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Oryza sativa
cluster # 8704 cluster # 8704       Sequences # 5       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8704#0 length = 965 sequences # 1  
consensus_8704#1 length = 928 sequences # 1  
consensus_8704#2 length = 906 sequences # 1  
consensus_8704#3 length = 898 sequences # 1  
consensus_8704#4 length = 823 sequences # 1  

consensusID : consensus_8704#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 965
fasta sequence
                              [CCAGACCTTCACTTCCAACACTCACTTCAGCACGACAGCTCGCTCGACAATCTTTTTTTTGTCTTTACAATTCTCAAAATGCACGGCAAACTCGCTGCCCTTCTTCTTCCGGTCCTCGCTGCGGCGAACCCAGTGAGACGCGGTGATGCTCCCGACCCAAACCAAATCACCATTGTGGACACAACTTACTCTGGTAACGGATGTCCTCAGGGCTCCGTGTCGACCAGCACCTCGACTGACAAGACTGTCGTAACCTACGGCTTCGACGCCTTCCAGACCTACATTGGTCCCGGAACCACTCCCGCCGACAGGTCCAAGAACTGCCAGCTTCACCTGAACCTCAAGTACCCCGGCGGCTTCCAGTACGCCGTTGTCGACGCCACGTACCACGGCTGGGCTCGTCTGGACGAGGGCGTAACCGGCAGCTTCATCACGACCTACTACTTCAGCCAGGACGCGGGTAAGACGCAGACTACGCGCATGTCGGCGGTTGGCGGCGGGGCCCTCGCAGCCGGTCAGGTCTACACCAAGACGGACAAGGTGGAGACGACGGCTACCATCTGGAGCCCTTGCGGCCAGAACGGCATCTTGAACATCAACAACCGTATTGCCCTTACCAACAAGAAGTCGACTCAGGCGGGTGAGATGAGCAACGACGACGCGCCTGTCGCCTTTACCCAGCAGCTGCACGTTGCGTGGAGGAAGTGCGAGTCTGGAAGTGGAAGCGGTGGTAGCGGAAGTGACACGATTGGCATTGGTAACCCCAACTCTGAGCTTGAGTTTGAGTAGATGGGTTTGGTGGCTGAAGAGGGAATTGCGGAGAGGTTGGGTTGAGTTTGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAAGGTCGGGTCGAGCGGTGAAGATGATGGTCATGGTGACAGCCTGGAACGTGTATATAGTCAAGTTGTCGAGTTGATGTCGCTATGAATTTCATGCAT]

[+] EMBL AK109075             [CCAGACCTTCACTTCCAACACTCACTTCAGCACGACAGCTCGCTCGACAATCTTTTTTTTGTCTTTACAATTCTCAAAATGCACGGCAAACTCGCTGCCCTTCTTCTTCCGGTCCTCGCTGCGGCGAACCCAGTGAGACGCGGTGATGCTCCCGACCCAAACCAAATCACCATTGTGGACACAACTTACTCTGGTAACGGATGTCCTCAGGGCTCCGTGTCGACCAGCACCTCGACTGACAAGACTGTCGTAACCTACGGCTTCGACGCCTTCCAGACCTACATTGGTCCCGGAACCACTCCCGCCGACAGGTCCAAGAACTGCCAGCTTCACCTGAACCTCAAGTACCCCGGCGGCTTCCAGTACGCCGTTGTCGACGCCACGTACCACGGCTGGGCTCGTCTGGACGAGGGCGTAACCGGCAGCTTCATCACGACCTACTACTTCAGCCAGGACGCGGGTAAGACGCAGACTACGCGCATGTCGGCGGTTGGCGGCGGGGCCCTCGCAGCCGGTCAGGTCTACACCAAGACGGACAAGGTGGAGACGACGGCTACCATCTGGAGCCCTTGCGGCCAGAACGGCATCTTGAACATCAACAACCGTATTGCCCTTACCAACAAGAAGTCGACTCAGGCGGGTGAGATGAGCAACGACGACGCGCCTGTCGCCTTTACCCAGCAGCTGCACGTTGCGTGGAGGAAGTGCGAGTCTGGAAGTGGAAGCGGTGGTAGCGGAAGTGACACGATTGGCATTGGTAACCCCAACTCTGAGCTTGAGTTTGAGTAGATGGGTTTGGTGGCTGAAGAGGGAATTGCGGAGAGGTTGGGTTGAGTTTGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAAGGTCGGGTCGAGCGGTGAAGATGATGGTCATGGTGACAGCCTGGAACGTGTATATAGTCAAGTTGTCGAGTTGATGTCGCTATGAATTTCATGCAT]


>consensus_8704#0 CCAGACCTTCACTTCCAACACTCACTTCAGCACGACAGCTCGCTCGACAATCTTTTTTTT GTCTTTACAATTCTCAAAATGCACGGCAAACTCGCTGCCCTTCTTCTTCCGGTCCTCGCT GCGGCGAACCCAGTGAGACGCGGTGATGCTCCCGACCCAAACCAAATCACCATTGTGGAC ACAACTTACTCTGGTAACGGATGTCCTCAGGGCTCCGTGTCGACCAGCACCTCGACTGAC AAGACTGTCGTAACCTACGGCTTCGACGCCTTCCAGACCTACATTGGTCCCGGAACCACT CCCGCCGACAGGTCCAAGAACTGCCAGCTTCACCTGAACCTCAAGTACCCCGGCGGCTTC CAGTACGCCGTTGTCGACGCCACGTACCACGGCTGGGCTCGTCTGGACGAGGGCGTAACC GGCAGCTTCATCACGACCTACTACTTCAGCCAGGACGCGGGTAAGACGCAGACTACGCGC ATGTCGGCGGTTGGCGGCGGGGCCCTCGCAGCCGGTCAGGTCTACACCAAGACGGACAAG GTGGAGACGACGGCTACCATCTGGAGCCCTTGCGGCCAGAACGGCATCTTGAACATCAAC AACCGTATTGCCCTTACCAACAAGAAGTCGACTCAGGCGGGTGAGATGAGCAACGACGAC GCGCCTGTCGCCTTTACCCAGCAGCTGCACGTTGCGTGGAGGAAGTGCGAGTCTGGAAGT GGAAGCGGTGGTAGCGGAAGTGACACGATTGGCATTGGTAACCCCAACTCTGAGCTTGAG TTTGAGTAGATGGGTTTGGTGGCTGAAGAGGGAATTGCGGAGAGGTTGGGTTGAGTTTGG GTAGGGTAGGGTAGGGTAGGGTAGGGTAAGGTCGGGTCGAGCGGTGAAGATGATGGTCAT GGTGACAGCCTGGAACGTGTATATAGTCAAGTTGTCGAGTTGATGTCGCTATGAATTTCA TGCAT



consensusID : consensus_8704#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 928
fasta sequence
                              [CACCACCAGCATTCACTCCCAGCTTCTCACCAATCACCACTCGCTCGGCCTAACACCGCCTTTGCTTTCTAATCTTTAAAAATGCATTCCAAGATCGTTGCTCTTGTCCTCCCGGCCCTCGCCGCGGCCCTACCCCAGTCAGGAAGCGCACCCAGCCCGGAGCAGATCACCATTGAGGGAACCACCTACTCTGGCAATGGCTGCCCCCAGGGCTCAGTCTCTACCTCGACCTCCACAGACAAGACCGTCATTACTTACGGCTTCGATCAATTCCAGACCTACATTGGCCCTGGCATCGCCGCATCTGAGAAGAGCAAGAACTGCCAGCTCCACCTGAACCTCAAGTACCCCGGTGGCTTCCAGTACGCCGTCGTAGACGCCACCTACCACGGCTGGGCACGTCTCGACGATGGTGTGACAGGGAGCTTCATCACGACCTACTACTTCTCCCAGGACGCCGGAAAGACTCAAACCACCCGCTCGTCCTTCACCGGCGGCGGCGCCCTCGCCAACGGCCAGGTATACACCAAGCAGGACTCAGTCGAGACCACCGCCACCATCTGGAGCCCGTGCGGCAGCAACGGCATCCTCAACATCAACAACCGCATCTCGCTTACGTCCAAGAAGTCCACTGCTACTGGTGAATTGTCCAACGATGATGCTACCGTCGCTTTCACCCAGCAGCTTCACGTTGCCTGGAGGAAGTGCACTGGCTCTGGCTCCGGCTCTGGCTCTGGCGGCGACAACACTATTGGCATTGGAACCCCAAGCTCAGATACTACCATTCCTTCCAACTAGAGCGGGGATGTTGAAGGGTCGATGGGGGAGGAGGAGGCGAGTGAGTGAGAAGCTAGGAGTGGGTGCGTTGTAAATAGTGCGGTGTAAATAGTTTTGGTGGGTTTTCGTATGTTGGTGTGAATGGATGCAT]

[+] EMBL AK108837             [CACCACCAGCATTCACTCCCAGCTTCTCACCAATCACCACTCGCTCGGCCTAACACCGCCTTTGCTTTCTAATCTTTAAAAATGCATTCCAAGATCGTTGCTCTTGTCCTCCCGGCCCTCGCCGCGGCCCTACCCCAGTCAGGAAGCGCACCCAGCCCGGAGCAGATCACCATTGAGGGAACCACCTACTCTGGCAATGGCTGCCCCCAGGGCTCAGTCTCTACCTCGACCTCCACAGACAAGACCGTCATTACTTACGGCTTCGATCAATTCCAGACCTACATTGGCCCTGGCATCGCCGCATCTGAGAAGAGCAAGAACTGCCAGCTCCACCTGAACCTCAAGTACCCCGGTGGCTTCCAGTACGCCGTCGTAGACGCCACCTACCACGGCTGGGCACGTCTCGACGATGGTGTGACAGGGAGCTTCATCACGACCTACTACTTCTCCCAGGACGCCGGAAAGACTCAAACCACCCGCTCGTCCTTCACCGGCGGCGGCGCCCTCGCCAACGGCCAGGTATACACCAAGCAGGACTCAGTCGAGACCACCGCCACCATCTGGAGCCCGTGCGGCAGCAACGGCATCCTCAACATCAACAACCGCATCTCGCTTACGTCCAAGAAGTCCACTGCTACTGGTGAATTGTCCAACGATGATGCTACCGTCGCTTTCACCCAGCAGCTTCACGTTGCCTGGAGGAAGTGCACTGGCTCTGGCTCCGGCTCTGGCTCTGGCGGCGACAACACTATTGGCATTGGAACCCCAAGCTCAGATACTACCATTCCTTCCAACTAGAGCGGGGATGTTGAAGGGTCGATGGGGGAGGAGGAGGCGAGTGAGTGAGAAGCTAGGAGTGGGTGCGTTGTAAATAGTGCGGTGTAAATAGTTTTGGTGGGTTTTCGTATGTTGGTGTGAATGGATGCAT]


>consensus_8704#1 CACCACCAGCATTCACTCCCAGCTTCTCACCAATCACCACTCGCTCGGCCTAACACCGCC TTTGCTTTCTAATCTTTAAAAATGCATTCCAAGATCGTTGCTCTTGTCCTCCCGGCCCTC GCCGCGGCCCTACCCCAGTCAGGAAGCGCACCCAGCCCGGAGCAGATCACCATTGAGGGA ACCACCTACTCTGGCAATGGCTGCCCCCAGGGCTCAGTCTCTACCTCGACCTCCACAGAC AAGACCGTCATTACTTACGGCTTCGATCAATTCCAGACCTACATTGGCCCTGGCATCGCC GCATCTGAGAAGAGCAAGAACTGCCAGCTCCACCTGAACCTCAAGTACCCCGGTGGCTTC CAGTACGCCGTCGTAGACGCCACCTACCACGGCTGGGCACGTCTCGACGATGGTGTGACA GGGAGCTTCATCACGACCTACTACTTCTCCCAGGACGCCGGAAAGACTCAAACCACCCGC TCGTCCTTCACCGGCGGCGGCGCCCTCGCCAACGGCCAGGTATACACCAAGCAGGACTCA GTCGAGACCACCGCCACCATCTGGAGCCCGTGCGGCAGCAACGGCATCCTCAACATCAAC AACCGCATCTCGCTTACGTCCAAGAAGTCCACTGCTACTGGTGAATTGTCCAACGATGAT GCTACCGTCGCTTTCACCCAGCAGCTTCACGTTGCCTGGAGGAAGTGCACTGGCTCTGGC TCCGGCTCTGGCTCTGGCGGCGACAACACTATTGGCATTGGAACCCCAAGCTCAGATACT ACCATTCCTTCCAACTAGAGCGGGGATGTTGAAGGGTCGATGGGGGAGGAGGAGGCGAGT GAGTGAGAAGCTAGGAGTGGGTGCGTTGTAAATAGTGCGGTGTAAATAGTTTTGGTGGGT TTTCGTATGTTGGTGTGAATGGATGCAT



consensusID : consensus_8704#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 906
fasta sequence
                              [CAACACAAGCATTCACTTCCAATCACCACTCACTCGGTCTTCTACAACCACTCTCACTCAAACACAATCAGTCTTTCAAGATGCACTCCAAGTTCGCTGCTCTACTCCTCCCAGCTCTTGCTGCGGCCTACCCCCAGTCTGGCAGTGCCCCCAACCCAGACGACATCACCATCACTAGCACCACTTACTCTGGTAACGGATGTCCCCAGGGCTCCGTCTCTACCTCCAGCTCCGACGACAAGACTGTCATTACTTATGGCTTCGATCAATTCCAGACGTACATTGGCCCCGGCGTCGCCTCGTCCGAGAAGTCCAAGAACTGCCAGCTCCACTTGAACCTCAAGTACCCCGGCGGCTTCCAGTACGCCGTTGTCGACGCCACCTACCACGGCTGGGCTCGTCTGGACGATGGTGTGACCGGGAGCTTCATCACGACCTACTACTTCTCCCAGGACGCCGGCAAGACCCAAACCACCCGCTCCTCCTTCACCGGCGGCGGCGCCCTCAAGGACGGCCAGGTCTACACCAAGCAGGACAGCGTCGAGACCACCGCCACCATCTGGTCCCCCTGCGGCAGCAACGGCATCCTCAACATCAACAACCGCATCTCGCTCACGTCCAAGGACTCAAAGGCGAGCGGTGAGCTCTCCAACGACGATGCGACCGTCGCCTTCACCCAGCAGCTCCACGTTGCGTGGAAGAAGTGCACGCCTGGATCGGGTAGCGGATCTGGCAGCGACAACACGATTGGCATTGGCATGCCTAGCTCGGATGTCATAATCAACTAGAGTGTGAGGAAGGAGTGAGTGAGTGGTTGGAAGCAGACGGGATGCGGAAAAGGTGTATATAGGTGATGAGAAAGGGTTTCTTTTGTTTGAGGTAGTTTGGACTTGTGAATTCATTCAT]

[+] EMBL AK108958             [CAACACAAGCATTCACTTCCAATCACCACTCACTCGGTCTTCTACAACCACTCTCACTCAAACACAATCAGTCTTTCAAGATGCACTCCAAGTTCGCTGCTCTACTCCTCCCAGCTCTTGCTGCGGCCTACCCCCAGTCTGGCAGTGCCCCCAACCCAGACGACATCACCATCACTAGCACCACTTACTCTGGTAACGGATGTCCCCAGGGCTCCGTCTCTACCTCCAGCTCCGACGACAAGACTGTCATTACTTATGGCTTCGATCAATTCCAGACGTACATTGGCCCCGGCGTCGCCTCGTCCGAGAAGTCCAAGAACTGCCAGCTCCACTTGAACCTCAAGTACCCCGGCGGCTTCCAGTACGCCGTTGTCGACGCCACCTACCACGGCTGGGCTCGTCTGGACGATGGTGTGACCGGGAGCTTCATCACGACCTACTACTTCTCCCAGGACGCCGGCAAGACCCAAACCACCCGCTCCTCCTTCACCGGCGGCGGCGCCCTCAAGGACGGCCAGGTCTACACCAAGCAGGACAGCGTCGAGACCACCGCCACCATCTGGTCCCCCTGCGGCAGCAACGGCATCCTCAACATCAACAACCGCATCTCGCTCACGTCCAAGGACTCAAAGGCGAGCGGTGAGCTCTCCAACGACGATGCGACCGTCGCCTTCACCCAGCAGCTCCACGTTGCGTGGAAGAAGTGCACGCCTGGATCGGGTAGCGGATCTGGCAGCGACAACACGATTGGCATTGGCATGCCTAGCTCGGATGTCATAATCAACTAGAGTGTGAGGAAGGAGTGAGTGAGTGGTTGGAAGCAGACGGGATGCGGAAAAGGTGTATATAGGTGATGAGAAAGGGTTTCTTTTGTTTGAGGTAGTTTGGACTTGTGAATTCATTCAT]


>consensus_8704#2 CAACACAAGCATTCACTTCCAATCACCACTCACTCGGTCTTCTACAACCACTCTCACTCA AACACAATCAGTCTTTCAAGATGCACTCCAAGTTCGCTGCTCTACTCCTCCCAGCTCTTG CTGCGGCCTACCCCCAGTCTGGCAGTGCCCCCAACCCAGACGACATCACCATCACTAGCA CCACTTACTCTGGTAACGGATGTCCCCAGGGCTCCGTCTCTACCTCCAGCTCCGACGACA AGACTGTCATTACTTATGGCTTCGATCAATTCCAGACGTACATTGGCCCCGGCGTCGCCT CGTCCGAGAAGTCCAAGAACTGCCAGCTCCACTTGAACCTCAAGTACCCCGGCGGCTTCC AGTACGCCGTTGTCGACGCCACCTACCACGGCTGGGCTCGTCTGGACGATGGTGTGACCG GGAGCTTCATCACGACCTACTACTTCTCCCAGGACGCCGGCAAGACCCAAACCACCCGCT CCTCCTTCACCGGCGGCGGCGCCCTCAAGGACGGCCAGGTCTACACCAAGCAGGACAGCG TCGAGACCACCGCCACCATCTGGTCCCCCTGCGGCAGCAACGGCATCCTCAACATCAACA ACCGCATCTCGCTCACGTCCAAGGACTCAAAGGCGAGCGGTGAGCTCTCCAACGACGATG CGACCGTCGCCTTCACCCAGCAGCTCCACGTTGCGTGGAAGAAGTGCACGCCTGGATCGG GTAGCGGATCTGGCAGCGACAACACGATTGGCATTGGCATGCCTAGCTCGGATGTCATAA TCAACTAGAGTGTGAGGAAGGAGTGAGTGAGTGGTTGGAAGCAGACGGGATGCGGAAAAG GTGTATATAGGTGATGAGAAAGGGTTTCTTTTGTTTGAGGTAGTTTGGACTTGTGAATTC ATTCAT



consensusID : consensus_8704#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 898
fasta sequence
                              [CAACACAAGCATTCACTTCCAATCACCACTCACTCGGTCTTCTAATACCACTCTCACTCAACCAATCAATCTTTCAAGATGCATTCCAAGTTCATCGCTCTTGCGCTCCCAGCCCTTGCTGCTGCCTACCCCCAGTCTGGCAGCTCGCCCAACCCTGATGACATCCAGATTGTCAGCACCACCTACTCTGGCAACGGTTGCCCTCAGGGCTCCGTCTCTACCTCCAGCTCCGAGGACAAGACTGTCATTACTTATGGCTTCGATCAATTCCAGACGTACATTGGCCCCAACATCGCCTCGTCCGAGAAGTCCAAGAACTGCCAGCTTCACTTGAACCTCAAGTACCCCGGCGGCTTCCAGTACGCCGTCGTCGACGCCACCTATCACGGCTGGGCGCGCATGGACGCTGGTGTTACCGGCAGCTTCATCACCACCTACTACTTCTCCCAGGATGCCGGCAAGACGCAAACCACCCGCTCCAGCTTCACCGGCGGCGGCAAGCTCATCGACGGCCAAGTCTACACCAAGCAGGACAGCGTCGAGACCACCGCCACCATCTGGTCGCCCTGCGGCAGCAACGGCATCCTCAACATCAACAACCGCATCTCGCTCACCAGCAAGGACGCCAAGGCGTACGGTGAGCTCTCCAACGACGATGCGACCGTCGCCTTCAACCAGCAGCTCCACGTTGCCTGGAAGAAGTGCACACCCGGATCTGGAAGCGGCAGCGGATCAGACGACACCATTGGCATTGGAATGCCTTCTTCGGATGTCATCATCAACTAGAGTGTGGAAGATGAGCGAGTGGCTGAGAAGAGGTGGATGGGGGAGAGATGTATATAGGTGACGAGAAAGGAGTTTCTTTTGTGTGTAGTTTGGATTTTGAATTCATTTATTG]

[+] EMBL AK108817             [CAACACAAGCATTCACTTCCAATCACCACTCACTCGGTCTTCTAATACCACTCTCACTCAACCAATCAATCTTTCAAGATGCATTCCAAGTTCATCGCTCTTGCGCTCCCAGCCCTTGCTGCTGCCTACCCCCAGTCTGGCAGCTCGCCCAACCCTGATGACATCCAGATTGTCAGCACCACCTACTCTGGCAACGGTTGCCCTCAGGGCTCCGTCTCTACCTCCAGCTCCGAGGACAAGACTGTCATTACTTATGGCTTCGATCAATTCCAGACGTACATTGGCCCCAACATCGCCTCGTCCGAGAAGTCCAAGAACTGCCAGCTTCACTTGAACCTCAAGTACCCCGGCGGCTTCCAGTACGCCGTCGTCGACGCCACCTATCACGGCTGGGCGCGCATGGACGCTGGTGTTACCGGCAGCTTCATCACCACCTACTACTTCTCCCAGGATGCCGGCAAGACGCAAACCACCCGCTCCAGCTTCACCGGCGGCGGCAAGCTCATCGACGGCCAAGTCTACACCAAGCAGGACAGCGTCGAGACCACCGCCACCATCTGGTCGCCCTGCGGCAGCAACGGCATCCTCAACATCAACAACCGCATCTCGCTCACCAGCAAGGACGCCAAGGCGTACGGTGAGCTCTCCAACGACGATGCGACCGTCGCCTTCAACCAGCAGCTCCACGTTGCCTGGAAGAAGTGCACACCCGGATCTGGAAGCGGCAGCGGATCAGACGACACCATTGGCATTGGAATGCCTTCTTCGGATGTCATCATCAACTAGAGTGTGGAAGATGAGCGAGTGGCTGAGAAGAGGTGGATGGGGGAGAGATGTATATAGGTGACGAGAAAGGAGTTTCTTTTGTGTGTAGTTTGGATTTTGAATTCATTTATTG]


>consensus_8704#3 CAACACAAGCATTCACTTCCAATCACCACTCACTCGGTCTTCTAATACCACTCTCACTCA ACCAATCAATCTTTCAAGATGCATTCCAAGTTCATCGCTCTTGCGCTCCCAGCCCTTGCT GCTGCCTACCCCCAGTCTGGCAGCTCGCCCAACCCTGATGACATCCAGATTGTCAGCACC ACCTACTCTGGCAACGGTTGCCCTCAGGGCTCCGTCTCTACCTCCAGCTCCGAGGACAAG ACTGTCATTACTTATGGCTTCGATCAATTCCAGACGTACATTGGCCCCAACATCGCCTCG TCCGAGAAGTCCAAGAACTGCCAGCTTCACTTGAACCTCAAGTACCCCGGCGGCTTCCAG TACGCCGTCGTCGACGCCACCTATCACGGCTGGGCGCGCATGGACGCTGGTGTTACCGGC AGCTTCATCACCACCTACTACTTCTCCCAGGATGCCGGCAAGACGCAAACCACCCGCTCC AGCTTCACCGGCGGCGGCAAGCTCATCGACGGCCAAGTCTACACCAAGCAGGACAGCGTC GAGACCACCGCCACCATCTGGTCGCCCTGCGGCAGCAACGGCATCCTCAACATCAACAAC CGCATCTCGCTCACCAGCAAGGACGCCAAGGCGTACGGTGAGCTCTCCAACGACGATGCG ACCGTCGCCTTCAACCAGCAGCTCCACGTTGCCTGGAAGAAGTGCACACCCGGATCTGGA AGCGGCAGCGGATCAGACGACACCATTGGCATTGGAATGCCTTCTTCGGATGTCATCATC AACTAGAGTGTGGAAGATGAGCGAGTGGCTGAGAAGAGGTGGATGGGGGAGAGATGTATA TAGGTGACGAGAAAGGAGTTTCTTTTGTGTGTAGTTTGGATTTTGAATTCATTTATTG



consensusID : consensus_8704#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 823
fasta sequence
                              [CGTCAGTGTCCAATTACCTCTCCAGGCTCGAACCCAAACACGTACCCCACGGTATCTGTCTCAAACGCAATCAACATGCATTCCAAGATCGCTGCCTTCCTCCTCCCGCTCTTCGCGGTCGCCAACCCCGTCCCTGCTGGTGGCAACGCAGCTGCTCCCGATCCATCCCAGATCACCATCATCGACTCTTCCTACTCTGGTAACGGCTGCCCTCAGGGATCCGTCTCCACCTCGACCTCCCCGGACAAGACTGTCATCACCTACGGCTTCGACCAGTTCCAAACCTACATCGGCCCCGGCATCTCCACCAAGGACAACTCCCGCGCCTGCCAGCTCCACCTGAACCTCAAGTACCCGGGCGGCTTCCAGTACGCCGTCGTGTCCGCCACGTACCACGGGTGGGCGCGCATGGACAAGGGCGTGACGGGCGACTTCGTCACGAGCTACTACTTCTCGCAGGACGCCGGCAAGACGTCCACCACGCGCATGAGCGCCACGGGCGGCGGCGACCTCATCAACGGCCAGGTGTACACCAAGCAGGACAACGTCGAGACCACGGCCGTCGTCTGGTCGCCCTGCGGCACCACGGGCATCCTCAACGTCAACAACCGCATCAGCTTGCGCTCTACCAACTCGTCGGCTTTCGGCGAGCTCTCCAACGACGATGCTACCGTCGCGTTCACACAGCAGGTGCACGTCTCGTGGCAGCCTTGCACGCCCAAGGGTGGCTCTGGTACCTCGCCCGGCGACACCATTGGCATTGGAAACCAGCCTGGTGCCGGTATCGACTTTGAGTAGGTGGACGATTTGAGAGGGGACGAGT]

[+] EMBL AK110570             [CGTCAGTGTCCAATTACCTCTCCAGGCTCGAACCCAAACACGTACCCCACGGTATCTGTCTCAAACGCAATCAACATGCATTCCAAGATCGCTGCCTTCCTCCTCCCGCTCTTCGCGGTCGCCAACCCCGTCCCTGCTGGTGGCAACGCAGCTGCTCCCGATCCATCCCAGATCACCATCATCGACTCTTCCTACTCTGGTAACGGCTGCCCTCAGGGATCCGTCTCCACCTCGACCTCCCCGGACAAGACTGTCATCACCTACGGCTTCGACCAGTTCCAAACCTACATCGGCCCCGGCATCTCCACCAAGGACAACTCCCGCGCCTGCCAGCTCCACCTGAACCTCAAGTACCCGGGCGGCTTCCAGTACGCCGTCGTGTCCGCCACGTACCACGGGTGGGCGCGCATGGACAAGGGCGTGACGGGCGACTTCGTCACGAGCTACTACTTCTCGCAGGACGCCGGCAAGACGTCCACCACGCGCATGAGCGCCACGGGCGGCGGCGACCTCATCAACGGCCAGGTGTACACCAAGCAGGACAACGTCGAGACCACGGCCGTCGTCTGGTCGCCCTGCGGCACCACGGGCATCCTCAACGTCAACAACCGCATCAGCTTGCGCTCTACCAACTCGTCGGCTTTCGGCGAGCTCTCCAACGACGATGCTACCGTCGCGTTCACACAGCAGGTGCACGTCTCGTGGCAGCCTTGCACGCCCAAGGGTGGCTCTGGTACCTCGCCCGGCGACACCATTGGCATTGGAAACCAGCCTGGTGCCGGTATCGACTTTGAGTAGGTGGACGATTTGAGAGGGGACGAGT]


>consensus_8704#4 CGTCAGTGTCCAATTACCTCTCCAGGCTCGAACCCAAACACGTACCCCACGGTATCTGTC TCAAACGCAATCAACATGCATTCCAAGATCGCTGCCTTCCTCCTCCCGCTCTTCGCGGTC GCCAACCCCGTCCCTGCTGGTGGCAACGCAGCTGCTCCCGATCCATCCCAGATCACCATC ATCGACTCTTCCTACTCTGGTAACGGCTGCCCTCAGGGATCCGTCTCCACCTCGACCTCC CCGGACAAGACTGTCATCACCTACGGCTTCGACCAGTTCCAAACCTACATCGGCCCCGGC ATCTCCACCAAGGACAACTCCCGCGCCTGCCAGCTCCACCTGAACCTCAAGTACCCGGGC GGCTTCCAGTACGCCGTCGTGTCCGCCACGTACCACGGGTGGGCGCGCATGGACAAGGGC GTGACGGGCGACTTCGTCACGAGCTACTACTTCTCGCAGGACGCCGGCAAGACGTCCACC ACGCGCATGAGCGCCACGGGCGGCGGCGACCTCATCAACGGCCAGGTGTACACCAAGCAG GACAACGTCGAGACCACGGCCGTCGTCTGGTCGCCCTGCGGCACCACGGGCATCCTCAAC GTCAACAACCGCATCAGCTTGCGCTCTACCAACTCGTCGGCTTTCGGCGAGCTCTCCAAC GACGATGCTACCGTCGCGTTCACACAGCAGGTGCACGTCTCGTGGCAGCCTTGCACGCCC AAGGGTGGCTCTGGTACCTCGCCCGGCGACACCATTGGCATTGGAAACCAGCCTGGTGCC GGTATCGACTTTGAGTAGGTGGACGATTTGAGAGGGGACGAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8704#2      CAACACAAGCATTCACTTCCAA----TCACCACTCAC---TCGGTCT-TCTACAACCACT 52
consensus_8704#3      CAACACAAGCATTCACTTCCAA----TCACCACTCAC---TCGGTCT-TCTAATACCACT 52
consensus_8704#1      CACCACCAGCATTCACTCCCAGCTTCTCACCAATCACCACTCGCTCGGCCTAACACCGCC 60
consensus_8704#4      ---------CGTCAGTGTCCAA----TTACCTCTCCAGGCTCGAACC--CAAACACGTAC 45
consensus_8704#0      ----CCAGACCTTCACTTCCAACA-CTCACTTCAGCACGACAGCTCGCTCGACAATCTTT 55
                               * *      ***     * **            *  *   * *  *     

consensus_8704#2      CTCACTCAAACACAATCAGTCTT--TCAAGATGCACTCCAAGTTCGCTGCTCTACTCCTC 110
consensus_8704#3      CTCACTCAACCA--ATCAATCTT--TCAAGATGCATTCCAAGTTCATCGCTCTTGCGCTC 108
consensus_8704#1      TTTGCTTT-------CTAATCTT--TAAAAATGCATTCCAAGATCGTTGCTCTTGTCCTC 111
consensus_8704#4      CCCACGGTATCTGTCTCAAACGCAATCAACATGCATTCCAAGATCGCTGCCTTCCTCCTC 105
consensus_8704#0      TTTTTGTCTTTA----CAATTCT---CAAAATGCACGGCAAACTCGCTGCCCTTCTTCTT 108
                                       *         ** *****   ***  **   **  *    ** 

consensus_8704#2      CCAGCTCTTGCTGCGGCCTACCCCCAGTCTG-----------GCAGT-GCCCCCAACCCA 158
consensus_8704#3      CCAGCCCTTGCTGCTGCCTACCCCCAGTCTG-----------GCAGC-TCGCCCAACCCT 156
consensus_8704#1      CCGGCCCTCGCCGCGGCCCTACCCCAGTCAG-----------GAAGC-GCACCCAGCCCG 159
consensus_8704#4      CCGCTCTTCGCGGTCGCCAACCCCGTCCCTGCTGGTGGCAACGCAGCTGCTCCCGATCCA 165
consensus_8704#0      CCGGTCCTCGCTGCGGCGAA--CCCAGTGAGACG-------CGGTGATGCTCCCGACCCA 159
                      **     * ** *  **     **      *           *  *   * ***   ** 

consensus_8704#2      GACGACATCACCATCACTAGCACCACTTACTCTGGTAACGGATGTCCCCAGGGCTCCGTC 218
consensus_8704#3      GATGACATCCAGATTGTCAGCACCACCTACTCTGGCAACGGTTGCCCTCAGGGCTCCGTC 216
consensus_8704#1      GAGCAGATCACCATTGAGGGAACCACCTACTCTGGCAATGGCTGCCCCCAGGGCTCAGTC 219
consensus_8704#4      TCCCAGATCACCATCATCGACTCTTCCTACTCTGGTAACGGCTGCCCTCAGGGATCCGTC 225
consensus_8704#0      AACCAAATCACCATTGTGGACACAACTTACTCTGGTAACGGATGTCCTCAGGGCTCCGTG 219
                          * ***   **        *  * ******** ** ** ** ** ***** ** ** 

consensus_8704#2      TCTACCTCCAGCTCCGACGACAAGACTGTCATTACTTATGGCTTCGATCAATTCCAGACG 278
consensus_8704#3      TCTACCTCCAGCTCCGAGGACAAGACTGTCATTACTTATGGCTTCGATCAATTCCAGACG 276
consensus_8704#1      TCTACCTCGACCTCCACAGACAAGACCGTCATTACTTACGGCTTCGATCAATTCCAGACC 279
consensus_8704#4      TCCACCTCGACCTCCCCGGACAAGACTGTCATCACCTACGGCTTCGACCAGTTCCAAACC 285
consensus_8704#0      TCGACCAGCACCTCGACTGACAAGACTGTCGTAACCTACGGCTTCGACGCCTTCCAGACC 279
                      ** ***   * ***    ******** *** * ** ** ********    ***** ** 

consensus_8704#2      TACATTGGCCCCGGCGTCGCCTCGTCCGAGAAGTCCAAGAACTGCCAGCTCCACTTGAAC 338
consensus_8704#3      TACATTGGCCCCAACATCGCCTCGTCCGAGAAGTCCAAGAACTGCCAGCTTCACTTGAAC 336
consensus_8704#1      TACATTGGCCCTGGCATCGCCGCATCTGAGAAGAGCAAGAACTGCCAGCTCCACCTGAAC 339
consensus_8704#4      TACATCGGCCCCGGCATCTCCACCAAGGACAACTCCCGCGCCTGCCAGCTCCACCTGAAC 345
consensus_8704#0      TACATTGGTCCCGGAACCACTCCCGCCGACAGGTCCAAGAACTGCCAGCTTCACCTGAAC 339
                      ***** ** **      * *  *    ** *    *     ********* *** *****

consensus_8704#2      CTCAAGTACCCCGGCGGCTTCCAGTACGCCGTTGTCGACGCCACCTACCACGGCTGGGCT 398
consensus_8704#3      CTCAAGTACCCCGGCGGCTTCCAGTACGCCGTCGTCGACGCCACCTATCACGGCTGGGCG 396
consensus_8704#1      CTCAAGTACCCCGGTGGCTTCCAGTACGCCGTCGTAGACGCCACCTACCACGGCTGGGCA 399
consensus_8704#4      CTCAAGTACCCGGGCGGCTTCCAGTACGCCGTCGTGTCCGCCACGTACCACGGGTGGGCG 405
consensus_8704#0      CTCAAGTACCCCGGCGGCTTCCAGTACGCCGTTGTCGACGCCACGTACCACGGCTGGGCT 399
                      *********** ** ***************** **   ****** ** ***** ***** 

consensus_8704#2      CGTCTGGACGATGGTGTGACCGGGAGCTTCATCACGACCTACTACTTCTCCCAGGACGCC 458
consensus_8704#3      CGCATGGACGCTGGTGTTACCGGCAGCTTCATCACCACCTACTACTTCTCCCAGGATGCC 456
consensus_8704#1      CGTCTCGACGATGGTGTGACAGGGAGCTTCATCACGACCTACTACTTCTCCCAGGACGCC 459
consensus_8704#4      CGCATGGACAAGGGCGTGACGGGCGACTTCGTCACGAGCTACTACTTCTCGCAGGACGCC 465
consensus_8704#0      CGTCTGGACGAGGGCGTAACCGGCAGCTTCATCACGACCTACTACTTCAGCCAGGACGCG 459
                      **  * ***   ** ** ** **   **** **** * **********   ***** ** 

consensus_8704#2      GGCAAGACCCAAACCACCCGCTCCTCCTTCACCGGCGGCGGCGCCCTCAAGGACGGCCAG 518
consensus_8704#3      GGCAAGACGCAAACCACCCGCTCCAGCTTCACCGGCGGCGGCAAGCTCATCGACGGCCAA 516
consensus_8704#1      GGAAAGACTCAAACCACCCGCTCGTCCTTCACCGGCGGCGGCGCCCTCGCCAACGGCCAG 519
consensus_8704#4      GGCAAGACGTCCACCACGCGCATGAGCGCCACGGGCGGCGGCGACCTCATCAACGGCCAG 525
consensus_8704#0      GGTAAGACGCAGACTACGCGCATGTCGGCGGTTGGCGGCGGGGCCCTCGCAGCCGGTCAG 519
                      ** *****    ** ** ***            ********    ***     *** ** 

consensus_8704#2      GTCTACACCAAGCAGGACAGCGTCGAGACCACCGCCACCATCTGGTCCCCCTGCGGCAGC 578
consensus_8704#3      GTCTACACCAAGCAGGACAGCGTCGAGACCACCGCCACCATCTGGTCGCCCTGCGGCAGC 576
consensus_8704#1      GTATACACCAAGCAGGACTCAGTCGAGACCACCGCCACCATCTGGAGCCCGTGCGGCAGC 579
consensus_8704#4      GTGTACACCAAGCAGGACAACGTCGAGACCACGGCCGTCGTCTGGTCGCCCTGCGGCACC 585
consensus_8704#0      GTCTACACCAAGACGGACAAGGTGGAGACGACGGCTACCATCTGGAGCCCTTGCGGCCAG 579
                      ** *********  ****   ** ***** ** **   * *****   ** ******   

consensus_8704#2      AACGGCATCCTCAACATCAACAACCGCATCTCGCTCACG-TCCAAGGACTCAAAGGCGAG 637
consensus_8704#3      AACGGCATCCTCAACATCAACAACCGCATCTCGCTCACC-AGCAAGGACGCCAAGGCGTA 635
consensus_8704#1      AACGGCATCCTCAACATCAACAACCGCATCTCGCTTACG-TCCAAGAAGTCCACTGCTAC 638
consensus_8704#4      ACGGGCATCCTCAACGTCAACAACCGCATCA-GCTTGCGCTCTACCAACTCGTCGGCTTT 644
consensus_8704#0      AACGGCATCTTGAACATCAACAACCGTATTGCCCTTACC-AACAAGAAGTCGACTCAGGC 638
                      *  ****** * *** ********** **    **  *     *   *  *         

consensus_8704#2      CGGTGAGCTCTCCAACGACGATGCGACCGTCGCCTTCACCCAGCAGCTCCACGTTGCGTG 697
consensus_8704#3      CGGTGAGCTCTCCAACGACGATGCGACCGTCGCCTTCAACCAGCAGCTCCACGTTGCCTG 695
consensus_8704#1      TGGTGAATTGTCCAACGATGATGCTACCGTCGCTTTCACCCAGCAGCTTCACGTTGCCTG 698
consensus_8704#4      CGGCGAGCTCTCCAACGACGATGCTACCGTCGCGTTCACACAGCAGGTGCACGTCTCGTG 704
consensus_8704#0      GGGTGAGATGAGCAACGACGACGCGCCTGTCGCCTTTACCCAGCAGCTGCACGTTGCGTG 698
                       ** **  *   ****** ** **  * ***** ** *  ****** * *****  * **

consensus_8704#2      GAAGAAGTGCACG---CCTGGATCGGGTAGCGGATCTGGCAGCGACAACACGATTGGCAT 754
consensus_8704#3      GAAGAAGTGCACA---CCCGGATCTGGAAGCGGCAGCGGATCAGACGACACCATTGGCAT 752
consensus_8704#1      GAGGAAGTGCACTGGCTCTGGCTCCGGCTCTGGCTCTGGCGGCGACAACACTATTGGCAT 758
consensus_8704#4      GCAGCCTTGCACG---CCCAAGGGTGGCTCTGGTACCTCGCCCGGCGACACCATTGGCAT 761
consensus_8704#0      GAGGAAGTGCGAG---TCTGGAAGTGGAAGCGGTGGTAGCGGAAGTGACACGATTGGCAT 755
                      *  *   ***       *       **    **              **** ********

consensus_8704#2      TGGCATGCCTAGCTCGGATGTCATAAT------CAACTAGAGTG-------TGAGGAAGG 801
consensus_8704#3      TGGAATGCCTTCTTCGGATGTCATCAT------CAACTAGAGTG-------TGGAAGA-- 797
consensus_8704#1      TGGAACCCCAAGCTCAGATACTACCATTCCTTCCAACTAGAGCGGGGATGTTGAAGGGTC 818
consensus_8704#4      TGGAA-ACCAGCCT--GGTGCCGGTAT-----CGACTTTGAGTAGG-----TGGACGATT 808
consensus_8704#0      TGGTAACCCCAACTCTGAGCTTGAGTTTGA--GTAGATGGGTTTGGTG-GCTGAAGAGGG 812
                      *** *  **    *  *         *       *  * *           **       

consensus_8704#2      AGTGAGTGAGTGGTTGG-AAGCAGACGGG-ATGC--GGAAAAGGTGTAT-ATAGGTGATG 856
consensus_8704#3      --TGAGCGAGTGGCTGA-GAAGAGGTGG--ATGG--GGGAGAGATGTAT-ATAGGTGACG 849
consensus_8704#1      GATGGGGGAGGAGGAGGCGAGTGAGTGAG-AAGCTAGGAGTGGGTGCGTTGTAAATAGTG 877
consensus_8704#4      TGAGAGGGGACGAGT--------------------------------------------- 823
consensus_8704#0      AATTGCGGAGAGGTTGGGTTGAGTTTGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAAGGT 872
                             *                                                    

consensus_8704#2      AGAAAGG-GTTTCTTTTGTTTGAGGTAGTTTGGACTTGTG-AATTCATTCAT-------- 906
consensus_8704#3      AGAAAGGAGTTTCTTTTGTGTG---TAGTTTGGATTT-TG-AATTCATTTATTG------ 898
consensus_8704#1      CGGTGTAAATAGTTTTGGTGGGTTTTCGTATGTTGGTGTG-AATGGATGCAT-------- 928
consensus_8704#4      ------------------------------------------------------------
consensus_8704#0      CGGGTCGAGCGGTGAAGATGATGGTCATGGTGACAGCCTGGAACGTGTATATAGTCAAGT 932
                                                                                  

consensus_8704#2      ---------------------------------
consensus_8704#3      ---------------------------------
consensus_8704#1      ---------------------------------
consensus_8704#4      ---------------------------------
consensus_8704#0      TGTCGAGTTGATGTCGCTATGAATTTCATGCAT 965
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)