These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 487 fasta sequence [CGCCAGGACAGGCCGCCGTTGCTCCGGCGGCCTGGAGCCCATGCGCGCAACGTCCCGGCGAGGCTTGCTCCTGACGGTGGCTCGTGGATGGCGCGCGCGTCGACCCGCCCCCGCCGAGAGGGCTGGGCCGAGTGCTCCTGATCCGCCGCCGCCGCCGGCCACC-GCACGACGAATCTTCCGGCCGCCTGAGATAGAAAGTACTAAAAATGCGAAACTTGTGGGCAATGATTGTTTGTTTGCTTCCTCCCTAATTAATTAAATTAATCTCAAATTCTTAATCACCATCAAGGACCCAAAAATCTTGTGGTTTAGGAAGGCCTCTCTTGTGGTTAACATCAAATCACAAGTCTAAATCCAAATGGATGGGACTCTAATTTTTCTGTGTAGTATTAGTATACAATGATGATAGTAC-ATTTGATTTGTTATTAATTGGTTATTAATTAAAGGTGATTTGATCAACTAAACTTTATGTGGTCCAAAAAAAAAA] [+] EMBL BI812636 [CGCCAGGACAGGCCGCCGTTGCTCCGGCGGCCTGGAGCCCATGCGCGCAACGTCCCGGCGAGGCTTGCTCCTGACGGTGGCTCGTGGATGGCGCGCGCGTCGACCCGCCCCCGCCGAGGAGGCTGGGCCGAGTGCTCCTGATCCGCCGCCGCCGCCGGCCACCAGCACGACGAATCTTCC GCCGCCTGAGATAGAAAGTACTAAAAATGCGAAACTTGT GGC ATGATTGTTTGTTTGCTTCCTCCCTAATTAATTAAATTAATCTCAAATTCTTAATCACCATCAAGGACCCAAAAATCTTGTGGTTTAGGAA GCCTCTCTTGTGGTTAACATCAAATCACAAGTCTAAATCC AATGGATGGGACTCTAATTTTTCTGTGTAGTATTAGTATACCATGATGATAGTAC ATTTGATTTGTTATTAATTGGTTATTAATTAAAGGTGATTTGATCAACTAGACTTTATGTGGTCCAAAAAAAAAA] [+] EMBL BI806486 [ GAGGGCTGGGCCGAGTGCTCCTGATCCGCCGCCGCCGCCGGCCACC GCACGACGAATCTTCCGGCCGCCTGAGATAGAAAGTACTAAAAATGCGAAACTTGTGGGCAATGATTGTTTGTTTGCTTCCTCCCTAATTAATTAAATTAATCTCAAATTCTTAATCACCATC AGGACCCAAAAATCTTGTGGTTTAGGAAGGCCTCTCTTGTGGTTAACATCAAATCACAAGTCTAAATCCAAATGGATGGGACTCTAATTTTTCTGTGTAGTATTAGTATACAATGATGATAGTAC ATTTGATTTGTTATTAATTGGTTATTAATTAAAGGTGATTTGATCAACTAAAaaaaaa ] [-] EMBL CB654904 [ AGGGCTGGGCCGAGTGCTCCTGATCCGCCGCCGCCGCCGGCCACC GCACGACGAATCTTCCGGCCGCCTGAGATAGAAAGTACTAAAAATGCGAAACTTGTGGGCAATGATTGTTTGTTTGCTTCCTCCCTAATTAATTAAATTAATCTCAAATT ] [+] EMBL CF196338 [ GCCGAGTGCTCCTGATCCGCCGCCGCCGCCGGCCACC GCACGACGAATCTTCCGGCCGCCTGAGATAGAAAGTACTAAAAATGCGAAACTTGTGGGCAATGATTGTTTGTTTGCTTCCTCCCTAATTAATTAAATTAATCTCAAATTCTTAATCACCATCAAGGACCCAAAAATCTTGTGGTTTAGGAAGGCCTCTCTTGTGGTTAACATCAAATCACAAGTCTAAATCCAAATGGATGGGACTCTAATTTTTCTGTGTAGTATTAGTATACAATGATGATAGTACAATTTGATTTGTTATTAATTGGTTATTAATTAAAGGTGATTTGATCAACTAA ] consensusID : consensus_8694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [CAGGACCCCAAAATCTTGTGGTTTAGGAAGGCCTCTCTTGTGGTTAACATCCAATCACAAGTCTAAATCCAATGGATGGGACTCNAATTTTTCTGTGTAGTATTAGTGAGACATGATGATAGTACAATTTGATTTGTTATTAATTGGTTATTAATTAAAGGTGATTNGGATCACTGAGACTTTATGTGGTCAAGAATGTCTCCCTGTATTGTATGAGTGACCACTACCACTCGATATTTTTTTCCTTCCATCTTGGCTGAGTCCTGTCTTGTGTTTGTTTATTGGTATCTCAATGTACTGGGCTTACCACTTGTATGGACAGTATTGTTACACTAACACAGTGTGTACCCCCCAGTCGTGTTAGCTTGAATGGGAAGACCATGATCAAAAAAAAAA] [+] EMBL BM038874 [CAGGACCCCAAAATCTTGTGGTTTAGGAAGGCCTCTCTTGTGGTTAACATCCAATCACAAGTCTAAATCCAATGGATGGGACTCNAATTTTTCTGTGTAGTATTAGTGAGACATGATGATAGTACAATTTGATTTGTTATTAATTGGTTATTAATTAAAGGTGATTNGGATCACTGAGACTTTATGTGGTCAAGAATGTCTCCCTGTATTGTATGAGTGACCACTACCACTCGATATTTTTTTCCTTCCATCTTGGCTGAGTCCTGTCTTGTGTTTGTTTATTGGTATCTCAATGTACTGGGCTTACCACTTGTATGGACAGTATTGTTACACTAACACAGTGTGTACCCCCCAGTCGTGTTAGCTTGAATGGGAAGACCATGATCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8694#0 CGCCAGGACAGGCCGCCGTTGCTCCGGCGGCCTGGAGCCCATGCGCGCAACGTCCCGGCG 60 consensus_8694#1 -----------------------------------------------------------C 1 consensus_8694#0 AGGCTTGCTCCTGACGGTGGCTCGTGGATGGCGCGCGCGTCGACCCGCCCCCGCCGAGAG 120 consensus_8694#1 AGGACCCCAAAATCTTGTGGTTTAGGAAGGCCTCTCTTGT-GGTTAACATCCAATCACAA 60 *** * **** * * * * * * * ** * * ** * * consensus_8694#0 GGCTGGGCCGAGTGCTCCTGATCCGCCGCCGCCGCCGGCCACCGCACGACGAATCTTCCG 180 consensus_8694#1 GTCTAAATCCAATGGATGGGACTCN--AATTTTTCTGTGTAGTATTAGTGAGACATGATG 118 * ** * * ** ** * * * * * * * * consensus_8694#0 GCCGCCTGAGATAGAAAGTACTAAAAATGCGAAACTTGTGGGCAATGATTGT--TTGTTT 238 consensus_8694#1 ATAG--TACAATTTGATTTGTTATTAATTGGTTATTAATTAAAGGTGATTNGGATCACTG 176 * * ** * * ** *** * * * * ***** * * consensus_8694#0 GCTTCCTCCCTAATTAATTAAATTAATCTCAAATTCTTAATCACCATCAAGGACCCAAAA 298 consensus_8694#1 AGACTTTATGTGGTCAAGAATGTCTCCCTGTATTGTATGAGTGACCACTACCACTCGATA 236 * * * ** * * ** * * * * * * * ** * * * consensus_8694#0 ATCTTGTGGTTTAGGAAGGCCTCTCTTGTGGTTAACATCAAATCACAAGTCTAAATCCAA 358 consensus_8694#1 TTTTTTTCCTTCCATCTTGGCTGAGTCCTGTCTTGTGTTTGTTTATTGGT----ATCTCA 292 * ** * ** * ** * ** * * * * ** *** * consensus_8694#0 ATGGATGGGACTC-TAATTTTTCTGTGTAGTATTAGTATACAATGATGATA-GTACATTT 416 consensus_8694#1 ATGTACTGGGCTTACCACTTGTATGGACAGTATTGTTACACTAACACAGTGTGTACCCCC 352 *** * ** ** * ** * ** ****** ** ** * * * **** consensus_8694#0 GATTTGTTATTAATTGGTTATTAATTAAAGGTGATTTGATCAACTAAACTTTATGTGGTC 476 consensus_8694#1 CAGTCGTGTTAGCTTGAATGGGAA--GACCATGATCAAAAAAAAAA-------------- 396 * * ** * *** * ** * **** * ** * consensus_8694#0 CAAAAAAAAAA 487 consensus_8694#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||