These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 705 fasta sequence [GGCGACAGCTCCAGCAACAGCAACAGCACGGCGTGGACATGCGGCAGCGTCGTCGTCGGCGGCGCGGGCGAGCTGCCGCCGCCGCCGCTGCTGCCGCACATGGACATGTTCGGCCGGGTCGACGCCGAGCCGCCGCCGTACCCGCCGTTCGACGTCCAGGCCAGGTTCAGCCCCTGGCACCACCACCACCACCACCACCACGAGCCGACGCTGCCGACGCCGCCGCAAAGGTTGGACGGCGGCGGCGGCGCCGCGGCGAGCTTCCCGATCC-GGTCGCTGTCGCGGGACATGCCGGAGTCCTGCTTCGACCTCGGCCGCGGCGCGCTCGACGACGAGTTCGGCGTCGACTTCCTCTGACCTCTCGAGATCGCAAGCGCGTGCAAGTGTAACCGGACACGTCACACG-GCCACGTATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAATCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACG] [+] EMBL AK065915 [GGCGACAGCTCCAGCAACAGCAACAGCACGGCGTGGACATGCGGCAGCGTCGTCGTCGGCGGCGCGGGCGAGCTGCCGCCGCCGCCGCTGCTGCCGCACATGGACATGTTCGGCCGGGTCGACGCCGAGCCGCCGCCGTACCCGCCGTTCGACGTCCAGGCCAGGTTCAGCCCCTGGCACCACCACCACCACCACCACCACGAGCCGACGCTGCCGACGCCGCCGCAAAGGTTGGACGGCGGCGGCGGCGCCGCGGCGAGCTTCCCGATCC GGTCGCTGTCGCGGGACATGCCGGAGTCCTGCTTCGACCTCGGCCGCGGCGCGCTCGACGACGAGTTCGGCGTCGACTTCCTCTGACCTCTCGAGATCGCAAGCGCGTGCAAGTGTAACCGGACACGTAACACG GCCACGTATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAATCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGC GTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAATT ] [-] EMBL C99554 [ CACCACCACGAGCCGACGCTGCCGACGCCGCCGCAAAGGCTGGACGGC GC GCGGCGCCGCGNCGAGCTTCCCGATCCGGGTCG TGTCGCGGGACATGCCGGAGTCCTGCTTCGACCTCGG CNCGGCGCGCTCGACGACGAGTTCGGCGTCGACTTCCTCTGACCTCTCGAGATCGCAAGCGCGTGCAAGTGTAACCGGACACGTCACACG GCCACGTATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAATCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACG] [+] EMBL AU077894 [ CGGACACGTCACNCGNGCCACGTATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAATCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAAaaaaaaaa ] consensusID : consensus_8703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CCGTGAAAANTTGTAACCCGGGNACACCGGTCACCACGGNCCACCGTAATACGGCAATGGGACCCAACGGCTTGTCCTGGCCCACCGGGAAAGATCGACGGTCAAGAAGAGACGACACGTGTCAGGAATCGGGACGGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACNGACTGANATNNANAATNATCTCTNANANNANNANNACC] [-] EMBL AU064283 [CCGTGAAAANTTGTAACCCGGGNACACCGGTCACCACGGNCCACCGTAATACGGCAATGGGACCCAACGGCTTGTCCTGGCCCACCGGGAAAGATCGACGGTCAAGAAGAGACGACACGTGTCAGGAATCGGGACGGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACNGACTGANATNNANAATNATCTCTNANANNANNANNACC] consensusID : consensus_8703#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [TATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAANCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACNTTTTTTATTATTATTGGACTAAGTTGNTCAANTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTANATATATATATGCTCAAATGTTTTTCGCCAGAATAGCNTNATACATATATACATTTGATGAAAAAAAAAAAAAAAAAANANAG] [+] EMBL AU058105 [TATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAANCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACNTTTTTTATTATTATTGGACTAAGTTGNTCAANTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTANATATATATATGCTCAAATGTTTTTCGCCAGAATAGCNTNATACATATATACATTTGATGAAAAAAAAAAAAAAAAAANANAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8703#0 GGCGACAGCTCCAGCAACAGCAACAGCACGGCGTGGACATGCGGCAGCGTCGTCGTCGGC 60 consensus_8703#2 ------------------------------------------------------------ consensus_8703#1 ------------------------------------------------------------ consensus_8703#0 GGCGCGGGCGAGCTGCCGCCGCCGCCGCTGCTGCCGCACATGGACATGTTCGGCCGGGTC 120 consensus_8703#2 ------------------------------------------------------------ consensus_8703#1 ------------------------------------------------------------ consensus_8703#0 GACGCCGAGCCGCCGCCGTACCCGCCGTTCGACGTCCAGGCCAGGTTCAGCCCCTGGCAC 180 consensus_8703#2 ------------------------------------------------------------ consensus_8703#1 ------------------------------------------------------------ consensus_8703#0 CACCACCACCACCACCACCACGAGCCGACGCTGCCGACGCCGCCGCAAAGGTTGGACGGC 240 consensus_8703#2 ------------------------------------------------------------ consensus_8703#1 ------------------------------------------------------------ consensus_8703#0 GGCGGCGGCGCCGCGGCGAGCTTCCCGATCCGGTCGCTGTCGCGGGACATGCCGGAGTCC 300 consensus_8703#2 ------------------------------------------------------------ consensus_8703#1 ------------------------------------------------------------ consensus_8703#0 TGCTTCGACCTCGGCCGCGGCGCGCTCGACGACGAGTTCGGCGTCGACTTCCTCTGACCT 360 consensus_8703#2 ------------------------------------------------------------ consensus_8703#1 ---------------------------------------------------CCGTGAAAA 9 consensus_8703#0 CTCGAGATCGCAAGCGCGTGCAAGTGTAACCGGACAC-GTCACACGGCCACGTATACGCA 419 consensus_8703#2 ----------------------------------------------------TATACGCA 8 consensus_8703#1 NTTGTAACC-CGGGNACAC-CGGTCACCACGGNCCACCGTAATACGGCAATGGGACCCAA 67 * * consensus_8703#0 TGGACCACGCTG-TCTGCCACGGAAGATCGACGGTCA-GAAGAGACGACACGTGTCAGGA 477 consensus_8703#2 TGGACCACGCTG-TCTGCCACGGAAGATCGACGGTCA-GAAGAGACGACACGTGTCAGGA 66 consensus_8703#1 CGGCTTGTCCTGGCCCACCGGGAAAGATCGACGGTCAAGAAGAGACGACACGTGTCAGGA 127 ** *** * ** * ************** ********************** consensus_8703#0 ATCGGAC--GGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCAC 535 consensus_8703#2 ANCGGAC--GGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCAC 124 consensus_8703#1 ATCGGGACGGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCAC 187 * *** *************************************************** consensus_8703#0 ACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGC 595 consensus_8703#2 ACNTTTTTTATTATTATTGGACTAAGTTGNTCAANTAATTAACTCTTTCTTTGGTATAGC 184 consensus_8703#1 ACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGC 247 ** ************************** **** ************************* consensus_8703#0 AGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCA 655 consensus_8703#2 AGTGCGTGTGTGTGCGCATAATAAGGGTTANATATATATATGCTCAAATGTTTTTCGCCA 244 consensus_8703#1 AGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCA 307 ****************************** ***************************** consensus_8703#0 GAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACG---------- 705 consensus_8703#2 GAATAGCNTNATACATATATACATTTGATGAAAAAAAAAAAAAAAAAANANAG------- 297 consensus_8703#1 GAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACNGACTGANATN 367 ******* *********************** * ** *** consensus_8703#0 ---------------------------- consensus_8703#2 ---------------------------- consensus_8703#1 NANAATNATCTCTNANANNANNANNACC 395 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||