTCTATTCCAGCTCACGTATGTGCTCTGTGGNTGCTGATCTTTGGACCCAATTTAAACAATGG ]
[-] EMBL CB646762 [ CCTCCCTTTGCATGGCGATGTCGAGCGTGAGGAAAGCCTTCGTGCGCGCCGCAGGGGGGCCGATCTCCTCCTTCGCTGAGAAACGGGGCTCGTTCTTCTCCGGTCCGGACGGTGGAGGAAAATGGCTGAAGGATGCCAGGGAATGGTGCGATCGCTGGCAATCTGTTGGATGGGCAATTGGCTCATTGTGTGCAGGCGCAGGAGTGGTTGGTGGGATTGCCGCGAGGTACATAAGGCATGATGTCGAGGCATATGTTGATGGGAAGATAGCGCAGGTCGTATCAAAAAATGATGAGTTCCGTGTGGCTGCGACAAAAACTCATTACGACTTTCAACAGAAGAAAAGGGACCTGTGGGTGCTGTGGGAGGTGACAGGGGACCTGTGGATGCTGTGGGAGGTGACAGGGAACCAGTGGGTGCTGTGGGGGGTGACAAGGGATCTGAGGGACAGCTGAACCTGTAACATTCAAAAGCTGATTTTGGTGGAGGGGACTTCAACTGATGCAAGGATGGACCTGAGTGTGCTTCTTCAACTGAAGCAAGGGATGATCTGAGTGTGTTTTTTGGGCTGCTTAAAAAATTAGGCAGTTATGTGACCTAGACTCTATTCCAGCTCACGTATGTGCTCTGTGGTTGCTGATCTTTGGACCCAATTTAAACAATGGGAATGTGGGATGGTCAAAAGTTAACTTCTATTTTTAACAATCAAGCTGTATCGAAAAATTCGCAGGTTACAATAAAAAAAAAAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8672#0 CCGCCACGGGAGCTGCTCCCGCTTCTCCTCCGTCGCTCTCCGCCGCCGCCGCCACCGTCA 60
consensus_8672#1 ------------------------------CGTCGCTCTCCGCCGCCGCCGCCACCGTCA 30
******************************
consensus_8672#0 CCCTCCTCGGCCTCCCGCTGGTCTCCTCCGTCGTCCTCCTCTGCCGCCGCCGCCACCGTC 120
consensus_8672#1 CCCTCCTCGGCCTCCCGCTGGTCTCCTCCGTCGTCCTCCTCTGCCGCCGCCGCCACCGTC 90
************************************************************
consensus_8672#0 ACCCTCCCTTCGCATGGCGATGTCGAGCGTGAGGAAAGCCTTCGTGCGCGCCGCAGGGGG 180
consensus_8672#1 ACCCTCCCTTCGCATGGCGATGTCGAGCGTGAGGAAAGCCTTCGTGCGCGCCGCAGGGGG 150
************************************************************
consensus_8672#0 GCCGATCTCCTCCTTCGCTGAGAAACGGGGCTCGTTCTTCTCCGGTCCGGACGGTGGAGG 240
consensus_8672#1 GCCGATCTCCTCCTTCGCTGAGAAACGGGGCTCGTTCTTCTCCGGTCCGGACGGTGGAGG 210
************************************************************
consensus_8672#0 AAAATGGCTGAAGGATGCCAGGGAATGGTGCGATCGCTGGCAATCTGTTGGATGGGCAAT 300
consensus_8672#1 AAAATGGCTGAAGGATGCCAGGGAATGGTGCGATCGCTGGCAATCTGTTGGATGGGCAAT 270
************************************************************
consensus_8672#0 TGGCTCATTGTGTGCAGGCGCAGGAGTGGTTGGTGGGATTGCCGCGAGGTACATAAGGCA 360
consensus_8672#1 TGGCTCATTGTGTGCAGGCGCAGGAGTGGTTGGTGGGATTGCCGCGAGGTACATAAGGCA 330
************************************************************
consensus_8672#0 TGATGTCGAGGCATATGTTGATGGGAAGATAGCGCAGGTCGTATCAAAAAATGATGAGTT 420
consensus_8672#1 TGATGTCGAGGCATATGTTGATGGGAAGATAGCGCAGGTCGTATCAAAAAATGATGAGTT 390
************************************************************
consensus_8672#0 CCGTGTGGCTGCGACAAAAACTCATTACGACTTTCAACAGAAGATCAGTGACCTCTTTCT 480
consensus_8672#1 CCGTGTGGCTGCGACAAAAACTCATTACGACTTTCAACAGAAGA---------------- 434
********************************************
consensus_8672#0 GGAGTATCAAAGGGAGTTAAACATGTTGGCTAAGAGTCACCTGCAGTTTCAGAGAGACAT 540
consensus_8672#1 ------------------------------------------------------------
consensus_8672#0 GATGAAGCTGGAGCATTCCATATTCCTTCTTCCCAATTTTGCTCCAGAAGAAAAGGGACC 600
consensus_8672#1 ---------------------------------------------------AAAGGGACC 443
*********
consensus_8672#0 TGTGGGTGCTGTGGGAGGTGACAGGGGACCTGTGGATGCTGTGGGAGGTGACAGGGAACC 660
consensus_8672#1 TGTGGGTGCTGTGGGAGGTGACAGGGGACCTGTGGATGCTGTGGGAGGTGACAGGGAACC 503
************************************************************
consensus_8672#0 AGTGGGTGCTGTGGGGGGTGACAAGGGATCTGAGGGACAGCTGAACCTGTAACATTCAAA 720
consensus_8672#1 AGTGGGTGCTGTGGGGGGTGACAAGGGATCTGAGGGACAGCTGAACCTGTAACATTCAAA 563
************************************************************
consensus_8672#0 AGCTGATTTTGGTGGAGGGGACTTCAACTGATGCAAGGATGGACCTGAGTGTGCTTCTTC 780
consensus_8672#1 AGCTGATTTTGGTGGAGGGGACTTCAACTGATGCAAGGATGGACCTGAGTGTGCTTCTTC 623
************************************************************
consensus_8672#0 AACTGAAGCAAGGGATGACCTGAGTGTGTTTTTTGGGCTGCTTAAAAAATTAGGCAGTTA 840
consensus_8672#1 AACTGAAGCAAGGGATGATCTGAGTGTGTTTTTTGGGCTGCTTAAAAAATTAGGCAGTTA 683
****************** *****************************************
consensus_8672#0 TGTGACCTAGACTCTATTCCAGCTCACGTATGTGCTCTGTGGTTGCTGATCTTTGGACCC 900
consensus_8672#1 TGTGACCTAGACTCTATTCCAGCTCACGTATGTGCTCTGTGGNTGCTGATCTTTGGACCC 743
****************************************** *****************
consensus_8672#0 AATTTAAACAATGGGAATGTGGGATGGTCAAAAGTNN----------------------- 937
consensus_8672#1 AATTTAAACAATGGGAATGTGGGATGGTCAAAAGTTAACTTCTATTTTTAACAATCAAGC 803
***********************************
consensus_8672#0 ----------------------------------------
consensus_8672#1 TGTATCGAAAAATTCGCAGGTTACAATAAAAAAAAAAAAG 843
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||