These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1255 fasta sequence [CCCTCCCGATTTTCTTCGCTTTTTCTCTGTCCCCTCCATCAGCGCCTCCCTCCCACCCGCATCTTCTTCCACCTCCTCCCATCCATCCGAGCTCCTTCCCTTCCACCTCCCATCCGTCGACGCCAACGCCGGTGGTGCGGCGGCCAACCTGGCCCATGCGCCGCCGCCACCGGTGCCCAACCTGGCCCGTGCGGTGGGGGCACCGCCGGGGAAGCGAATCGAGGTGGTGTGGGAGCGGGAGAACACGCTGCTCTCGTTCGGCCAGGCCGCCGCGCACGCCGCCGTCGCCTTCGTCGAGTTCAACGTCCAGTTTACGGGCTGGCGGCAGAATGCGGCCTAGCGGCAGGGTTCGCGGGACGTGGTGGTTGCTAGGCAAAGAGCCGCGTCCAGTGGCGGAAGGCGTTTGTTTTGACGACTTGGTGTTTGTCCCTGACTCGGATGATGAAGGGGCTGGCAATGAGTTCAACTCACAAGGTTTTGACGACGAATTTGTGCCTGAAACACAACAAGATGTTCCAATCGAGGAGATTGGCATAGGGTTCCTCTCTTATTTATTTAATTATTAGTCCTTTCCATTCAATTTTGTTAAATAATGTGCTTTTTGATGTTCCATTTATTTCTCCTTACGGTGCAGCCATCCTGTGACAAGCAAATCAGGAGGGCCGCGCCAGCTCGGAGTGCATCCTCGCTTGGGTACAATGTTGCACGATTGGCTTCGGGCTATTTCAGAGTATGAGAAGCCAAGCATCGACATGACAACCATCGAGAAGGCATGGGCCGATGAGAAAAAGGCAATCGCTGATGCGGACTATGAGGGAAATCCAAGCAAGGTGAACACAAGCTCCGAGAAGAAGGCATGTGTCGACGAGGGGAAGTCAATCTCCGATGCAGAAACTGATGATGAGGGCGTCGGTGTGCCTGAGAAGAAGGCATGCATCGCCGAGGGAAAGTCAATCTCCGACGCAGAGACTGATGATGAGGGCGTCGGTGTGCCTCGGAATTTACAGATGAAAGATTTGCACGATATCATGTTTCCTACCTGCTGAATGTGATTGTGTTGTGGTATTTTATTGTGGAAATGCACAATGGACATAGGAGTACTTAGTGCAATATGGATGTAAGACTACCATGTTTATAAGTGTACAAATTACCGTAGTGTTCCATATGGTTGCCAGACTAGTACGAAGTATTTTGTTATGGAAATGCCCTAGTTATAGTCATATACTCCTATAATATATTGTTCTAATGATTGTAG] [+] EMBL AK071617 [CCCTCCCGATTTTCTTCGCTTTTTCTCTGTCCCCTCCATCAGCGCCTCCCTCCCACCCGCATCTTCTTCCACCTCCTCCCATCCATCCGAGCTCCTTCCCTTCCACCTCCCATCCGTCGACGCCAACGCCGGTGGTGCGGCGGCCAACCTGGCCCATGCGCCGCCGCCACCGGTGCCCAACCTGGCCCGTGCGGTGGGGGCACCGCCGGGGAAGCGAATCGAGGTGGTGTGGGAGCGGGAGAACACGCTGCTCTCGTTCGGCCAGGCCGCCGCGCACGCCGCCGTCGCCTTCGTCGAGTTCAACGTCCAGTTTACGGGCTGGCGGCAGAATGCGGCCTAGCGGCAGGGTTCGCGGGACGTGGTGGTTGCTAGGCAAAGAGCCGCGTCCAGTGGCGGAAGGCGTTTGTTTTGACGACTTGGTGTTTGTCCCTGACTCGGATGATGAAGGGGCTGGCAATGAGTTCAACTCACAAGGTTTTGACGACGAATTTGTGCCTGAAACACAACAAGATGTTCCAATCGAGGAGATTGGCATAGGGTTCCTCTCTTATTTATTTAATTATTAGTCCTTTCCATTCAATTTTGTTAAATAATGTGCTTTTTGATGTTCCATTTATTTCTCCTTACGGTGCAGCCATCCTGTGACAAGCAAATCAGGAGGGCCGCGCCAGCTCGGAGTGCATCCTCGCTTGGGTACAATGTTGCACGATTGGCTTCGGGCTATTTCAGAGTATGAGAAGCCAAGCATCGACATGACAACCATCGAGAAGGCATGGGCCGATGAGAAAAAGGCAATCGCTGATGCGGACTATGAGGGAAATCCAAGCAAGGTGAACACAAGCTCCGAGAAGAAGGCATGTGTCGACGAGGGGAAGTCAATCTCCGATGCAGAAACTGATGATGAGGGCGTCGGTGTGCCTGAGAAGAAGGCATGCATCGCCGAGGGAAAGTCAATCTCCGACGCAGAGACTGATGATGAGGGCGTCGGTGTGCCTCGGAATTTACAGATGAAAGATTTGCACGATATCATGTTTCCTACCTGCTGAATGTGATTGTGTTGTGGTATTTTATTGTGGAAATGCACAATGGACATAGGAGTACTTAGTGCAATATGGATGTAAGACTACCATGTTTATAAGTGTACAAATTACCGTAGTGTTCCATATGGTTGCCAGACTAGTACGAAGTATTTTGTTATGGAAATGCCCTAGTTATAGTCATATACTCCTATAATATATTGTTCTAATGATTGTAG] consensusID : consensus_869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CCACGCCTCCTCCACCAATGGCGCTCCCGGCGGCGACGGCCCGCGCGGCGGCGCTGTGCCGGATCGCGGCGTGCGCGTCGGCATCGTCGGCGGCGGCGGCGGCGACCGGGGGGAGGCGCGGGGCGGAGAAGCTGCCGTTCTCGCTGGCGGAGCGGGGGATGGTGGTGGGGGGGCACCGCGGGATGGGGATGAACGCGGTGGGGGCGCCGCCGGGGGCGCGGATCGAGGCGGTGAGGGAGCGGGAGAACACGCTGCTCTCGTTCGGGCGTGCCGCCGCGCACGCCGCCGTCGCCTTCGTCGAGTTCGACGTCCAGGTTACAAAAGATGGCTGCCCAATAATCTTCCATGATGACTTCATCCTAACACAAGAAACTGATGCAGCCTATGACAAGCGCGTTACTGATCTTCTCTTGCAAGAATTTCTTTCATATGGGCCGCAAAAGAATTCCCATGAGATCTCCAAGCCATTGCTTAGACGGACCAGCGATGGCGATAGTTGTTAACTGCAGCGCAAATGATGATGATTGCCTATGCACCTTGGGAGAAGCCTTTGAAACGGGCGATCCTCGGCGTAGGATTTTACATTGACGT] [+] EMBL CA758775 [CCACGCCTCCTCCACCAATGGCGCTCCCGGCGGCGACGGCCCGCGCGGCGGCGCTGTGCCGGATCGCGGCGTGCGCGTCGGCATCGTCGGCGGCGGCGGCGGCGACCGGGGGGAGGCGCGGGGCGGAGAAGCTGCCGTTCTCGCTGGCGGAGCGGGGGATGGTGGTGGGGGGGCACCGCGGGATGGGGATGAACGCGGTGGGGGCGCCGCCGGGGGCGCGGATCGAGGCGGTGAGGGAGCGGGAGAACACGCTGCTCTCGTTCGGGCGTGCCGCCGCGCACGCCGCCGTCGCCTTCGTCGAGTTCGACGTCCAGGTTACAAAAGATGGCTGCCCAATAATCTTCCATGATGACTTCATCCTAACACAAGAAACTGATGCAGCCTATGACAAGCGCGTTACTGATCTTCTCTTGCAAGAATTTCTTTCATATGGGCCGCAAAAGAATTCCCATGAGATCTCCAAGCCATTGCTTAGACGGACCAGCGATGGCGATAGTTGTTAACTGCAGCGCAAATGATGATGATTGCCTATGCACCTTGGGAGAAGCCTTTGAAACGGGCGATCCTCGGCGTAGGATTTTACATTGACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_869#0 CCCTCCCGATTTTCTTCGCTTTTTCTCTGTCCCCTCCATCAGCGCCT-CCCTCCCACCCG 59 consensus_869#1 ----CCACGCCTCCTCCAC-----CAATGGCGCTCCCGGCGGCGACGGCCCGCGCGGCGG 51 ** * ** * * * ** * * ** * *** * *** * * * * consensus_869#0 CATCTTCTTCCACCTCCTCCCATCCATCCGAGCTCCTTCCCTTCCACCTCCCATCCGTCG 119 consensus_869#1 CG--CTGTGCCGGATCGCGGCGTGCGCGTCGGCATCGTCGGCGGCGGCGGCGGCGACCGG 109 * * * ** ** * * * ** * ** * * * * consensus_869#0 ACGCCAACGCCGG-TGGTGCGGCGGCCAACCTGGCCCATGCGCCG-----CCGCCACCGG 173 consensus_869#1 GGGGAGGCGCGGGGCGGAGAAGCTGCCGTTCTCGCTGGCGGAGCGGGGGATGGTGGTGGG 169 * *** ** ** * ** *** ** ** * ** * ** consensus_869#0 TGCCCAACCTGGCCCG--------TGCGGTGGGGGCACCGCCGGGGAAGCGAATCGAGGT 225 consensus_869#1 GGGGCACCGCGGGATGGGGATGAACGCGGTGGGGGCGCCGCCGGGGGCGCGGATCGAGGC 229 * ** * ** * *********** ********* *** ******* consensus_869#0 GGTGTGGGAGCGGGAGAACACGCTGCTCTCGTTCGGCCAGGCCGCCGCGCACGCCGCCGT 285 consensus_869#1 GGTGAGGGAGCGGGAGAACACGCTGCTCTCGTTCGGGCGTGCCGCCGCGCACGCCGCCGT 289 **** ******************************* * ******************** consensus_869#0 CGCCTTCGTCGAGTTCAACGTCCAGTTTACGGGCTGGCGGCAGAATGCGGCCTAGCGGCA 345 consensus_869#1 CGCCTTCGTCGAGTTCGACGTCCAGGTTACAAA--------AGATGGCTGCCCAATAATC 341 **************** ******** **** *** ** *** * consensus_869#0 GGGTTCGCGG-GACGTGGTGGTTGCTAGGCAAAGAGCCGCGTCCAGTGGCGGAAGGCGTT 404 consensus_869#1 --TTCCATGATGACTTCATCCTAACACAAGAAACTGATGCAGCCTATGACA-AGCGCGTT 398 * * * *** * * * * *** * ** ** ** * * ***** consensus_869#0 TGTTTTGACGACTTG-GTGTTTGTCCCTGACTCGGATGATGAAGGGGCTGGCAATGAGTT 463 consensus_869#1 ACTGATCTTCTCTTGCAAGAATTTCTTTCATATGGGCCGCAAAAGAATTCCCA-TGAGAT 457 * * **** * * ** * * ** ** * * ** **** * consensus_869#0 CAACTCACAAG-GTTTTGACGACGAATTTGTGCCTGAAACACAACAAGATGTTCCAATCG 522 consensus_869#1 CTCCAAGCCATTGCTTAGACGGACCAGCGATGGCGATAGTTGTTAACTGCAGCGCAAATG 517 * * * * * ** **** * ** * * * *** * consensus_869#0 AGGAGATTGGCATAGGGTTCCTCTCTTATTTATTT--AATTATTAGTCCTTTCCATTCAA 580 consensus_869#1 ATGATGATTGCCTATGCACCTTGGGAGAAGCCTTTGAAACGGGCGATCCTCGGCGTAGGA 577 * ** * ** ** * * * * *** ** **** * * * consensus_869#0 TTTTGTTAAATAATGTGCTTTTTGATGTTCCATTTATTTCTCCTTACGGTGCAGCCATCC 640 consensus_869#1 TTTTAC--ATTGACGT-------------------------------------------- 591 **** * * * ** consensus_869#0 TGTGACAAGCAAATCAGGAGGGCCGCGCCAGCTCGGAGTGCATCCTCGCTTGGGTACAAT 700 consensus_869#1 ------------------------------------------------------------ consensus_869#0 GTTGCACGATTGGCTTCGGGCTATTTCAGAGTATGAGAAGCCAAGCATCGACATGACAAC 760 consensus_869#1 ------------------------------------------------------------ consensus_869#0 CATCGAGAAGGCATGGGCCGATGAGAAAAAGGCAATCGCTGATGCGGACTATGAGGGAAA 820 consensus_869#1 ------------------------------------------------------------ consensus_869#0 TCCAAGCAAGGTGAACACAAGCTCCGAGAAGAAGGCATGTGTCGACGAGGGGAAGTCAAT 880 consensus_869#1 ------------------------------------------------------------ consensus_869#0 CTCCGATGCAGAAACTGATGATGAGGGCGTCGGTGTGCCTGAGAAGAAGGCATGCATCGC 940 consensus_869#1 ------------------------------------------------------------ consensus_869#0 CGAGGGAAAGTCAATCTCCGACGCAGAGACTGATGATGAGGGCGTCGGTGTGCCTCGGAA 1000 consensus_869#1 ------------------------------------------------------------ consensus_869#0 TTTACAGATGAAAGATTTGCACGATATCATGTTTCCTACCTGCTGAATGTGATTGTGTTG 1060 consensus_869#1 ------------------------------------------------------------ consensus_869#0 TGGTATTTTATTGTGGAAATGCACAATGGACATAGGAGTACTTAGTGCAATATGGATGTA 1120 consensus_869#1 ------------------------------------------------------------ consensus_869#0 AGACTACCATGTTTATAAGTGTACAAATTACCGTAGTGTTCCATATGGTTGCCAGACTAG 1180 consensus_869#1 ------------------------------------------------------------ consensus_869#0 TACGAAGTATTTTGTTATGGAAATGCCCTAGTTATAGTCATATACTCCTATAATATATTG 1240 consensus_869#1 ------------------------------------------------------------ consensus_869#0 TTCTAATGATTGTAG 1255 consensus_869#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||