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Oryza sativa
cluster # 8710 cluster # 8710       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8710#0 length = 1082 sequences # 4  
consensus_8710#1 length = 302 sequences # 1  

consensusID : consensus_8710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1082
fasta sequence
                              [CGATACGGAGCGGAAGCAACGCTTGTGTTGTCGCGAGTCTCGTGACCTAGCCTAAGCGCCGCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTCCCCCTCCACGCGCTCGCCACCACCGCCGCTCCCCGAGTCCCGTGCGCGCCGCTGTCGACACCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCTAGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTGACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAGATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCA-AGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGAGTGATGCACT-TTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAACAACAATATGATGATCATGGCAGAATGAAGCAATGAAGAAAAATTCATGTGATGGCTATAT-GTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTCGGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTTTATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACTGCTAGCTACTATCATAAACATGAATGTCACAAAATCTGGTACTGTTGTATAAATTGCGTTCAACAGCTTGGTTGTCACAAAATGACTTCTAAAACAGAGAAATAGAGGATTTAATTTGTGTT]

[+] EMBL AK107492             [CGATACGGAGCGGAAGCAACGCTTGTGTTGTCGCGAGTCTCGTGACCTAGCCTAAGCGCCGCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTCCCCCTCCACGCGCTCGCCACCACCGCCGCTCCCCGAGTCCCGTGCGCGCCGCTGTCGACACCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCTAGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTGACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAGATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCA AGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGAGTGATGCACT TTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAACAACAATATGATGATCATGGCAGAATGAAGCAATGAAGAAAAATTCATGTGATGGCTATAT GTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTCGGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTTTATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACTGCTAGCTACTATCATAAACATGAATGTCACAAAATCTGGTACTGTTGTATAAATTGCGTTCAACAGCTTGGTTGTCACAAAATGACTTCTAAAACAGAGAAATAGAGGATTTAATTTGTGTT]
[+] EMBL AK102896             [                                  GAGTCTCGTGACCTAGCCTAAGCGCCGCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTCCCCCTCCACGCGCTCGCCACCACCGCCGCTCCCCGAGTCCCGTGCGCGCCGCTGTCGACACCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCTAGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTGACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAGATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCA AGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGAGTGATGCACT TTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAACAACAATATGATGATCATGGCAGAATGAAGCAATGAAGAAAAATTCATGTGATGGCTATAT GTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTCGGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTTTATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACTGCTAGCTACTATCATAAACATGAATGTCACAAAATCTG                                                                                    ]
[+] EMBL AU182725             [                                        CGTGACCTAGCCTAAGCGCCGCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTCCCCCTCCACGCGCTCGCCACCACCGCCGNTCCCCGAGTCCCGTGCGCGCCGNTGTCGACACCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCTAGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTGACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAGATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BI805195             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTGGATCCACAGGTCGAAATCCAAAGGGGGTTTCCAAAAT GATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGAGTGATGCACTGTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAACAAC ATATGATGATCATGGCAGAATGAAGC ATGAAGAAAAATTCATGTGATGGCTATATGGTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTCGGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTTTATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACTGCTAGCTACTATCATAAACATGAATGTCACAAAATCTGGTACTGTTGTATAAATTGCGTTCAACAGCTTGGTTGTCACAAAAa                                       ]


>consensus_8710#0 CGATACGGAGCGGAAGCAACGCTTGTGTTGTCGCGAGTCTCGTGACCTAGCCTAAGCGCC GCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTC CCCCTCCACGCGCTCGCCACCACCGCCGCTCCCCGAGTCCCGTGCGCGCCGCTGTCGACA CCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCT AGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTG ACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAG ATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTT CGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAG GCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTT GGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAG CGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATG AGTGATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAA CAACAATATGATGATCATGGCAGAATGAAGCAATGAAGAAAAATTCATGTGATGGCTATA TGTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTC GGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTT TATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACT GCTAGCTACTATCATAAACATGAATGTCACAAAATCTGGTACTGTTGTATAAATTGCGTT CAACAGCTTGGTTGTCACAAAATGACTTCTAAAACAGAGAAATAGAGGATTTAATTTGTG TT



consensusID : consensus_8710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence
                              [AGTTTTCTGTTGAATTTCTGTTAGTTTTCTGTTGNNNTTCTAATATTGCAGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGNACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGNGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGNGTCATGAGTCATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATG]

[+] EMBL OSR0297A             [AGTTTTCTGTTGAATTTCTGTTAGTTTTCTGTTGNNNTTCTAATATTGCAGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGNACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGNGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGNGTCATGAGTCATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATG]


>consensus_8710#1 AGTTTTCTGTTGAATTTCTGTTAGTTTTCTGTTGNNNTTCTAATATTGCAGTGTTACGGA GCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGNACAAAAGGATTTGAAGGTA TTGTTTGAGCTTTCTTTGGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATAC CGTCAAGTTCTAGAGAGCGTACTTGGTAAGNGGTTGCCAAATTCTTGCCTTACTGCTGTT CTGCACATTGNGTCATGAGTCATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGA TG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8710#0      CGATACGGAGCGGAAGCAACGCTTGTGTTGTCGCGAGTCTCGTGACCTAGCCTAAGCGCC 60
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      GCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTC 120
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      CCCCTCCACGCGCTCGCCACCACCGCCGCTCCCCGAGTCCCGTGCGCGCCGCTGTCGACA 180
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      CCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCT 240
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      AGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTG 300
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      ACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAG 360
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      ATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTT 420
consensus_8710#1      ------------------------------------------AGTTTTCTGTTGAATTTC 18
                                                                  *       *   *** 

consensus_8710#0      CGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAG 480
consensus_8710#1      TGTTAGTTTTCTGTTGNNNTTCTAATA-TTGCAGTGTTACGGAGCTTCCTTAAAGTCTAG 77
                       **   ***   * *      *** *  ***  ***************************

consensus_8710#0      GCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTT 540
consensus_8710#1      GCATTATGCGTGGAAGAGGCAAGNACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTT 137
                      *********************** ************************************

consensus_8710#0      GGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAG 600
consensus_8710#1      GGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAG 197
                      ************************************************************

consensus_8710#0      CGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATG 660
consensus_8710#1      CGTACTTGGTAAGNGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGNGTCATG 257
                      ************* *************************************** ******

consensus_8710#0      AGTGATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAA 720
consensus_8710#1      AGTCATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATG--------------- 302
                      *** *****************************************               

consensus_8710#0      CAACAATATGATGATCATGGCAGAATGAAGCAATGAAGAAAAATTCATGTGATGGCTATA 780
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      TGTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTC 840
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      GGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTT 900
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      TATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACT 960
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      GCTAGCTACTATCATAAACATGAATGTCACAAAATCTGGTACTGTTGTATAAATTGCGTT 1020
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      CAACAGCTTGGTTGTCACAAAATGACTTCTAAAACAGAGAAATAGAGGATTTAATTTGTG 1080
consensus_8710#1      ------------------------------------------------------------
                                                                                  

consensus_8710#0      TT 1082
consensus_8710#1      --
                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)