These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1784 fasta sequence [TTCGTGATTGCCCGGTCGCGGCCTCGCCGCT-AACCCTAACCGATCGAATTCCTCCGAAAAAATCCAGCCATGGCGCCGGCGGCGCAG-GAGCCTTGGGCCATTCTGGCCGCAATCCCTAACGTGGTGGGGTACAAGGAGGCGAAGCGCATCTTCCCGCCGGGCACCGACATCTCCGTCGCCCGCAAGGAGGTCCCGCGAGCCTCCGTCCTGACCGTGCCGCGCCACATCTCCCTCCCGGCCTGCCTCGGACTCTACCCCTATGTCGTCGCCGCCGACCGCTCTGGCCTTCTCCTCCTCGGCACGCATCCTGTCACCTCCGCCTCCGCCATGGTCTCCTACCACATCTGTGATGCGCACACCGGTGAGGTAGTCTCCCTCCGCGACTGCAAACCAATGCGCCCCATGACCTTCTACGGCGCCGCCAACGTCGGTCTCATCATCAAGGACGACGGCTGTATGGTCGCTGAGCTCCAGCCGGGATGCAAGGGCACAAGCACCGGTGGTGCCACTCTGCTCAGCTACAAGGTGGGGGAGTGCTGCAAGTGGCGCGAGAGGGAGCTTACCTGCTCGCCCCCACTCCCGCTGGACTGGTACCCGGAGGGCGTCGTCTCCCACGGCGGGATGCTCTGGTGGGTGGACCTCTCCTACGGCCTCCTCGCGTGCGATCCCTTCGCCGAGGAGCCGAACCTGATCCACGTCCCGCTCCCACAAGTTCCCGACGAGCTTCCTGTTGATGACCAGGTTAACCGCGGTGCCCACCGCTGCGTGAAGGTGAGCGGAGGAAGGCTGATGTACGTGCAGATACACGGCAATCCTGTTGTGCCGGTGGTCAGCACATGGTTGCTCGACGAATCGACCTGCTCGCCCGGGGAGTGGGAGTGGAACCCCCAGCTCAGCGCGCCCTTGGCCGAGCTCTGGATTGACCAGAGCTATGTGGACACCATGCTGCCGTTGACCATTCCTGCCCTTGCGCTCCCCCACCCCACAGATCCTAACAGGGTATATTTCTTCCTCAAATCTTGCATCTTCGCAGCCGACCTACGGTTGAGGAAGCT-GGTGTCATTCAATAGTTTTGAGATGCTCGACCCACCGTGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCAGTATGATCCTTCAAGCA-GTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCA-ATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCAGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGGATTTATGAAAACGATCTGATACAGCATGAGCTTACTTGTGAGTTCTTGTTCTGTGCCTTTTCTTAGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAGACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATACCATGCATGCATGTGTACGTGACAGTCTTCAATGCTTGGACAGTACTATGGCTGAATATTTGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTG] [+] EMBL AK066413 [TTCGTGATTGCCCGGTCGCGGCCTCGCCGCT AACCCTAACCGATCGAATTCCTCCGAAAAAATCCAGCCATGGCGCCGGCGGCGCAG GAGCCTTGGGCCATTCTGGCCGCAATCCCTAACGTGGTGGGGTACAAGGAGGCGAAGCGCATCTTCCCGCCGGGCACCGACATCTCCGTCGCCCGCAAGGAGGTCCCGCGAGCCTCCGTCCTGACCGTGCCGCGCCACATCTCCCTCCCGGCCTGCCTCGGACTCTACCCCTATGTCGTCGCCGCCGACCGCTCTGGCCTTCTCCTCCTCGGCACGCATCCTGTCACCTCCGCCTCCGCCATGGTCTCCTACCACATCTGTGATGCGCACACCGGTGAGGTAGTCTCCCTCCGCGACTGCAAACCAATGCGCCCCATGACCTTCTACGGCGCCGCCAACGTCGGTCTCATCATCAAGGACGACGGCTGTATGGTCGCTGAGCTCCAGCCGGGATGCAAGGGCACAAGCACCGGTGGTGCCACTCTGCTCAGCTACAAGGTGGGGGAGTGCTGCAAGTGGCGCGAGAGGGAGCTTACCTGCTCGCCCCCACTCCCGCTGGACTGGTACCCGGAGGGCGTCGTCTCCCACGGCGGGATGCTCTGGTGGGTGGACCTCTCCTACGGCCTCCTCGCGTGCGATCCCTTCGCCGAGGAGCCGAACCTGATCCACGTCCCGCTCCCACAAGTTCCCGACGAGCTTCCTGTTGATGACCAGGTTAACCGCGGTGCCCACCGCTGCGTGAAGGTGAGCGGAGGAAGGCTGATGTACGTGCAGATACACGGCAATCCTGTTGTGCCGGTGGTCAGCACATGGTTGCTCGACGAATCGACCTGCTCGCCCGGGGAGTGGGAGTGGAACCCCCAGCTCAGCGCGCCCTTGGCCGAGCTCTGGATTGACCAGAGCTATGTGGACACCATGCTGCCGTTGACCATTCCTGCCCTTGCGCTCCCCCACCCCACAGATCCTAACAGGGTATATTTCTTCCTCAAATCTTGCATCTTCGCAGCCGACCTACGGTTGAGGAAGCT GGTGTCATTCAATAGTTTTGAGATGCTCGACCCACCGTGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCAGTATGATCCTTCAAGCA GTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCA ATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCAGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGGATTTATGAAAACGATCTGATACAGCATGAGCTTACTTGTGAGTTCTTGTTCTGTGCCTTTTCTTAGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAGACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATACCATGCATGCATGTGTACGTGACAGTCTTCAATGCTTGGACAGTACTATGGCTGAATATTTGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTG] [+] EMBL AU101907 [ CGCCGCTAAACCCTAACCGATCGAATTCCTCCGAAAAAATCCAGCCATGGCGCCGGCG GCAGTGAGCCTTGGGCCATTCTGGCCGCAATCCCTAACGTGGTGGGGTACAAGGAGGCGAA NGCATCTTCCCGCCGGGCACCGACATCTCCGTCGCCCGCAAGGAGGTCCCGCGAGCCTCCGTCCTGACCGTGCCGCGCCACATCTCCCTCCCGGCCTGCCTCGGACTCTACCCCTATGTCGTCGCCGCCGANCGCTCTGGCCTTCTNCTCCTCGGCACGNAT ] [+] EMBL BI809859 [ GAGGAA CTGGGTGTCATTCAATAGTTTTGAGATGCTCGACCCACCGTGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCAT GCAGTATGATCCTTCAA CACGTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCACATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCAGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGGATTTATGAAAACGATCTGATACAGCATGAGCTTACTTGTGAATTCTTGTTCTGTGCCTTTTCTTAGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTAAAAAa ] [+] EMBL AU101908 [ GCATGGCAGTATGANCCTTCAAGCA GTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCA ATTGCTTCTAAGAGCAGCTTCTCTGGTATAATNCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCAGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGGATTTATGAAAACGATCTGATACAGCATGAGCTTACTTGTGAGTTCTTGTTCTGTGCCTTTTCTTAGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAAaaaaaa ] consensusID : consensus_8693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [TNTGAGATGCTCGACCCACCGGGGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCAGTATGATCCTTCAAGCAGTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCAATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCGGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAGACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATACCATGCATGCATGTGTACGTGACAGTCTCCAATGCTTGGACAGTACTATGGCTGAATATTTGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTGAAAAAAGTCCATACTTTTGTTCTAGAGGCCAAAGAATTACCATGTTAATTGAAAAACTAATTTCAAGTCCAAAAAAAAAAAAAA] [-] EMBL CA761195 [TNTGAGATGCTCGACCCACCGGGGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCAGTATGATCCTTCAAGCAGTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCAATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCGGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAGACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATACCATGCATGCATGTGTACGTGACAGTCTCCAATGCTTGGACAGTACTATGGCTGAATATTTGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTGAAAAAAGTCCATACTTTTGTTCTAGAGGCCAAAGAATTACCATGTTAATTGAAAAACTAATTTCAAGTCCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8693#0 TTCGTGATTGCCCGGTCGCGGCCTCGCCGCTAACCCTAACCGATCGAATTCCTCCGAAAA 60 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 AATCCAGCCATGGCGCCGGCGGCGCAGGAGCCTTGGGCCATTCTGGCCGCAATCCCTAAC 120 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 GTGGTGGGGTACAAGGAGGCGAAGCGCATCTTCCCGCCGGGCACCGACATCTCCGTCGCC 180 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 CGCAAGGAGGTCCCGCGAGCCTCCGTCCTGACCGTGCCGCGCCACATCTCCCTCCCGGCC 240 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 TGCCTCGGACTCTACCCCTATGTCGTCGCCGCCGACCGCTCTGGCCTTCTCCTCCTCGGC 300 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 ACGCATCCTGTCACCTCCGCCTCCGCCATGGTCTCCTACCACATCTGTGATGCGCACACC 360 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 GGTGAGGTAGTCTCCCTCCGCGACTGCAAACCAATGCGCCCCATGACCTTCTACGGCGCC 420 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 GCCAACGTCGGTCTCATCATCAAGGACGACGGCTGTATGGTCGCTGAGCTCCAGCCGGGA 480 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 TGCAAGGGCACAAGCACCGGTGGTGCCACTCTGCTCAGCTACAAGGTGGGGGAGTGCTGC 540 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 AAGTGGCGCGAGAGGGAGCTTACCTGCTCGCCCCCACTCCCGCTGGACTGGTACCCGGAG 600 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 GGCGTCGTCTCCCACGGCGGGATGCTCTGGTGGGTGGACCTCTCCTACGGCCTCCTCGCG 660 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 TGCGATCCCTTCGCCGAGGAGCCGAACCTGATCCACGTCCCGCTCCCACAAGTTCCCGAC 720 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 GAGCTTCCTGTTGATGACCAGGTTAACCGCGGTGCCCACCGCTGCGTGAAGGTGAGCGGA 780 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 GGAAGGCTGATGTACGTGCAGATACACGGCAATCCTGTTGTGCCGGTGGTCAGCACATGG 840 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 TTGCTCGACGAATCGACCTGCTCGCCCGGGGAGTGGGAGTGGAACCCCCAGCTCAGCGCG 900 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 CCCTTGGCCGAGCTCTGGATTGACCAGAGCTATGTGGACACCATGCTGCCGTTGACCATT 960 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 CCTGCCCTTGCGCTCCCCCACCCCACAGATCCTAACAGGGTATATTTCTTCCTCAAATCT 1020 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 TGCATCTTCGCAGCCGACCTACGGTTGAGGAAGCTGGTGTCATTCAATAGTTTTGAGATG 1080 consensus_8693#1 ---------------------------------------------------TNTGAGATG 9 * ******* consensus_8693#0 CTCGACCCACCGTG-TGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCA 1139 consensus_8693#1 CTCGACCCACCGGGGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCA 69 ************ * ********************************************* consensus_8693#0 GTATGATCCTTCAAGCAGTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGC 1199 consensus_8693#1 GTATGATCCTTCAAGCAGTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGC 129 ************************************************************ consensus_8693#0 AATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAG 1259 consensus_8693#1 AATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAG 189 ************************************************************ consensus_8693#0 TTTGAAGAGAGTTTGGGATTCTGTAACCAGGCAGCAGCAAAAGCAGGAGCAGCAGCTGCA 1319 consensus_8693#1 TTTGAAGAGAGTTTGGGATTCTGTAACCAGGCGGCAGCAAAAGCAGGAGCAGCAGCTGCA 249 ******************************** *************************** consensus_8693#0 GAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAA 1379 consensus_8693#1 GAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAA 309 ************************************************************ consensus_8693#0 GTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGG 1439 consensus_8693#1 GTATGAAGGAAGGG---------------------------------------------- 323 ************** consensus_8693#0 ATTTATGAAAACGATCTGATACAGCATGAGCTTACTTGTGAGTTCTTGTTCTGTGCCTTT 1499 consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 TCTTAGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTT 1559 consensus_8693#1 -------CCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTT 376 ***************************************************** consensus_8693#0 GACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAG 1619 consensus_8693#1 GACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAG 436 ************************************************************ consensus_8693#0 ACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATA 1679 consensus_8693#1 ACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATA 496 ************************************************************ consensus_8693#0 CCATGCATGCATGTGTACGTGACAGTCTTCAATGCTTGGACAGTACTATGGCTGAATATT 1739 consensus_8693#1 CCATGCATGCATGTGTACGTGACAGTCTCCAATGCTTGGACAGTACTATGGCTGAATATT 556 **************************** ******************************* consensus_8693#0 TGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTG--------------- 1784 consensus_8693#1 TGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTGAAAAAAGTCCATACT 616 ********************************************* consensus_8693#0 ------------------------------------------------------------ consensus_8693#1 TTTGTTCTAGAGGCCAAAGAATTACCATGTTAATTGAAAAACTAATTTCAAGTCCAAAAA 676 consensus_8693#0 --------- consensus_8693#1 AAAAAAAAA 685 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||