These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2765 fasta sequence [CACACCGCCACCGCCTCCCCCCAACCCGCCGCTTCCGTCTCCGATGGCCGCAGCGCCGCCGCCGCCACCGCCTCCGCAGCTGCAGTCCTCGGATCCCTCCACTCCGCCTCAGGAGACCAGCCAGGTACGCAAGGGAAAGAAGAGTCGTGGCGCGAAGAAACCTAGGAGAGCCGCCGCTGCCGCCGCCGCCTCGACCTCCTCGGCCGGCACGATGGTCGAGGACCCCTTCCTCGTACTCGCCGGAGGCAAGGAAGGAGGGTTCCTGGAGCTTGAGGAGATCGACGAGGCGGACTTCGGAATCTTTGGCGGTGCCGTGGAGGATCTAGGAGAAATTGACAGGAAGGCAGGAAAGGATCAGAAGAAGAAGAAGAGGAAGAAGCGGAAGCGAGGTGACGATGACTATGCTTTACCTGGTGATGGTGATTTGGTAGTTGGATGTGAGGAGGAGGGAGAGAAGGGTGAGAAGAGGGTGAAAAAGAAGAGGAGGAGCAGGAAGAAGAGAAAGGTGAAGGAAATGGAGGAAAAAATGGAGAGCAAGGAAGATGTCTCCGATGACAATGTGGAAGATATGCAAGATGGCGATGACATGGAACAAGATAACCATGATGGGCTGATTTTGGGAGAGGATGAAGTCTATGCATGGCGAGAGCTTAAACTGCACCCTCTTCTTATTACAGCGGTGCGCAGGCTTGGATTCAAAGAACCAACACCAATACAAAAGGCTTGCTTTCCTGCAGCCGCTCATCAAGGCAAGGATGTTATGGGTGCAGCAGAGACAGGTTCTGGTAAAACACTTGCTTTGGGCCTCCCTATCTTGCAGCGCCTTCTTGAAGAACAAGAGAAGGCCATGAGATTGTCTCGGGAGGATGAGAGTACACAAGATGAAAATTTTAGAGAAAGTCCACTTCGTGCTCTTATTTTAACACCCACCAGGGAGCTTGCCAAGCAGGTCTGCGATCATCTAAAAGAAGCAGCCAAGTTTTTAAGAATCCAAGTTGTTCCCCTTGTTGGTGGTCTATCCATGGAAAAGCAAGAACGGCTTCTGAAAAGGAAACCTGAGATTGTTGTTGGAACCCCAGGAAGATTGTGGGAGCTTATGTCCACAGGCAACCCACACCTAATTAAGTTACATTCATTATCATTCTTCGTGTTGGACGAGGCTGATAGAATGATAGAGCGAGGCCATTTCCATGAACTGCCATCTATCATTGAGATGTTACCCGTGACTAACGGTTCTGATGAACCAACTGTTGGGACCACGCCAAGTGGCGAAACTGTGCCTATATTGCAAATAAAGAAGAGACAGACATTTGTATTCTCAGCAACACTTGCTCTCTCAGCTAATTTTCGGAAAAAGTTGAAGCGAGGCCTAGTTACTGCAAAAGCGTCTGCATCTACTGATTTGAGTTCTATTGAAGCACTTTCGAAGCAGGCCCGTATGAAACCTAACGCAGAAATAGTTGATCTGACGAAGGCTTCTATCTTACCTGAGAAACTTGAAGAGTCTTTTATTGAGTGTAGTGATGATGATAAGTATGCCTACCTGTATTATATATTGAGTGTCCATGGACAAGGCCGCACAATAATATTTTGTACATCAATAGCTGCATTACGTCACCTTTCATCTATATTACGAGTTCTTGGAATTAATGTCCTGACAAATCATGCTCAAATGCAACAAAGGGCTCGCATGAAGGCTGTGGATCGTTTCCGTGAAAGTGAAAATTCAATTTTGGTTGCAACTGATGGTTTTGCAAGGGGCATGGATTTTGATGATGTCCGAACTGTGATTCATTATCAATTGCCACACTCAACTGATGTTTACATCCACAGAAGTGGAAGGACAGCGCGGAAATCAATGGCAGGTTGCAGCATTGCATTAATCTCTCCTGCAGACAAGGCCAAGTTTTACTCACTTTGCAAGTCACTGTCAAAGGAGAACCTCCAGCAGTTTCCTGTTGACCATGCTTACATGCCTGCAGTAATGAATAGGCTCACCCTTGCTCGGCAGATTGACAAGATTACACGTAAAAATTCCCAGGAAAATGCCAACAAATCATGGCTTCAGAGGAATGCTGAGTCCATGGGATTATTATTGGAGACAAGTGACAGTGAGGAGGAACGTGTACAGGGGCATAAGCAAAGGAAAGCAACTTCTGCGAACCTCCAGAAGCTTCAACAGGATTTGAGTGAGCTCTTGCAACGCCCCTTGCAGCCTAAGACTTTTTCGCGGCGCTATTTAGCTGGGGCTGGTGTTTCACCGTTACTTCAAAAGCAACTGGAAGAGTTGTCCAAAAGGAATGTTAAGGGCAGTGCTAGTGTAAATGCAAATAAAGGATCCCGATTTGTTGTTATTGGTCAGGATCAAATAGAACCCTTGCAAGCTCTTCAGAATTCTGGGCAAGAGGTGTGTGTGAGCATTGACAAGCAAAGAGAAAAGCGAAGGCTTGCTGAAAATTGGAGGCGAAAGAAGCA-AAAAGAGAAGAAAAGTACA-CGAGAGCAAAAGAGAAAGGAGAAGAGGATAGCTAAAGAAAGGGACTAAATGACAACGTTGTCCAACTACTCATCATTGTAGGCACTA-CA-TTGT-TACTGTTGGGAAACAAGTTTTGGGGGTGTTGGATATCATTTTTGCAATTGAAGATAGGGTTATAATCAACTGTACCAGCATCATATCTGAGCATCAACTGTGGCATGCATGATACCCACCAGTTTATTGATCTGATGGTTGCTGGATGCATGAAAAAAAAAAGACAACCACATAAAAA] [+] EMBL AK072655 [CACACCGCCACCGCCTCCCCCCAACCCGCCGCTTCCGTCTCCGATGGCCGCAGCGCCGCCGCCGCCACCGCCTCCGCAGCTGCAGTCCTCGGATCCCTCCACTCCGCCTCAGGAGACCAGCCAGGTACGCAAGGGAAAGAAGAGTCGTGGCGCGAAGAAACCTAGGAGAGCCGCCGCTGCCGCCGCCGCCTCGACCTCCTCGGCCGGCACGATGGTCGAGGACCCCTTCCTCGTACTCGCCGGAGGCAAGGAAGGAGGGTTCCTGGAGCTTGAGGAGATCGACGAGGCGGACTTCGGAATCTTTGGCGGTGCCGTGGAGGATCTAGGAGAAATTGACAGGAAGGCAGGAAAGGATCAGAAGAAGAAGAAGAGGAAGAAGCGGAAGCGAGGTGACGATGACTATGCTTTACCTGGTGATGGTGATTTGGTAGTTGGATGTGAGGAGGAGGGAGAGAAGGGTGAGAAGAGGGTGAAAAAGAAGAGGAGGAGCAGGAAGAAGAGAAAGGTGAAGGAAATGGAGGAAAAAATGGAGAGCAAGGAAGATGTCTCCGATGACAATGTGGAAGATATGCAAGATGGCGATGACATGGAACAAGATAACCATGATGGGCTGATTTTGGGAGAGGATGAAGTCTATGCATGGCGAGAGCTTAAACTGCACCCTCTTCTTATTACAGCGGTGCGCAGGCTTGGATTCAAAGAACCAACACCAATACAAAAGGCTTGCTTTCCTGCAGCCGCTCATCAAGGCAAGGATGTTATGGGTGCAGCAGAGACAGGTTCTGGTAAAACACTTGCTTTGGGCCTCCCTATCTTGCAGCGCCTTCTTGAAGAACAAGAGAAGGCCATGAGATTGTCTCGGGAGGATGAGAGTACACAAGATGAAAATTTTAGAGAAAGTCCACTTCGTGCTCTTATTTTAACACCCACCAGGGAGCTTGCCAAGCAGGTCTGCGATCATCTAAAAGAAGCAGCCAAGTTTTTAAGAATCCAAGTTGTTCCCCTTGTTGGTGGTCTATCCATGGAAAAGCAAGAACGGCTTCTGAAAAGGAAACCTGAGATTGTTGTTGGAACCCCAGGAAGATTGTGGGAGCTTATGTCCACAGGCAACCCACACCTAATTAAGTTACATTCATTATCATTCTTCGTGTTGGACGAGGCTGATAGAATGATAGAGCGAGGCCATTTCCATGAACTGCCATCTATCATTGAGATGTTACCCGTGACTAACGGTTCTGATGAACCAACTGTTGGGACCACGCCAAGTGGCGAAACTGTGCCTATATTGCAAATAAAGAAGAGACAGACATTTGTATTCTCAGCAACACTTGCTCTCTCAGCTAATTTTCGGAAAAAGTTGAAGCGAGGCCTAGTTACTGCAAAAGCGTCTGCATCTACTGATTTGAGTTCTATTGAAGCACTTTCGAAGCAGGCCCGTATGAAACCTAACGCAGAAATAGTTGATCTGACGAAGGCTTCTATCTTACCTGAGAAACTTGAAGAGTCTTTTATTGAGTGTAGTGATGATGATAAGTATGCCTACCTGTATTATATATTGAGTGTCCATGGACAAGGCCGCACAATAATATTTTGTACATCAATAGCTGCATTACGTCACCTTTCATCTATATTACGAGTTCTTGGAATTAATGTCCTGACAAATCATGCTCAAATGCAACAAAGGGCTCGCATGAAGGCTGTGGATCGTTTCCGTGAAAGTGAAAATTCAATTTTGGTTGCAACTGATGGTTTTGCAAGGGGCATGGATTTTGATGATGTCCGAACTGTGATTCATTATCAATTGCCACACTCAACTGATGTTTACATCCACAGAAGTGGAAGGACAGCGCGGAAATCAATGGCAGGTTGCAGCATTGCATTAATCTCTCCTGCAGACAAGGCCAAGTTTTACTCACTTTGCAAGTCACTGTCAAAGGAGAACCTCCAGCAGTTTCCTGTTGACCATGCTTACATGCCTGCAGTAATGAATAGGCTCACCCTTGCTCGGCAGATTGACAAGATTACACGTAAAAATTCCCAGGAAAATGCCAACAAATCATGGCTTCAGAGGAATGCTGAGTCCATGGGATTATTATTGGAGACAAGTGACAGTGAGGAGGAACGTGTACAGGGGCATAAGCAAAGGAAAGCAACTTCTGCGAACCTCCAGAAGCTTCAACAGGATTTGAGTGAGCTCTTGCAACGCCCCTTGCAGCCTAAGACTTCTTCGCGGCGCTATTTAGCTGGGGCTGGTGTTTCACCGTTACTTCAAAAGCAACTGGAAGAGTTGTCCAAAAGGAATGTTAAGGGCAGTGCTAGTGTAAATGCAAATAAAGGATCCCGATTTGTTGTTATTGGTCAGGATCAAATAGAACCCTTGCAAGCTCTTCAGAATTCTGGGCAAGAGGTGTGTGTGAGCATTGACAAGCAAAGAGAAAAGCGAAGGCTTGCTGAAAATTGGAGGCGAAAGAAGCA AAAAGAGAAGAAAAGTACA CGAGAGCAAAAGAGAAAGGAGAAGAGGATAGCTAAAGAAAGGGACTAAATGACAACGTTGTCCAACTACTCATCATTGTAGGCACTA CA TTGT TACTGTTGGGAAACAAGTTTTGGGGGTGTTGGATATCATTTTTGCAATTGAAGATAGGGTTATAATCAACTGTACCAGCATCATATCTGAGCATCAACTGT ] [+] EMBL CB633547 [ GCCGCTTCCGTCTCCGATGGCCGCAGCGCCGCCGCCGCCACCGCCTCCGCAGCTGCAGTCCTCGGATCCCTCCACTCCGCCTCAGGAGACCAGCCAGGTACGCAAGGGAAAGAAGAGTCGTGGCGCGAAGAAACCTAGGAGAGCCGCCGCTGCCGCCGCCGCCTCGACCTCCTCGGCCGGCACGATGGTCGAGGACCCCTTCCTCGTACTCGCCGGAGGCAAGGAAGGAGGGTTCCTGGAGCTTGAGGAGATCGACGAGGCGGACTTCGGAATCTTTGGCGGTGCCGTGGAGGATCTAGGAGAAATTGACAGGAAGGCAGGAAAGGATCAGAAGAAGAAGAAGAGGAAGAAGCGGAAGCGAGGTGACGATGACTATGCTTTACCTGGTGATGGTGATTTGGTAGTTGAATGTGAGGAGGAGGGAGAGAAGGGTGAGAAGAGGGTGAAAAAGAAGAGGAGGAGCAGGAAGAAGAGAAAGGTGAAGGAAATGGAGGAAAAAATGGAGAGCAAGGAAGATGTCTCCGATGACAATGTGGAAGATATGCAAGATGGCAATGACATGGAACAAGATAACAATGATGGGCTGATTTTGGGAGAGGATGAAGTCTATGCATGGCGAGAGCTTAGACTGCACCCTCTTCTTATTACAGCGGTGCGCAGGCTTGGATTCAAAGAACCAACACCAATACAAAAGGCTTGCTTTCCTGCAGCGGCTCATCAAGGCAAGGATGTTATTGGTGCAGCAGAGACAGGTTCTGG ] [+] EMBL AK103972 [ GCATTACGTCACCTTTCATCTATATTACGAGTTCTTGGAATTAATGTCCTGACAAATCATGCTCAAATGCAACAAAGGGCTCGCATGAAGGCTGTGGATCGTTTCCGTGAAAGTGAAAATTCAATTTTGGTTGCAACTGATGGTTTTGCAAGGGGCATGGATTTTGATGATGTCCGAACTGTGATTCATTATCAATTGCCACACTCAACTGATGTTTACATCCACAGAAGTGGAAGGACAGCGCGGAAATCAATGGCAGGTTGCAGCATTGCATTAATCTCTCCTGCAGACAAGGCCAAGTTTTACTCACTTTGCAAGTCACTGTCAAAGGAGAACCTCCAGCAGTTTCCTGTTGACCATGCTTACATGCCTGCAGTAATGAATAGGCTCACCCTTGCTCGGCAGATTGACAAGATTACACGTAAAAATTCCCAGGAAAATGCCAACAAATCATGGCTTCAGAGGAATGCTGAGTCCATGGGATTATTATTGGAGACAAGTGACAGTGAGGAGGAACGTGTACAGGGGCATAAGCAAAGGAAAGCAACTTCTGCGAACCTCCAGAAGCTTCAACAGGATTTGAGTGAGCTCTTGCAACGCCCCTTGCAGCCTAAGACTTTTTCGCGGCGCTATTTAGCTGGGGCTGGTGTTTCACCGTTACTTCAAAAGCAACTGGAAGAGTTGTCCAAAAGGAATGTTAAGGGCAGTGCTAGTGTAAATGCAAATAAAGGATCCCGATTTGTTGTTATTGGTCAGGATCAAATAGAACCCTTGCAAGCTCTTCAGAATTCTGGGCAAGAGGTGTGTGTGAGCATTGACAAGCAAAGAGAAAAGCGAAGGCTTGCTGAAAATTGGAGGCGAAAGAAGCA AAAAGAGAAGAAAAGTACA CGAGAGCAAAAGAGAAAGGAGAAGAGGATAGCTAAAGAAAGGGACTAAATGACAACGTTGTCCAACTACTCATCATTGTAGGCACTA CA TTGT TACTGTTGGGAAACAAGTTTTGGGGGTGTTGGATATCATTTTTGCAATTGAAGATAG ] [-] EMBL CB633548 [ TGTTGACCATGCTTACATGCCTGCAGTAATGAATAGGCTCACCCTTGCTCGGCAGATTGACAAGATTACACGTAAAAATTCCCAGGAAAATGCCAACAAATCATGGCTTCAGAGGAATGCTGAGTCCATGGGATTATTATTGGAGACAAGTGACAGTGAGGAGGAACGTGTACAGGGGCATAAGCAAAGGAAAGCAACTTCTGCGAACCTCCAGAAGCTTCAACAGGATTTGAGTGAGCTCTTGCAACGCCCCTTGCAGCCTAAGACTTTTTCGCGGCGCTATTTAGCTGGGGCTGGTGTTTCACCGTTACTTCAAAAGCAACTGGAAGAGTTGTCCAAAAGGAATGTTAAGGGCAGTGCTAGTGTAAATGCAAATAAAGGATCCCGATTTGTTGTTATTGGTCAGGATCAAATAGAACCCTTGCAAGCTCTTCAGAATTTTGGGCAAGAGGTGTGTGTGAGCATTGACAAGCAAAGAGAAAAGCGAAGGCTTGCTGAAAATTGGAGGCGAAAGAAGCA AAAAGAGAAGAAAAGTACA CGAGAGCAAAAGAGAAAGGAGAAGAGGATAGCTAAAGAAAGGGACTAAATGACAACGTTGTCCAACTACTCATCATTGTAGGCACTA CA TTGT TACTGTTGGGAAACAAGTTTTGGGGGTGTTGGATATCATTTTTGCAATTGAAGATAGGGTTATAATCAACTGTACCAGCATCATATTTGAGCATCAACTGTGGCATGCATGATACCCACCAGTTTATTGATCTGATGGTTGCTGGATGCATGAAAAAAAAAAGA ] [+] EMBL BQ906477 [ TAAATGCAAATAAAGGATCCCGATTTGTTGTTATTGGTCAGGATCAAATAGAACCCTTGCAAGCTCTTCAGAATTCTGGGCAAGAGGTGTGTGTGAGCATTGACAAGCAAAGAGAAAAGCGAAGGCTTGCTGAAAATTGGAGGCGAAAGAAGCACAAAAGAGAAGAAAAGTACACCGAGAGCAAAAGAGAAAGGAGAAGAGGATAGCTAAAGAAAGGGACTAAATGACAACGTTGTCCAACTACTCATCATTGTAGGCACTACCACTTGTNCCCTGTTGGGAAACAAGTTTTGGGGGTGTTGGATATCATTTTTGCAATTGAAGATAGGGTTATAATCAACTGTACCAGCATCATATCTGAGCATCAACTGTGGCATGCATGATACCCACCAGTTTATTGATCTGATGGTTGCTGGACGCCTGAAATATTTTCTTCAACCACATAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||