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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1221 fasta sequence
[TCATTAGCCAAGGCCAAGCAGGCGCGGCTGCTTAGCTTATAAAGAGACCAGATAGTACTACTCAGCTTAGCACACCCAAACCGCGCGCCATCTCACCAAACCAAGGGAGAAGCTTAGCTCCGCCAACTAGCTCGCGCTCGCGTGTAGCGGATAAGCGGAGTATCGATCGATGGATCGGACGTCAGCCGTGCCGGGGAGAGTGAGCGACCCGGGGTCCGCGTGGTTCGGCGGCGGCGAGAGGAGCTCGTCGGCCGGGCCGGGGCGCAACGTGCGGCTCATCGCCACCGCCGTCGCCGCGTTCGTGTCCGTGCTCGGGCTGGCCCTGTTCCTCCACCTCTACGTCTGCCACGTACGCCGCCGGAACCGCAGGCGCGCGGCGGAAGCGGCCGCGCTGGCGACCGTGAACGCGGGGGCGCCGCCCAAGCAGGTCGGGCTGGACCCGTCGGCCATCGCGGCGCTGCCGACCGCGGCGTACGGGAAGGTGGCGGGCGGCGACGCGGCGGGCGGCACCACCGAGTGCGCCATCTGCCTCGGCGCCATGCAGGAGGCGGACGCGGTGCGCGTGCTGCCGGCCTGCCGCCACGTGTTCCACGTCGCCTGCATCGACAAGTGGCTCGCGTCCAGCTCGTCGTGCCCGGTCTGCCGCGCCGGGGTGGAGCCGCCGCCGCCGCCTCCGTCAACGGCGGCGGCGAGGTGCGTGCACGAGAAGCAGGACGCGGAGAAGGAGGAGGCGGCCGCCGGTAGCTCGGCGCCGGTGCGGGTGCTCGGCGCGTCGCTAATGAAGATGCTGAGCAGGGAGAGACCGTCGCCGAGGAGGCAGCCGGGAGTCCACGCCGTGGAAATGGAAGACTTGGAAAGCCAGCTGCCGCGGCCGCAACAGCAGTAGCATATGCGGCGAATAATCAGCGGCCATTTTTAAGCCATTTTTTGTTTCATTTTTTGCTTCGTTTATACATCAAGCGTTCCATGTTGGTTCAGTATGAACTACATAAGTGTGTAAGTGTTTTTCTTTATTAGGAGAACGAAAGTTCTCCATTAGGTGTTTGGTGCTTGTAGCTGTCAAAGGAAAGGAGCAGACCCGTCTCTTGTATTTGTACAAAGAAGGGAAAGTGGATAAAGCTCTGATGGAATTTCTCTAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTAATGCCG]
[+] EMBL AK108853 [TCATTAGCCAAGGCCAAGCAGGCGCGGCTGCTTAGCTTATAAAGAGACCAGATAGTACTACTCAGCTTAGCACACCCAAACCGCGCGCCATCTCACCAAACCAAGGGAGAAGCTTAGCTCCGCCAACTAGCTCGCGCTCGCGTGTAGCGGATAAGCGGAGTATCGATCGATGGATCGGACGTCAGCCGTGCCGGGGAGAGTGAGCGACCCGGGGTCCGCGTGGTTCGGCGGCGGCGAGAGGAGCTCGTCGGCCGGGCCGGGGCGCAACGTGCGGCTCATCGCCACCGCCGTCGCCGCGTTCGTGTCCGTGCTCGGGCTGGCCCTGTTCCTCCACCTCTACGTCTGCCACGTACGCCGCCGGAACCGCAGGCGCGCGGCGGAAGCGGCCGCGCTGGCGACCGTGAACGCGGGGGCGCCGCCCAAGCAGGTCGGGCTGGACCCGTCGGCCATCGCGGCGCTGCCGACCGCGGCGTACGGGAAGGTGGCGGGCGGCGACGCGGCGGGCGGCACCACCGAGTGCGCCATCTGCCTCGGCGCCATGCAGGAGGCGGACGCGGTGCGCGTGCTGCCGGCCTGCCGCCACGTGTTCCACGTCGCCTGCATCGACAAGTGGCTCGCGTCCAGCTCGTCGTGCCCGGTCTGCCGCGCCGGGGTGGAGCCGCCGCCGCCGCCTCCGTCAACGGCGGCGGCGAGGTGCGTGCACGAGAAGCAGGACGCGGAGAAGGAGGAGGCGGCCGCCGGTAGCTCGGCGCCGGTGCGGGTGCTCGGCGCGTCGCTAATGAAGATGCTGAGCAGGGAGAGACCGTCGCCGAGGAGGCAGCCGGGAGTCCACGCCGTGGAAATGGAAGACTTGGAAAGCCAGCTGCCGCGGCCGCAACAGCAGTAGCATATGCGGCGAATAATCAGCGGCCATTTTTAAGCCATTTTTTGTTTCATTTTTTGCTTCGTTTATACATCAAGCGTTCCATGTTGGTTCAGTATGAACTACATAAGTGTGTAAGTGTTTTTCTTTATTAGGAGAACGAAAGTTCTCCATTAGGTGTTTGGTGCTTGTAGCTGTCAAAGGAAAGGAGCAGACCCGTCTCTTGTATTTGTACAAAGAAGGGAAAGTGGATAAAGCTCTGATGGAAT ]
[-] EMBL AU029335 [ agTCGCGCTCGCGTGTAGCGGATAAGCGGAGTATCGATCGATGGATCGGACGTCAGCCGTGCCGGGGAGAGTGAGCGACCCGGGGTCCGCGTGGTTCGGCGGCGGCGAGAGGAGCTCGTCGGCCGGGCCGGGGCGCAACGTGCGGCTCATCGCCACCGCCGTCGCCGCGTTCGTGTCCGTGCTCGGGCTGGCCCTGTTCCTCCACCTCTACGTCTGCCACGTACGCCGCCGGAACCGCAGGCGCGCGGCG ]
[+] EMBL CF316146 [ CCCGTCTCTTGTATTTGTACAAAGAAGGGAAAGTGGATAAAGCTCTGATGGAATTTCTCTAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTAATGCCG]
[+] EMBL CF316177 [ CCCGTCTCTTGTATTTGTACAAAGAAGGGAAAGTGGATAAAGCTCTGATGGAATTTCTCTAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_8682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1024 fasta sequence
[TAGGGCGTCGTTCTGNANNCNCCNNNNNNNNGGNTGGGGNGATNCCCCCGCTGAGGAATTCGGCCGAGCGGCGCGGTGCTTACTTATAAAGAGACCAGATGTACTACTCAGCTTAGCACACCCAAACCGCGCGCCATCTGACCAAACCAAGGGAGAAGCTTAGCTCCGCCAACTAGCTCGCGCTCGCGTGTAGCGGATAAGCGGAGTATCGATCGATGGATCGGACGTCAGCCGTGCCGGGGAGAGTGAGCGACCCGGGGTCCGCGTGGTTCGGCGGCGGCGAGAGGAGCTCGTCTGCCGGGCCGGGGCGCAACGTGCGGCTCATCGCCACCGCCGTCGCCGCGTTCGTGTCCGTGCTCGGGCTGGCCCTGTTCCTCCACCTCTACGTCTGCCACGTACGCCGCCGGAACCGCATGCGCGCGGCGGAAGCTGCCGCGCTGGCGACCGTGAACGCGGGGGCGCCGCCCAAGCAAGTCNGGCTGGACCCGTCTGCCATCGCGGCGCTGCCGACCGCGGCGTACAGGAAGGTGGCGGGCGGCGACACTGCGGGCGGCACCACCGAGTGCGCCATTTGTCTCTGCGCCATGCATGAAGCGGACGCAGTGCGCGTGCTGTCAGGCTGCCACCACATGTTTCACATTTGCTTGATTATACAAGTGGATCGCGTCCACATCTTNTGCCCGTCTGTCGCTCCCGGTGAGACCCCTCGCATCTCTTTACAGCGCGGGAAGTGGCTCTATAATAATAAAACCGAAAGATGTTTTCGTACTCTTCTTCAGTGTTATCATTTTAAATATGTATAAATTGAACTTCTATAAACTAGATTTCTCTAATTGATTGTATAATTATTGAAATCTTTGAGTTTGAATTAAATCTGACTTAAATTCATATAATCATANTCATGTAACATTAAACTCTATATGTACTATTATCGTCTGTGCTTGTGATATAATGTCGGTATGTCATGTTTATATTCTTTAGTATTTGTCAGTGAATGTTCTGTGTATTCGAGATACATTCTCGA]
[+] EMBL AW155270 [TAGGGCGTCGTTCTGNANNCNCCNNNNNNNNGGNTGGGGNGATNCCCCCGCTGAGGAATTCGGCCGAGCGGCGCGGTGCTTACTTATAAAGAGACCAGATGTACTACTCAGCTTAGCACACCCAAACCGCGCGCCATCTGACCAAACCAAGGGAGAAGCTTAGCTCCGCCAACTAGCTCGCGCTCGCGTGTAGCGGATAAGCGGAGTATCGATCGATGGATCGGACGTCAGCCGTGCCGGGGAGAGTGAGCGACCCGGGGTCCGCGTGGTTCGGCGGCGGCGAGAGGAGCTCGTCTGCCGGGCCGGGGCGCAACGTGCGGCTCATCGCCACCGCCGTCGCCGCGTTCGTGTCCGTGCTCGGGCTGGCCCTGTTCCTCCACCTCTACGTCTGCCACGTACGCCGCCGGAACCGCATGCGCGCGGCGGAAGCTGCCGCGCTGGCGACCGTGAACGCGGGGGCGCCGCCCAAGCAAGTCNGGCTGGACCCGTCTGCCATCGCGGCGCTGCCGACCGCGGCGTACAGGAAGGTGGCGGGCGGCGACACTGCGGGCGGCACCACCGAGTGCGCCATTTGTCTCTGCGCCATGCATGAAGCGGACGCAGTGCGCGTGCTGTCAGGCTGCCACCACATGTTTCACATTTGCTTGATTATACAAGTGGATCGCGTCCACATCTTNTGCCCGTCTGTCGCTCCCGGTGAGACCCCTCGCATCTCTTTACAGCGCGGGAAGTGGCTCTATAATAATAAAACCGAAAGATGTTTTCGTACTCTTCTTCAGTGTTATCATTTTAAATATGTATAAATTGAACTTCTATAAACTAGATTTCTCTAATTGATTGTATAATTATTGAAATCTTTGAGTTTGAATTAAATCTGACTTAAATTCATATAATCATANTCATGTAACATTAAACTCTATATGTACTATTATCGTCTGTGCTTGTGATATAATGTCGGTATGTCATGTTTATATTCTTTAGTATTTGTCAGTGAATGTTCTGTGTATTCGAGATACATTCTCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8682#0 -----------------------------------------------TCATTAGCCAA-- 11
consensus_8682#1 TAGGGCGTCGTTCTGNANNCNCCNNNNNNNNGGNTGGGGNGATNCCCCCGCTGAGGAATT 60
* * **
consensus_8682#0 -GGCCAAGCAGGCGCGGCTGCTTAGCTTATAAAGAGACCAGATAGTACTACTCAGCTTAG 70
consensus_8682#1 CGGCCGAGC-GGCGCGG-TGCTTA-CTTATAAAGAGACCAGAT-GTACTACTCAGCTTAG 116
**** *** ******* ****** ****************** ****************
consensus_8682#0 CACACCCAAACCGCGCGCCATCTCACCAAACCAAGGGAGAAGCTTAGCTCCGCCAACTAG 130
consensus_8682#1 CACACCCAAACCGCGCGCCATCTGACCAAACCAAGGGAGAAGCTTAGCTCCGCCAACTAG 176
*********************** ************************************
consensus_8682#0 CTCGCGCTCGCGTGTAGCGGATAAGCGGAGTATCGATCGATGGATCGGACGTCAGCCGTG 190
consensus_8682#1 CTCGCGCTCGCGTGTAGCGGATAAGCGGAGTATCGATCGATGGATCGGACGTCAGCCGTG 236
************************************************************
consensus_8682#0 CCGGGGAGAGTGAGCGACCCGGGGTCCGCGTGGTTCGGCGGCGGCGAGAGGAGCTCGTCG 250
consensus_8682#1 CCGGGGAGAGTGAGCGACCCGGGGTCCGCGTGGTTCGGCGGCGGCGAGAGGAGCTCGTCT 296
***********************************************************
consensus_8682#0 GCCGGGCCGGGGCGCAACGTGCGGCTCATCGCCACCGCCGTCGCCGCGTTCGTGTCCGTG 310
consensus_8682#1 GCCGGGCCGGGGCGCAACGTGCGGCTCATCGCCACCGCCGTCGCCGCGTTCGTGTCCGTG 356
************************************************************
consensus_8682#0 CTCGGGCTGGCCCTGTTCCTCCACCTCTACGTCTGCCACGTACGCCGCCGGAACCGCAGG 370
consensus_8682#1 CTCGGGCTGGCCCTGTTCCTCCACCTCTACGTCTGCCACGTACGCCGCCGGAACCGCATG 416
********************************************************** *
consensus_8682#0 CGCGCGGCGGAAGCGGCCGCGCTGGCGACCGTGAACGCGGGGGCGCCGCCCAAGCAGGTC 430
consensus_8682#1 CGCGCGGCGGAAGCTGCCGCGCTGGCGACCGTGAACGCGGGGGCGCCGCCCAAGCAAGTC 476
************** ***************************************** ***
consensus_8682#0 GGGCTGGACCCGTCGGCCATCGCGGCGCTGCCGACCGCGGCGTACGGGAAGGTGGCGGGC 490
consensus_8682#1 NGGCTGGACCCGTCTGCCATCGCGGCGCTGCCGACCGCGGCGTACAGGAAGGTGGCGGGC 536
************* ****************************** **************
consensus_8682#0 GGCGACGCGGCGGGCGGCACCACCGAGTGCGCCATCTGCCTCGGCGCCATGCAGGAGGCG 550
consensus_8682#1 GGCGACACTGCGGGCGGCACCACCGAGTGCGCCATTTGTCTCTGCGCCATGCATGAAGCG 596
****** * ************************** ** *** ********** ** ***
consensus_8682#0 GACGCGGTGCGCGTGCTGCCGGCCTGCCGCCACGTGTTCCACGTC-GCCTGCATCGACAA 609
consensus_8682#1 GACGCAGTGCGCGTGCTGTCAGGCTGCCACCACATGTTTCACATTTGCTTGATTATACAA 656
***** ************ * * ***** **** **** *** * ** ** * ****
consensus_8682#0 GTGGCTCGCGTCCAGCTCGTCGTGCCCGGTCTGCCGCGCCGGGGTGGAGCCGCCGCCGCC 669
consensus_8682#1 GTGGATCGCGTCCACATC-TTNTGCCCG-TCTGTCGCTCCCGG-TGAGACCCC-----TC 708
**** ********* ** * ****** **** *** ** ** ** ** * *
consensus_8682#0 GCCTCCGTCAACGGCGGCGGCGAGGTGCGTGCACGAGAAGCAGGACGCGGAGAAGGAGGA 729
consensus_8682#1 GCATCTCTTTACAGCG-CGG-GAAGTGGCTCTATAATAATAAAACCG--------AAAGA 758
** ** * ** *** *** ** *** * * * ** * ** * **
consensus_8682#0 GGCGGCCGCCGGTAGCTCGGCGCCGGTGCGGGTGCTCGGCGCGT-CGCTAATGAAGATGC 788
consensus_8682#1 TGTTTTCGT-----ACTCTTCTTCAGTGTTATCATTTTAAATATGTATAAATTGAACTTC 813
* ** *** * * *** * * *** * * *
consensus_8682#0 TGAGCAGGGAGAGACCGTCGCCGAGGAGGCAGCCG--GGAGTCCACGCCGTGGAAATGGA 846
consensus_8682#1 TATAAACTAGATTTCTCTAATTGATTGTATAATTATTGAAATCTTTGAGTTTGAATTAAA 873
* * * * ** * * * ** * * *** * *
consensus_8682#0 A--GACTTGGAAAGCCAGCTGCCGCGGCCGCAACAGCAGTAGCATATGCGGCGAATAATC 904
consensus_8682#1 TCTGACTTA-AATTCATATAATCATANTCATG-TAACATTAAACTCTATA-TGTACTATT 930
***** ** * * * * ** ** * * * * **
consensus_8682#0 AGCGGCCATTTTTAAGCCATTTTTTGTTTCATTTTTTGCTTCGTTTATACATCAAGCGTT 964
consensus_8682#1 ATCGTCTGTGCTTGTGATATAATGT-CGGTATGTCATGTTTATATTCTTTAGTATTTGT- 988
* ** * * ** * ** * * ** * ** ** ** * * * **
consensus_8682#0 CCATGTTGGTTCAGTATGAACTACATAAGTGTGTAAGTGTTTTTCTTTATTAGGAGAACG 1024
consensus_8682#1 CAGTGAATGTTCTGTGTATTCGAGATACATTCTCGA------------------------ 1024
* ** **** ** * * * *** * *
consensus_8682#0 AAAGTTCTCCATTAGGTGTTTGGTGCTTGTAGCTGTCAAAGGAAAGGAGCAGACCCGTCT 1084
consensus_8682#1 ------------------------------------------------------------
consensus_8682#0 CTTGTATTTGTACAAAGAAGGGAAAGTGGATAAAGCTCTGATGGAATTTCTCTAGGCAAA 1144
consensus_8682#1 ------------------------------------------------------------
consensus_8682#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1204
consensus_8682#1 ------------------------------------------------------------
consensus_8682#0 AAACCCCTGTAATGCCG 1221
consensus_8682#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||