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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 995 fasta sequence
[CGACCTCGCCCTCTCCCGCCACCGCTGGGAGCGCCTCCCCGACATGCGCGTCCCGCGAGGGAGCTTCGCCTGCGCCCCCGCGCCCAGCGGCGGAGTCATCGTGGCCGGAGGTGGCTCCAGGCACCCGACGTTCCCCTCCTACGGCAGCCGCACCAGCGGCGTCGAGTTGTACGACGCCGCAGCGCGCGCGTGGCGCGTCACCGCGGCGATGCCCAGGGACCGGGCCGGGTGCGTGGGGTTCGTCGCGCACGGGGCGGGGGATGGGAGGGAGGATGAGTTCTGGGTGATGGGCGGGTACGACGGCTACACCACGGTGGGGGGAGTGGTGCCTAGTGACGTATACTGCCGGGACGCGGTGGCGCTCGGGCTGTGGAGCGGCAAGTGGAGGGAGATTGGGGACATGTGGGAGGAATGGGAGAGAGAGCGCCTTGGGCCGGTGGCTGTCATTTCTGCTGAAGATGGAAGGGTCACAGAGGTGTTCATGCTCGATGGTCATGATATCTTCAGGTATAACTTCTCTTCGAACAGTTGGTCAAAGGAAGCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTTTCATAGCAATGAATGGCGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAACCTCAAGTCCATGGAAGCAGTCGAAGAAGAGGTTGGCGCTGGAGTTTCAAGTTTACAACCCTGCAGCAAAGATGTGGAGGGTGCTCACCACACATCCCCCTGTTAACGTACCAATTGATTTCAGGACTGCAGCTCTCTGTACGGTTGAGCTGTAGGTTTCTTGATGATCACCATTCACTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCAAATTTAGATGTAAATGAGAACACCATCCAATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGAC]
[+] EMBL AK105757 [CGACCTCGCCCTCTCCCGCCACCGCTGGGAGCGCCTCCCCGACATGCGCGTCCCGCGAGGGAGCTTCGCCTGCGCCCCCGCGCCCAGCGGCGGAGTCATCGTGGCCGGAGGTGGCTCCAGGCACCCGACGTTCCCCTCCTACGGCAGCCGCACCAGCGGCGTCGAGTTGTACGACGCCGCAGCGCGCGCGTGGCGCGTCACCGCGGCGATGCCCAGGGACCGGGCCGGGTGCGTGGGGTTCGTCGCGCACGGGGCGGGGGATGGGAGGGAGGATGAGTTCTGGGTGATGGGCGGGTACGACGGCTACACCACGGTGGGGGGAGTGGTGCCTAGTGACGTATACTGCCGGGACGCGGTGGCGCTCGGGCTGTGGAGCGGCAAGTGGAGGGAGATTGGGGACATGTGGGAGGAATGGGAGAGAGAGCGCCTTGGGCCGGTGGCTGTCATTTCTGCTGAAGATGGAAGGGTCACAGAGGTGTTCATGCTCGATGGTCATGATATCTTCAGGTATAACTTCTCTTCGAACAGTTGGTCAAAGGAAGCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTCTCATAGCAATGAATGGCGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAACCTCAAGTCCATGGAAGCAGTCGAAGAAGAGGTTGGCGCTGGAGTTTCAAGTTTACAACCCTGCAGCAAAGATGTGGAGGGTGCTCACCACACATCCCCCTGTTAACGTACCAATTGATTTCAGGACTGCAGCTCTCTGTACGGTTGAGCTGTAGGTTTCTTGATGATCACCATTCACTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCAAATTTAGATGTAAATGAGAACACCATCCAATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATGATCTAATAAAAAGGAC]
[+] EMBL AK073932 [CGACCTCGCCCTCTCCCGCCACCGCTGGGAGCGCCTCCCCGACATGCGCGTCCCGCGAGGGAGCTTCGCCTGCGCCCCCGCGCCCAGCGGCGGAGTCATCGTGGCCGGAGGTGGCTCCAGGCACCCGACGTTCCCCTCCTACGGCAGCCGCACCAGCGGCGTCGAGTTGTACGACGCCGCAGCGCGCGCGTGGCGCGTCACCGCGGCGATGCCCAGGGACCGGGCCGGGTGCGTGGGGTTCGTCGCGCACGGGGCGGGGGATGGGAGGGAGGATGAGTTCTGGGTGATGGGCGGGTACGACGGCTACACCACGGTGGGGGGAGTGGTGCCTAGTGACGTATACTGCCGGGACGCGGTGGCGCTCGGGCTGTGGAGCGGCAAGTGGAGGGAGATTGGGGACATGTGGGAGGAATGGGAGAGAGAGCGCCTTGGGCCGGTGGCTGTCATTTCTGCTGAAGATGGAAGGGTCACAGAGGTGTTCATGCTCGATGGTCATGATATCTTCAGGTATAACTTCTCTTCGAACAGTTGGTCAAAGGAAGCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTTTCATAGCAATGAATGGCGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAACCTCAAGTCCATGGAAGCAGTCGAAGAAGAGGTTGGCGCTGGAGTTTCAAGTTTACAACCCTGCAGCAAAGATGTGGAGGGTGCTCACCACACATCCCCCTGTTAACGTACCAATTGATTTCAGGACTGCAGCTCTCTGTACGGTTGAGCTGTAGGTTTCTTGATGATCACCATTCACTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCAAATTTAGATGTAAATGAGAACACCATCCAATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGAC]
[+] EMBL CF305065 [ AGAGCGCCTTGGGCCGGTGGCTGTCATTTCTGCTGAAGATGGAAGGGTCACAGAGGTGTTCATGCTCGATGGTCATGATATCTTCAGGTATAACTTCTCTTCGAACAGTTGGTCAAAGGAAGCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTTTCATAGCAATGAATGGCGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAACCTCAAGTCCATGGAAGCAGTCGAAGAAGAGGTTGGCGCTGGAGTTTCAAGTTTACAACCCTGCAGCAAAGATGTGGAGGGTGCTCACCACACATCCCCCTGTTAACGTACCAATTGATTTCAGGACTGCAGCTCTCTGTACGGTTGAGCTGTAGGTTTCTTGATGATCACCATTCACTGTAC ]
[+] EMBL CB685194 [ AGGACCCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTTTCATAGCAATGAATGGCGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAACCTCAAGTCCATGGAAGCAGTCGAAGAAGAGGTTGGCGCTGGAGTTTCAAGTTTACAACCCTGCAGCAAAGATGTGGAGGGTGCTCACCACACATCCCCCTGTTAACGTACCAATTGATTTCAGGACTGCAGCTCTCTGTACGGTTGAGCTGTAGGTTTCTTGATGATCACCATTCACTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCAAATTTAGATGTAAATGAGAACACCATCCAATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGAC]
consensusID : consensus_8701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[TTCCGAAAACCCTCAAGTCCCACTGGAAGCCAGTTCGAAGAAGAGGTTGGCCGCCTGGAGTTTCCAAGTTTACAACCCCTGCAGCCACAAGATTGTTGGAGGGGTGCTCACCCACCACCATCCCCCTGTTAACGTACCCACATTGATTTCAGGACTGCAGCTCTCTGTACCGGTTGAGCCTGTAGGTTTCTTGATGATCACCCATTCACCTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCACAATTTAGATGTAACTGAGAACNCCATCCCATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGACGGTACATTGCAAAGAG]
[+] EMBL BQ906001 [TTCCGAAAACCCTCAAGTCCCACTGGAAGCCAGTTCGAAGAAGAGGTTGGCCGCCTGGAGTTTCCAAGTTTACAACCCCTGCAGCCACAAGATTGTTGGAGGGGTGCTCACCCACCACCATCCCCCTGTTAACGTACCCACATTGATTTCAGGACTGCAGCTCTCTGTACCGGTTGAGCCTGTAGGTTTCTTGATGATCACCCATTCACCTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCACAATTTAGATGTAACTGAGAACNCCATCCCATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGACGGTACATTGCAAAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8701#0 CGACCTCGCCCTCTCCCGCCACCGCTGGGAGCGCCTCCCCGACATGCGCGTCCCGCGAGG 60
consensus_8701#1 ------------------------------------------------------------
consensus_8701#0 GAGCTTCGCCTGCGCCCCCGCGCCCAGCGGCGGAGTCATCGTGGCCGGAGGTGGCTCCAG 120
consensus_8701#1 ------------------------------------------------------------
consensus_8701#0 GCACCCGACGTTCCCCTCCTACGGCAGCCGCACCAGCGGCGTCGAGTTGTACGACGCCGC 180
consensus_8701#1 ------------------------------------------------------------
consensus_8701#0 AGCGCGCGCGTGGCGCGTCACCGCGGCGATGCCCAGGGACCGGGCCGGGTGCGTGGGGTT 240
consensus_8701#1 ------------------------------------------------------------
consensus_8701#0 CGTCGCGCACGGGGCGGGGGATGGGAGGGAGGATGAGTTCTGGGTGATGGGCGGGTACGA 300
consensus_8701#1 ------------------------------------------------------------
consensus_8701#0 CGGCTACACCACGGTGGGGGGAGTGGTGCCTAGTGACGTATACTGCCGGGACGCGGTGGC 360
consensus_8701#1 ------------------------------------------------------------
consensus_8701#0 GCTCGGGCTGTGGAGCGGCAAGTGGAGGGAGATTGGGGACATGTGGGAGGAATGGGAGAG 420
consensus_8701#1 ------------------------------------------------------------
consensus_8701#0 AGAGCGCCTTGGGCCGGTGGCTGTCATTTCTGCTGAAGATGGAAGGGTCACAGAGGTGTT 480
consensus_8701#1 ------------------------------------------------------------
consensus_8701#0 CATGCTCGATGGTCATGATATCTTCAGGTATAACTTCTCTTCGAACAGTTGGTCAAAGGA 540
consensus_8701#1 ------------------------------------------------------------
consensus_8701#0 AGCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTTTCATAGCAATGAATGG 600
consensus_8701#1 ------------------------------------------------------------
consensus_8701#0 CGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAA--CCTCAAGTCCA--TGGA 656
consensus_8701#1 ---------------------------------TTCCGAAAACCCTCAAGTCCCACTGGA 27
* ***** ********** ****
consensus_8701#0 AGCAG--TCGAAGAAGAGGTTGGCG--CTGGAGTTTC-AAGTTTACAACCC-TGCAGC-- 708
consensus_8701#1 AGCCAGTTCGAAGAAGAGGTTGGCCGCCTGGAGTTTCCAAGTTTACAACCCCTGCAGCCA 87
*** ***************** ********** ************* ******
consensus_8701#0 -AAAGATGT--GGAGGGTGCTCACCA--CAC-ATCCCCCTGTTAACGTACCAA--TTGAT 760
consensus_8701#1 CAAGATTGTTGGAGGGGTGCTCACCCACCACCATCCCCCTGTTAACGTACCCACATTGAT 147
** *** * *********** *** ******************* * *****
consensus_8701#0 TTCAGGACTGCAGCTCTCTGTAC-GGTTGAGC-TGTAGGTTTCTTGATGATCACC-ATTC 817
consensus_8701#1 TTCAGGACTGCAGCTCTCTGTACCGGTTGAGCCTGTAGGTTTCTTGATGATCACCCATTC 207
*********************** ******** ********************** ****
consensus_8701#0 AC-TGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCA-AATTTAGATGTAAATGAG 875
consensus_8701#1 ACCTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCACAATTTAGATGTAACTGAG 267
** ************************************** ************* ****
consensus_8701#0 AACACCATCCAATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCA 935
consensus_8701#1 AACNCCATCCCATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCA 327
*** ****** *************************************************
consensus_8701#0 TTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGAC 995
consensus_8701#1 TTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGAC 387
************************************************************
consensus_8701#0 ----------------
consensus_8701#1 GGTACATTGCAAAGAG 403
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||