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Oryza sativa
cluster # 8713 cluster # 8713       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8713#0 length = 847 sequences # 5  

consensusID : consensus_8713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 847
fasta sequence
                              [AGACGAAAGTCAGACAAGATGATGAATTGACCCCCACCTGGTCCATCAGACCAAAGTGCAATTGCTTGCCTCTACAAAAACACAGCTGTACATGACCATCTGCCGGTTTATACAGGTCAAGACAATATAAATATACTGTGCACCTCTAAAGAAAAGAGGGTAGAAAAATATACACCATGCCACGGTTGTTGTGACGCCGTACTATTTCATATCTAACCACAAGATTAGGAATTTACTCCCTCCGTCTCAAAATATAAGCATTTTTAGCCGTTGTCCAGATTCATAGCCAAAAGTTGTTATATTTTGGGACGGAGGTAGTAGGCAAAATAATATTCAGTGCAAATACAACAACTAGCATTTTACATGTACTACTTGTAGTAAGTACCATGTCACGATCATTGTCTGGAGTTGCTTGGCTGGTCCTGCTGCTGCTGCTGCTGGTGGTTTAGCTTCTGGTACATTGCCATCATCC-GGTTGTACGCCTCCATGCCGTTCGGTTGCTGTGCGTTTTGCTGCGCCGCTTGGGAGGCGAGGAAGGCGGAGAAGGCGTCGGAGGTGGCGGCGCCGGTGGGCTGCGGCGGTCGGTCGGCGGCGGCGGCGGAGGAGGAGGATGCGGCGGCGTCCCANGAGACGGGGAGGAAAGGGGGCGTGTGCATATGCATGGGCGCGTATCCGCCGGCCTGGCCCATGTTCATCATGCTGAGGCCGATCTGAGCCATCTGGGCCATCTGGGCCATGACGGACATCTGCAGCTGTGGCATGGCCATGCCCATGGGCATCATCATGCTGCCCATCCGGCTCATCACCTGCACCTGCGCCTGCAGCTGCTTCAGGTAGTCGATCACCT]

[+] EMBL CB624216             [AGACGAAAGTCAGACAAGATGATGAATTGACCCCCACCTGGTCCATCAGACCAAAGTGCAATTGCTTGCCTCTACAAAAACACAGCTGTACATGACCATCTGCCGGTTTATACAGGTCAAGACAATATAAATATACTGTGCACCTCTAAAGAAAAGAGGGTAGAAAAATATACACCATGCCACGGTTGTTGTGACGCCGTACTATTTCATATCTAACCACAAGATTAGGAATTTACTCCCTCCGTCTCAAAATATAAGCATTTTTAGCCGTTGTCCAGATTCATAGCCAAAAGTTGTTATATTTTGGGACGGAGGTAGTAGGCAAAATAATATTCAGTGCAAATACAACAACTAGCATTTTACATGTACTACTTGTAGTAAGTACCATGTCACGATCATTGTCTGGAGTTGCTTGGCTGGTCCTGCTGCTGCTGCTGCTGGTGGTTTAGCTTCTGGTACATTGCCATCATCC GGTTGTACGCCTCCATGCCGTTCGGTTGCTGTGCGTTTTGCTGCGCCGCTTGGGAGGCGAGGAAGGCGGAGAAGGCGTCGGAGGTGGCGGCGCCGGTGGGCTGCGGCGGTCGGTCGGCGGCGGCGGCGGAGGAGGAGGATGCGGCGGCGTCCCANGAGACGGGGAGGAAAGGGGGCGTGTGCATATGCATGGGCGCGTATCCGCCGGCCTGGCCCATGTTCATCATGCTGAGGCCGATCTGAGCCATCTGGGCCATCTGGGCCATGACGGACATCTGCAGCTGTGGCATGGCCATGCCCATGGGCATCATCATGCTGCCCATCCGGCTCATCACCTGCACCTGCGCCTGCAGCTGCTTCAGGTAGTCGATCACCT]
[-] EMBL CB684844             [         TCAGACAAGATGATGAATTGACCCCCACCTGGTCCATCAGACCAAAGTGCAATTGCTTGCCTCTACAAAAACACAGCTGTACATGACCATCTGCCGGTTTATACAGGTCAAGACAATATAAATATACTGTGCACCTCTAAAGAAAAGAGGGTAGAAAAATATACACCATGCCACGGTTGTTGTGACGCCGTACTATTTCATATCTAACCACAAGATTAGGAATTTACTCCCTCCGTCTCAAAATATAAGCATTTTTAGCCGTTGTCCAGATTCATAGCCAAAAGTTGTTATATTTTGGGACGGAGGTAGTAGGCAAAATAATATTCAGTGCAAATACAACAACTAGCATTTTACATGTACTACTTGTAGTAAGTACCATGTCACGATCATTGTCTGGAGTTGCTTGGCTGGTCCTGCTGCTGCTGCTGCTGGTGGTTTAGCTTCTGGTACATTGCCATCATCCTGGTTGTACGCCTCCATGCCGTTCGGTTGCTGTGCGTTTTGCTGAAGGGCTTG                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB678994             [              ccccttttTGAATTGACCCCCACCTGGGCCATCAAACCAAACCCCTATTGCTTGCCTCTACAAAAACACAGCTGTACATGACCATCTGCCGGTTTATACAGGTCAAGACAATATAAATATACTGGGCACCTCTAAAGAAAAGAGGGTAGAAAAATATACACCATGCCACGGTTGTTGTGACGCCGTACTATTTCATATCTAACCACAAGATTAGGAATTTACTCCCTCCGTCTCAAAATATAAGCATTTTTAGCCGTTGTCCAGATTCATAGCCAAAAGTTGTTATATTTTGGGACGGAGGTAGTAGGCAAAATAATATTCAGTGCAAATACAACAACTAGCATTTTACATGTACTACTTGTAGTAAGTACCATGTCACGATCATTGTCTGGAGTTGCTTGGCTGGTCCTGCTGCTGCTGCTGCTGGTGGTTTAGCTTCTGGTACATTGCCATCATCC GGTTGTACGCCTCCATGCCGTTCGGTTGCTGTGCGTTTTGCTGCGCCGCTTGGGAGGCGAGGAAGGCGGAGAAGGCGTCG                                                                                                                                                                                                                                                                                                       ]
[-] EMBL BE228682             [               ttttgtggGAATTGACCCCCACTTGGTCCATCAGACCAAAGTGCAATTGNTTGCNTCNACAAAAACACAGCTGTACATGACCATCTGCCGGTTNATACAGGTCAAGACAATATAAATATACTGTGCACCTCTAAAGAAAAGAGGGTAGAAAAATATACACCATGCaccagtct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CK085286             [                                                                                                                                                                                                                                                                                                            ATTTTGGGACGGAGGTAGTAGGCAAAATAATATTCAGTGCAAATACAACAACTAGCATTTTACATGTACTACTTGTAGTAAGTACCATGTCACGATCATTCTCTGGAGTTGCTTGGCTGGTCCTGCTGCTGCTGCTGCTGGTGGTTTAGCTTCTGGTACATTGCCATCATCC GGTTGTACGCCTCCATGCCGTTCGGTTGCTGTGCGTTTTGCTGCGCCGCTTGGGAGGCGAGGAAGGCGGAGAAGGCGTCGGAGGTGGCGGCGCCGGTGGGCTGCGGCGGTCGGTCGGCGGCGGCGGCGGAGGAGGAGGATGCGGCGGCGTCCCAGGAGACGGGGAGGAAAGGGGGCGTGTGCATATGCATGGGCGCGTATCCGCCGGCCTGGCCCATGTTCATCATGCTGAGGCCGATCTGAGCCATCTGGGCCATCTGGGCCATGACGGACATCTGCAGCTGTGGCATGGCCATGCCCATGGGCATCATCATGCTGCCCATCCGGCTCATCACCTGCACCTGCG                              ]


>consensus_8713#0 AGACGAAAGTCAGACAAGATGATGAATTGACCCCCACCTGGTCCATCAGACCAAAGTGCA ATTGCTTGCCTCTACAAAAACACAGCTGTACATGACCATCTGCCGGTTTATACAGGTCAA GACAATATAAATATACTGTGCACCTCTAAAGAAAAGAGGGTAGAAAAATATACACCATGC CACGGTTGTTGTGACGCCGTACTATTTCATATCTAACCACAAGATTAGGAATTTACTCCC TCCGTCTCAAAATATAAGCATTTTTAGCCGTTGTCCAGATTCATAGCCAAAAGTTGTTAT ATTTTGGGACGGAGGTAGTAGGCAAAATAATATTCAGTGCAAATACAACAACTAGCATTT TACATGTACTACTTGTAGTAAGTACCATGTCACGATCATTGTCTGGAGTTGCTTGGCTGG TCCTGCTGCTGCTGCTGCTGGTGGTTTAGCTTCTGGTACATTGCCATCATCCGGTTGTAC GCCTCCATGCCGTTCGGTTGCTGTGCGTTTTGCTGCGCCGCTTGGGAGGCGAGGAAGGCG GAGAAGGCGTCGGAGGTGGCGGCGCCGGTGGGCTGCGGCGGTCGGTCGGCGGCGGCGGCG GAGGAGGAGGATGCGGCGGCGTCCCANGAGACGGGGAGGAAAGGGGGCGTGTGCATATGC ATGGGCGCGTATCCGCCGGCCTGGCCCATGTTCATCATGCTGAGGCCGATCTGAGCCATC TGGGCCATCTGGGCCATGACGGACATCTGCAGCTGTGGCATGGCCATGCCCATGGGCATC ATCATGCTGCCCATCCGGCTCATCACCTGCACCTGCGCCTGCAGCTGCTTCAGGTAGTCG ATCACCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)