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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1362 fasta sequence
[CAATAATAGCCCACACAACCCTAGGCTGCGCTAGTGTCGTCGGTCCCCATCCCATTCGGCCACCGATCCCAATCTCAATCTGACGCCGCCGCCGGCATCCCTGACTCACCGACGCGGCTGCACCAGGCGCCGCCGCCGCCGCCTCCGCCTTGATCGTAAGGAAGTAAGTTT-GGAGCACCATGGCTCTGCGATCGGCGGCCGGTAGGCTGGCGTCGTCCAGCCGCCGCCGCCTCCTCTCTCCGCCCACCAGCATCCACACAGCCTTCCTCCACTCCCACGCCACCAGCTTCGGATACAAGCAAGTAGCTGAAGAGGACAAAAGCAAATTGGTCGGTAACGTCTTCAGCAGCGTCGCCTCCAGTTACGATCTCATGAACGATCTTATGAGCGTTGGACTACATAGGTTGTGGAAGGACAGGCTCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAGGGGATGTTGCCTTCCGTGCGCTCGAGAGAATCAATAGCGTGAGCCATAGAGCTATGCAGGGTACTCTTACTGATATTGAAGAAGAAACACAAATCTATGTTTGTGACATTAATCCAAATATGCTGAATGTTGGAAAGAAACGTGCTTCAGAAAGAGGATACAAAGAAGGCCATTGCCTTAGCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATACTATTGCGTTTGGGATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATAGAGTCCTAAAGCGAGGGGGAAGGTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGCTTTTTAAAGAGATTTATGATGTTTATTCATTTTCTGTGATTCCGGCTGTGGGAGAACTAGTGGCCGGTGATCGCCAGTCATACCAATACTTGGTTGAGAGTATCCGCCGGTTTCCAAATCAGGAAAAGTTTGCTCAGATGATCCAAGAAGCCGGATTTGAGAGGGTAGAATACGAAAATCTGGTGGGTGGTGTGGTTGCCATTCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCAAGTTTGATGGATACTTTACTGTTACTCCTACGGCAACGGCAAGGTCTTGTGAAGCGGGCGTTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCAATAAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTT-AGATGAAAGGCTTTTGACAGCCCAGCTTTACTGAAAAGCATAAAATGTT-GTTTTGACAACCAAAACAAACAACTAAAAGGGAGTCACACTAGATTGACAGAAAAGTTAAAAAA]
[+] EMBL AK072971 [CAATAATAGCCCACACAACCCTAGGCTGCGCTAGTGTCGTCGGTCCCCATCCCATTCGGCCACCGATCCCAATCTCAATCTGACGCCGCCGCCGGCATCCCTGACTCACCGACGCGGCTGCACCAGGCGCCGCCGCCGCCGCCTCCGCCTTGATCGTAAGGAAGTAAGTTT GGAGCACCATGGCTCTGCGATCGGCGGCCGGTAGGCTGGCGTCGTCCAGCCGCCGCCGCCTCCTCTCTCCGCCCACCAGCATCCACACAGCCTTCCTCCACTCCCACGCCACCAGCTTCGGATACAAGCAAGTAGCTGAAGAGGACAAAAGCAAATTGGTCGGTAACGTCTTCAGCAGCGTCGCCTCCAGTTACGATCTCATGAACGATCTTATGAGCGTTGGACTACATAGGTTGTGGAAGGACAGGCTCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAGGGGATGTTGCCTTCCGTGCGCTCGAGAGAATCAATAGCGTGAGCCATAGAGCTATGCAGGGTACTCTTACTGATATTGAAGAAGAAACACAAATCTATGTTTGTGACATTAATCCAAATATGCTGAATGTTGGAAAGAAACGTGCTTCAGAAAGAGGATACAAAGAAGGCCATTGCCTTAGCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATACTATTGCGTTTGGGATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATAGAGTCCTAAAGCGAGGGGGAAGGTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGCTTTTTAAAGAGATTTATGATGTTTATTCATTTTCTGTGATTCCGGCTGTGGGAGAACTAGTGGCCGGTGATCGCCAGTCATACCAATACTTGGTTGAGAGTATCCGCCGGTTTCCAAATCAGGAAAAGTTTGCTCAGATGATCCAAGAAGCCGGTTTCGAGAGGGTAGAATACGAAAATCTGGTGGGTGGTGTGGTTGCCATTCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCAAGTTTGATGGATACTTTACTGTTACTCCTACGGCAACGGCAAGGTCTTGTGAAGCGGGCGTTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCAATAAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTT AGATGAAAGGCTTTTGACAGCCCAGCTTTACTGAAAAGCATAAAATGTT GTTTTGACAACCAAAACAAACAACTAAAAGGGAGTCACA ]
[+] EMBL CB678719 [ AATCTGACGCCGCCGCCGGCATCCCTGACTCACCGACGCGGCTGCACCAGGCGCCGCCGCCGCCGCCTCCGCCTTGATCGTAAGGAAGTAAGTTTAGGAGCACCATGGCTCTGCGATCGGCGGCCGGTAGGCTGGCGTCGTCCAGCCGCCGCCGCCTCCTCTCTCCGCCCACCAGCATCCACACGGCCTTCCTCCACTCCCACGCCACCAGCTTCGGATACAAGCAAGTAGCTGAAGAGGACAAAAGCAAATTGGTCGGTAACGTCTTCAGCAGCGTCGCCTCCAGTTACGATCTCATGAACGATCTTATGAGCGTTGGACTACATAGGTTGTGGAAGGACAGGCTCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAGGGGATGTTGCCTTCCGTGCGCTCGAGAGAATCAATAGCGTGAGCCATAGAGCTATGCAGGGTACTCTTACTGATATTGAAGAAGAAACACAAATCTATGTTTGTGACATTAATCCAAATATGCTGAATGTTGGAAAGAAACGTGCTTCAGAAAGAGGATACAAAGAAGGCCATTGCCTTAGCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATACTATTGCGTTTGGGATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATAGAGTCCTAAAGCGAGGGGGAAAGTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGCTTTTTAAga ]
[-] EMBL CB678720 [ ATATGCTGAATGTTGGAAAGAAACGTGTTTCAGAAAGAGGATACAAAGAAGGCCATTGCCTTAGCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATACTATTGCGTTTGGGATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATAGAGTCCTAAAGCGAGGGGGAAGGTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGCTTTTTAAAGAGATTTATGATGTTTATTCATTTTCTGTGATTCCGGCTGTGGGAGAACTAGTGGCCGGTGATCGCCAGTCATACCAATACTTGGTTGAGAGTATCCGCCGGTTTCCAAATCAGGAAAAGTTTGCTCAGATGATCCAAGAAGCCGGATTTGAGAGGGTAGAATACGAAAATCTGGTGGGTGGTGTGGTTGCCATTCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCAAGTTTGATGGATACTTTACTGTTACTCCTACGGCAACGGCAAGGTCTTGTGAAGCGGGCGTTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCAATAAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTT AGATGAAAGGCTTTTGACAGCCCAGCTTTACTGAAAAGCATAAAATGTT GTTTTGACAACCAAAACAAACAACTAAAAGGGGGTCACACTAGATTGACAGAAAAGTTAAAAAA]
[+] EMBL AU030970 [ AGTTTGCTCAGATGATCCAAGAAGCCGGATTTGAGAGGGTAGAATACGAAAATCTGGTGGGTGGTGTGGTTGCCATTCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCAAGTTTGATGGATACTTTACTGTTACNCCTACGGCAACGGCAAGGTCTTGTGAAGCGGGCGTTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCAATAAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTTAAGATGAAAGGCTTTTGACAGCCCAGCTTTACTGGAAAGCATTAAATGTTGGTTTGGCCANCCAAACCAACCAc ]
consensusID : consensus_8680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence
[TACATGTTTCTTGTATTTATTTTTTTTAGATGAAAGGCTTTTGACAGCCCNGCTTTNNTGAAAAGNATNAAATGTTGTTTTGACANCCAAAACAAACAACTAAAAGGNTGTNACNCTTGNTTGACNGANAAGTTNCNGNNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU095179 [TACATGTTTCTTGTATTTATTTTTTTTAGATGAAAGGCTTTTGACAGCCCNGCTTTNNTGAAAAGNATNAAATGTTGTTTTGACANCCAAAACAAACAACTAAAAGGNTGTNACNCTTGNTTGACNGANAAGTTNCNGNNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8680#0 CAATAATAGCCCACACAACCCTAGGCTGCGCTAGTGTCGTCGGTCCCCATCCCATTCGGC 60
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 CACCGATCCCAATCTCAATCTGACGCCGCCGCCGGCATCCCTGACTCACCGACGCGGCTG 120
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 CACCAGGCGCCGCCGCCGCCGCCTCCGCCTTGATCGTAAGGAAGTAAGTTTGGAGCACCA 180
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 TGGCTCTGCGATCGGCGGCCGGTAGGCTGGCGTCGTCCAGCCGCCGCCGCCTCCTCTCTC 240
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 CGCCCACCAGCATCCACACAGCCTTCCTCCACTCCCACGCCACCAGCTTCGGATACAAGC 300
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 AAGTAGCTGAAGAGGACAAAAGCAAATTGGTCGGTAACGTCTTCAGCAGCGTCGCCTCCA 360
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 GTTACGATCTCATGAACGATCTTATGAGCGTTGGACTACATAGGTTGTGGAAGGACAGGC 420
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 TCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAG 480
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 GGGATGTTGCCTTCCGTGCGCTCGAGAGAATCAATAGCGTGAGCCATAGAGCTATGCAGG 540
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 GTACTCTTACTGATATTGAAGAAGAAACACAAATCTATGTTTGTGACATTAATCCAAATA 600
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 TGCTGAATGTTGGAAAGAAACGTGCTTCAGAAAGAGGATACAAAGAAGGCCATTGCCTTA 660
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 GCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATA 720
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 CTATTGCGTTTGGGATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATA 780
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 GAGTCCTAAAGCGAGGGGGAAGGTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGC 840
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 TTTTTAAAGAGATTTATGATGTTTATTCATTTTCTGTGATTCCGGCTGTGGGAGAACTAG 900
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 TGGCCGGTGATCGCCAGTCATACCAATACTTGGTTGAGAGTATCCGCCGGTTTCCAAATC 960
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 AGGAAAAGTTTGCTCAGATGATCCAAGAAGCCGGATTTGAGAGGGTAGAATACGAAAATC 1020
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 TGGTGGGTGGTGTGGTTGCCATTCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCA 1080
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 AGTTTGATGGATACTTTACTGTTACTCCTACGGCAACGGCAAGGTCTTGTGAAGCGGGCG 1140
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 TTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCA 1200
consensus_8680#1 ------------------------------------------------------------
consensus_8680#0 ATAAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTTAGATGAAAGGC 1260
consensus_8680#1 ----------------------TACATGTTTCTTGTATTTATTTTTTTTAGATGAAAGGC 38
**************************************
consensus_8680#0 TTTTGACAGCCCAGCTTTACTGAAAAGCATAAAATGTTGTTTTGACAACCAAAACAAACA 1320
consensus_8680#1 TTTTGACAGCCCNGCTTTNNTGAAAAGNATNAAATGTTGTTTTGACANCCAAAACAAACA 98
************ ***** ******* ** **************** ************
consensus_8680#0 ACTAAAAGGGAGTCACACTAGATTGACAGAAAAGTTAAAAAA------------------ 1362
consensus_8680#1 ACTAAAAGGNTGTNACNCTTGNTTGACNGANAAGTTNCNGNNTAAAAAAAAAAAAAAAAA 158
********* ** ** ** * ***** ** *****
consensus_8680#0 --------------------
consensus_8680#1 AAAAAAAAAAAAAAAAAAAA 178
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||