These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAAATGTCACCAACTTTCAAACCACAAATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCGGTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCTACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCTCTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCGGTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTCTGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCCCGCTTGAGAACGGCGGTGTCAACGGCGTCGCTTAAGGGAAGGAGAACTGTTG-GGC-CTCCCGTGCG--CCTG-ACCTGTGGGGGAACTCGCACCAACCCCTTCAATAAACTATTTTAGT-NCACAGTTTGATATGAGGTGGATGAATATGAGGGGCGC-AT-AAGGCGTCAAGGCT-GCTAGAGTCGTCAATTGTGTAAATTGCACCACGCGTNTGGTTCGTGTTCTCTTACGAAGTTACAAATATCAATACCGAACAAACCGATACAAATGGACGATGC] [+] EMBL AW155405 [AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAAATGTCACCAACTTTCAAACCACAAATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCGGTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCTACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCTCTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCGGTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTCTGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCCCGCTTGAGAACGGCGGTGTCAACGGCGTCGCTTAAGGGAAGGAGAACTGTTG GGC CTCCCGTGCG CCTG ACCTGTGGGGGAACTCGCACCAACCCCTTCAATAAACTATTTTAGT NCACAGTTTGATATGAGGTGGATGAATATGAGGGGCGC AT AAGGCGTCAAGGCT GCTAGAGTCGTCAATTGTGTAAATTGCACCACGCGTNTGGTTCGTGTTCTCTTACGAAGTTACAAATATCAATACCGAACAAACCGATACAAATGGACGATGC] [+] EMBL AW155335 [AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAAATGTGACCAACTTTCAAACCACAAATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCGGTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCTACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCTCTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCGGTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTCTGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCCCGCTTGAGACCGGCCGTGTCAACGTCCTCCCTTAAGGGATGG GAAAT TTGTGGCTCTCCCCTGGGTCCCTGCACGTG GGGGGAACTCGCACCAACCCCTTCAAAAAGCTA TTTAGTCCCACAGTTTGATATGAGGTGGATGAATATGA AGGCGCAATAAAGGCGT AAGGCTGGCTAGAGTCG CAATTGTGTTAATCG AACACACGT TTGTTCGTTTT ] consensusID : consensus_8678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAGAGGGGACCAACTTTCANACCACAAATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCGGTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCTACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCTCTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCGGTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTCTGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGGTTTCTTGGAGAAGCGCCCGCTTGAGAACGGCGGTGCAACGGTATCCCTTAGGGCAAGGGACACGGTGGCCCCCCCTGGCTCCCAACCCGGGGGGAAACCGCACCAACCCCCTTAAATACCTATTTTAGTCGCACATTTGATTAAGGTGAAAAAATGAGGGCCCAAAAAGGCGTCAAGGCTGGTAGAGACTCAATTGAGTTCCGCAACCAGCGCTAGGTTGA] [+] EMBL AW155324 [AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAGAGGGGACCAACTTTCANACCACAAATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCGGTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCTACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCTCTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCGGTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTCTGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGGTTTCTTGGAGAAGCGCCCGCTTGAGAACGGCGGTGCAACGGTATCCCTTAGGGCAAGGGACACGGTGGCCCCCCCTGGCTCCCAACCCGGGGGGAAACCGCACCAACCCCCTTAAATACCTATTTTAGTCGCACATTTGATTAAGGTGAAAAAATGAGGGCCCAAAAAGGCGTCAAGGCTGGTAGAGACTCAATTGAGTTCCGCAACCAGCGCTAGGTTGA] consensusID : consensus_8678#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [TGTCGGTGNCCTNATCAANGNCCCTNNCACCCTTCANNTNCNANGGTTCGGCATACCTNCGGTGCTCTGATTCTTTATGGCTACCTTNTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCCCGCTTGAGACCGTCGGTGTCAGCGTCGTCGCTAAGGTCATGGAGACTGTTGGCCTCGCCTGCGTCCTGACCTGGTGGGGAACTCGCACCAACCCCTTCGAATAAGCTATTTTAGTCGCACAGTTTGATATGAGGTGGATGAATATGAAGGCGCAATAAAGGCGTCAAGGCTGGCTAGAGTCGTCAATTGTGTTAATTGCAACCACGCGTTTTGTTTCGTTTTCTCTTACCGTAGTTCACAAATAATCAATACCGAAACAAACCAGATACCAAAAAAAA] [+] EMBL AT003574 [TGTCGGTGNCCTNATCAANGNCCCTNNCACCCTTCANNTNCNANGGTTCGGCATACCTNCGGTGCTCTGATTCTTTATGGCTACCTTNTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCCCGCTTGAGACCGTCGGTGTCAGCGTCGTCGCTAAGGTCATGGAGACTGTTGGCCTCGCCTGCGTCCTGACCTGGTGGGGAACTCGCACCAACCCCTTCGAATAAGCTATTTTAGTCGCACAGTTTGATATGAGGTGGATGAATATGAAGGCGCAATAAAGGCGTCAAGGCTGGCTAGAGTCGTCAATTGTGTTAATTGCAACCACGCGTTTTGTTTCGTTTTCTCTTACCGTAGTTCACAAATAATCAATACCGAAACAAACCAGATACCAAAAAAAA] consensusID : consensus_8678#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [CCTNCCTTGGGTCGGGCCTTGTGNCTCNTTTNAGTTGATATAGGGGGTNNGAGTNNCCCTCATCNNACGCCACCCTNCGCNCCCCCANCTNCAANGGTTNGGCANNCCACGGNGCTCTGATCNTTANGGCCCACCTTATGCCCCTGGGTACATTTCNNAAGTNTTTTTNGAAAANNGNCCNCTTNAAACNGTCGGNGTCAGGGTNGTCGNTAAGGTCATGGANACTGTTGGCCTCGCCTGNGTCCTGACCTGGTGGGGAACTNGCNCCAACCCCTTNGAATAAANTNTTTTAGTCGCCCAGTTTTATATNAGGNGGCCCAATATNAAGGCNCNATNAAGGCGAAAAAAAAAAAAANAAANAAAAAAAAAAAAAA] [+] EMBL AT003615 [CCTNCCTTGGGTCGGGCCTTGTGNCTCNTTTNAGTTGATATAGGGGGTNNGAGTNNCCCTCATCNNACGCCACCCTNCGCNCCCCCANCTNCAANGGTTNGGCANNCCACGGNGCTCTGATCNTTANGGCCCACCTTATGCCCCTGGGTACATTTCNNAAGTNTTTTTNGAAAANNGNCCNCTTNAAACNGTCGGNGTCAGGGTNGTCGNTAAGGTCATGGANACTGTTGGCCTCGCCTGNGTCCTGACCTGGTGGGGAACTNGCNCCAACCCCTTNGAATAAANTNTTTTAGTCGCCCAGTTTTATATNAGGNGGCCCAATATNAAGGCNCNATNAAGGCGAAAAAAAAAAAAANAAANAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8678#0 AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAAATGTCACCAACTTTCAAACCACAA 60 consensus_8678#1 AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAGAGGGGACCAACTTTCANACCACAA 60 consensus_8678#2 ------------------------------------------------------------ consensus_8678#3 ------------------------------------------------------------ consensus_8678#0 ATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCG 120 consensus_8678#1 ATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCG 120 consensus_8678#2 ------------------------------------------------------------ consensus_8678#3 ------------------------------------------------------------ consensus_8678#0 GTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCT 180 consensus_8678#1 GTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCT 180 consensus_8678#2 ------------------------------------------------------------ consensus_8678#3 ------------------------------------------------------------ consensus_8678#0 ACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCT 240 consensus_8678#1 ACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCT 240 consensus_8678#2 ------------------------------------------------------------ consensus_8678#3 ------------------------------------------------------------ consensus_8678#0 CTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCG 300 consensus_8678#1 CTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCG 300 consensus_8678#2 -------------------------------------------------------TGTCG 5 consensus_8678#3 -------CCTNCCTTGGGTCGGGCCTTGTGNCTCNTTTNAGTTGATATAGGGGGTNNGAG 53 * consensus_8678#0 GTGCCCTCATCAA-CGCCAC--TGCCACCCT-CAGCTACAAGGGTTCGGCATACCTC-GG 355 consensus_8678#1 GTGCCCTCATCAA-CGCCAC--TGCCACCCT-CAGCTACAAGGGTTCGGCATACCTC-GG 355 consensus_8678#2 GTGNCCTNATCAA-NGNCCC--TNNCACCCTTCANNTNCNANGGTTCGGCATACCTNCGG 62 consensus_8678#3 TNNCCCTCATCNNACGCCACCCTNCGCNCCCCCANCTNCAANGGTTNGGCANNCCAC-GG 112 *** *** * * * * ** ** * * * **** **** ** ** consensus_8678#0 TGCTCTGAT-CTTTATGGCTACCT-CTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAG 413 consensus_8678#1 TGCTCTGAT-CTTTATGGCTACCT-CTGCCCCTGGCTACATCTCGCAAGGTTTCTTGGAG 413 consensus_8678#2 TGCTCTGATTCTTTATGGCTACCTTNTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAG 122 consensus_8678#3 NGCTCTGATCNTTANGGCCCACCTTATGCCCCTGGGTACATTTCNNAAGTNTTTTTNGAA 172 ******** ** * * **** ********* ***** ** *** ** ** ** consensus_8678#0 AAGCGCCCGCTTGAGAACGGCGGTGTCAACGGCGTCGCTTAAGGGAAGGAGAACTGTTGG 473 consensus_8678#1 AAGCGCCCGCTTGAGAACGGCGGTG-CAACGGTATCCCTTAGGGCAAGGGACACGGT-GG 471 consensus_8678#2 AAGCGCCCGCTTGAGACCGTCGGTGTCAGCGTCGTCGCTAAGGTCATGGAG-ACTGTTGG 181 consensus_8678#3 AANNGNCCNCTTNAAACNGTCGGNGTCAGGGTNGTCGNTAAGGTCATGGAN-ACTGTTGG 231 ** * ** *** * * * *** * ** * ** * * * * ** ** ** ** consensus_8678#0 GCCTCCCGTGCGCCTGACCTGTGGGGGAACTCGCACCAACCCCTTCAATAAA-CTATTTT 532 consensus_8678#1 CCCCCCCTGGCTCCCAACCCG-GGGGGAAACCGCACCAACCCCCTTAAATAC-CTATTTT 529 consensus_8678#2 CCTCGCCTGCGTCCTGACCTGGTGGGGAACTCGCACCAACCCCTTCGAATAAGCTATTTT 241 consensus_8678#3 CCTCGCCTGNGTCCTGACCTGGTGGGGAACTNGCNCCAACCCCTTNGAATAAANTNTTTT 291 * ** ** *** * ****** ** ******** * * * * **** consensus_8678#0 AGTNCACAG-TTTGATATGAGGTGGATGAATATGAGGGGCGCA-TAAGGCGTCAAGGCTG 590 consensus_8678#1 AGTCGCACA-TTTGAT-TAAGGTGAA--AAAATGAGGGCCCAA-AAAGGCGTCAAGGCTG 584 consensus_8678#2 AGTCGCACAGTTTGATATGAGGTGGATGAATATGAAGGCGCAATAAAGGCGTCAAGGCTG 301 consensus_8678#3 AGTCGCCCAGTTTTATATNAGGNGGCCCAATATNAAGGCNCNATNAAGGCGAAAAAAAAA 351 *** *** ** * *** * ** ** * ** * ****** ** consensus_8678#0 C-TAGAGTCGTCAATTGTGTAAATTGCACCAC-GCGTNTGGTT-CGTGTTCTCTTACGAA 647 consensus_8678#1 G-TAGAGAC-TCAATTGAGTT--CCGCAACCA-GCGCTAGGTT-GA-------------- 624 consensus_8678#2 GCTAGAGTCGTCAATTGTGTTAATTGCAACCACGCGTTTTGTTTCGTTTTCTCTTACCGT 361 consensus_8678#3 AAAANAAANAAAAAAAAAAAAAA------------------------------------- 374 * * ** consensus_8678#0 GTTACAAATATCAATACCGAACAAACCGATACAAATGGACGATGC- 692 consensus_8678#1 ---------------------------------------------- consensus_8678#2 AGTTCACAAATAATCAATACCGAAACAAACCAGATACCAAAAAAAA 407 consensus_8678#3 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||