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Oryza sativa
cluster # 8716 cluster # 8716       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8716#0 length = 1675 sequences # 1  
consensus_8716#1 length = 1540 sequences # 3  
consensus_8716#2 length = 309 sequences # 1  

consensusID : consensus_8716#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1675
fasta sequence
                              [TCGCTCGTTCGATCCGAGCGGGGTATCGTCGTGGTTATGGGGAAGCTGCTGGACCTGAAGCGGCTCATGTCCGTGCCGAAGGAGCGGAATCGTCGTCGGCGGTAGCGGCAAATCCGAGCCCGCAATGGTTCAATTGATTCAGTGGCTAAAAGAAAGGGATCACTCTGCCAACAAGTTGCAAATTCTGATGGCGAGAGAAGAACAAGATATTCAGGGCCTAACCTTCCAGAGGACATCTGGTGCCATATACACTCCCTGATGCCATTCAAAGATGCTGCCCGTGCTGCATGTGTGTCTCATGCTTTTCGTCGTTCCTGGCAACACCGCCCCAATCTTATATTTTGTATTGGAACACTGGGGTTGGATTTCATCAACAAAATTGATCGTATTATAAAAAACCACTCAGGCATTGGCATCAAATCGCTACAGTTAGAATATGATACTTTTTGCAATGCTAGAAGGAGCGCTAGCATCAGCTATCATCTCAATAATTGGCTTCAGATTGCTGTTACACCATGGATTGAAGAACTAATCCTTACACTGTCGCTATCTTCATACAATGTGGATTACAATTTCCCGTGCTCACTTTTATCTGATGGGAGAGGAAGTTCATTGCGACATCTTTATCTTGGCAGTTGTTTCTTTCATCCTACAGTTAATCTTGAATTGAGAAACCTGACGAGGTTGCATCTGGTTACTGTACATATTACAGGAGATGAGTTTGGGTGCCTTCTTTCGAATTCTTATGCTTTGGAGCGATTGGAACTTAAATATTGTTATGGAATAATTTGTCTGAAGATACCTTGCCTGTTGCAACGCCTTAGCCACCTGGAAGTGTTTGAATGCAGAATGCTGCAAGCCATAGAGAATAAGGCTCCAAATCTTTGCAGTTTTGACCTTGGAGCTAGGCAGGTACGGCTCTTGCTTGGTGAATCATTGCAAATGAAAACACTATCCTTGGACTATCCTAGTGCCGTCTATTATGCTCGTGCAGAGCTTCCATCCAATGTGCCAAATCTTGAAATTCTCACCATTTGCTCGGATCACGAGATGGTTGATACACCAATGTTGCCTAGCAAATTTTTCTATCTCAAGTGCTTGACTATTGATCTTGCTTGGAGACTTTCCCCAGCCTATGATTATTTCTCTCTGATTTCTTTTCTTGACGCTTCTCCTTCCTTGGAGACTTTTTGTCTAGAGGACCGAATGGAGAATGAATTGATTATTGGAGATATGTCACATATGAGGCAAATGCTAGAACACCGTCATGACAACCTCCAGAGCGTGGAGATTATTGGCTTTTGCTATACAAAGAGCTTGATCGAGCTAACATGTCATATTCTTGACAATACAACGTCGCTTAAGCACCTTAAACTGGATACTACTCGTGATGTTTTTAGCTGTTCTACAGGCAAACACGACAAATGCTTCCATATGGGTAAGGATATGCTCACCGAAGCCAAGAAAGCAGTTTTGGCAATTGAAACTTACATCGAGCCAAAAGTTCCCTCCACTGTCATGCTAAATGTTGTGAAACCTTGCAACCGTTGCCATGTTGCTGAATCTTAGTTCTATTTTTTTCCTAACATAATTCCTATGTAGATGATTATGGAGTTTTTTAACTGATCATGTTTTCTGTCTTCACACAACTGAATTACGAGTCACATCCAATTGA]

[+] EMBL AK071140             [TCGCTCGTTCGATCCGAGCGGGGTATCGTCGTGGTTATGGGGAAGCTGCTGGACCTGAAGCGGCTCATGTCCGTGCCGAAGGAGCGGAATCGTCGTCGGCGGTAGCGGCAAATCCGAGCCCGCAATGGTTCAATTGATTCAGTGGCTAAAAGAAAGGGATCACTCTGCCAACAAGTTGCAAATTCTGATGGCGAGAGAAGAACAAGATATTCAGGGCCTAACCTTCCAGAGGACATCTGGTGCCATATACACTCCCTGATGCCATTCAAAGATGCTGCCCGTGCTGCATGTGTGTCTCATGCTTTTCGTCGTTCCTGGCAACACCGCCCCAATCTTATATTTTGTATTGGAACACTGGGGTTGGATTTCATCAACAAAATTGATCGTATTATAAAAAACCACTCAGGCATTGGCATCAAATCGCTACAGTTAGAATATGATACTTTTTGCAATGCTAGAAGGAGCGCTAGCATCAGCTATCATCTCAATAATTGGCTTCAGATTGCTGTTACACCATGGATTGAAGAACTAATCCTTACACTGTCGCTATCTTCATACAATGTGGATTACAATTTCCCGTGCTCACTTTTATCTGATGGGAGAGGAAGTTCATTGCGACATCTTTATCTTGGCAGTTGTTTCTTTCATCCTACAGTTAATCTTGAATTGAGAAACCTGACGAGGTTGCATCTGGTTACTGTACATATTACAGGAGATGAGTTTGGGTGCCTTCTTTCGAATTCTTATGCTTTGGAGCGATTGGAACTTAAATATTGTTATGGAATAATTTGTCTGAAGATACCTTGCCTGTTGCAACGCCTTAGCCACCTGGAAGTGTTTGAATGCAGAATGCTGCAAGCCATAGAGAATAAGGCTCCAAATCTTTGCAGTTTTGACCTTGGAGCTAGGCAGGTACGGCTCTTGCTTGGTGAATCATTGCAAATGAAAACACTATCCTTGGACTATCCTAGTGCCGTCTATTATGCTCGTGCAGAGCTTCCATCCAATGTGCCAAATCTTGAAATTCTCACCATTTGCTCGGATCACGAGATGGTTGATACACCAATGTTGCCTAGCAAATTTTTCTATCTCAAGTGCTTGACTATTGATCTTGCTTGGAGACTTTCCCCAGCCTATGATTATTTCTCTCTGATTTCTTTTCTTGACGCTTCTCCTTCCTTGGAGACTTTTTGTCTAGAGGACCGAATGGAGAATGAATTGATTATTGGAGATATGTCACATATGAGGCAAATGCTAGAACACCGTCATGACAACCTCCAGAGCGTGGAGATTATTGGCTTTTGCTATACAAAGAGCTTGATCGAGCTAACATGTCATATTCTTGACAATACAACGTCGCTTAAGCACCTTAAACTGGATACTACTCGTGATGTTTTTAGCTGTTCTACAGGCAAACACGACAAATGCTTCCATATGGGTAAGGATATGCTCACCGAAGCCAAGAAAGCAGTTTTGGCAATTGAAACTTACATCGAGCCAAAAGTTCCCTCCACTGTCATGCTAAATGTTGTGAAACCTTGCAACCGTTGCCATGTTGCTGAATCTTAGTTCTATTTTTTTCCTAACATAATTCCTATGTAGATGATTATGGAGTTTTTTAACTGATCATGTTTTCTGTCTTCACACAACTGAATTACGAGTCACATCCAATTGA]


>consensus_8716#0 TCGCTCGTTCGATCCGAGCGGGGTATCGTCGTGGTTATGGGGAAGCTGCTGGACCTGAAG CGGCTCATGTCCGTGCCGAAGGAGCGGAATCGTCGTCGGCGGTAGCGGCAAATCCGAGCC CGCAATGGTTCAATTGATTCAGTGGCTAAAAGAAAGGGATCACTCTGCCAACAAGTTGCA AATTCTGATGGCGAGAGAAGAACAAGATATTCAGGGCCTAACCTTCCAGAGGACATCTGG TGCCATATACACTCCCTGATGCCATTCAAAGATGCTGCCCGTGCTGCATGTGTGTCTCAT GCTTTTCGTCGTTCCTGGCAACACCGCCCCAATCTTATATTTTGTATTGGAACACTGGGG TTGGATTTCATCAACAAAATTGATCGTATTATAAAAAACCACTCAGGCATTGGCATCAAA TCGCTACAGTTAGAATATGATACTTTTTGCAATGCTAGAAGGAGCGCTAGCATCAGCTAT CATCTCAATAATTGGCTTCAGATTGCTGTTACACCATGGATTGAAGAACTAATCCTTACA CTGTCGCTATCTTCATACAATGTGGATTACAATTTCCCGTGCTCACTTTTATCTGATGGG AGAGGAAGTTCATTGCGACATCTTTATCTTGGCAGTTGTTTCTTTCATCCTACAGTTAAT CTTGAATTGAGAAACCTGACGAGGTTGCATCTGGTTACTGTACATATTACAGGAGATGAG TTTGGGTGCCTTCTTTCGAATTCTTATGCTTTGGAGCGATTGGAACTTAAATATTGTTAT GGAATAATTTGTCTGAAGATACCTTGCCTGTTGCAACGCCTTAGCCACCTGGAAGTGTTT GAATGCAGAATGCTGCAAGCCATAGAGAATAAGGCTCCAAATCTTTGCAGTTTTGACCTT GGAGCTAGGCAGGTACGGCTCTTGCTTGGTGAATCATTGCAAATGAAAACACTATCCTTG GACTATCCTAGTGCCGTCTATTATGCTCGTGCAGAGCTTCCATCCAATGTGCCAAATCTT GAAATTCTCACCATTTGCTCGGATCACGAGATGGTTGATACACCAATGTTGCCTAGCAAA TTTTTCTATCTCAAGTGCTTGACTATTGATCTTGCTTGGAGACTTTCCCCAGCCTATGAT TATTTCTCTCTGATTTCTTTTCTTGACGCTTCTCCTTCCTTGGAGACTTTTTGTCTAGAG GACCGAATGGAGAATGAATTGATTATTGGAGATATGTCACATATGAGGCAAATGCTAGAA CACCGTCATGACAACCTCCAGAGCGTGGAGATTATTGGCTTTTGCTATACAAAGAGCTTG ATCGAGCTAACATGTCATATTCTTGACAATACAACGTCGCTTAAGCACCTTAAACTGGAT ACTACTCGTGATGTTTTTAGCTGTTCTACAGGCAAACACGACAAATGCTTCCATATGGGT AAGGATATGCTCACCGAAGCCAAGAAAGCAGTTTTGGCAATTGAAACTTACATCGAGCCA AAAGTTCCCTCCACTGTCATGCTAAATGTTGTGAAACCTTGCAACCGTTGCCATGTTGCT GAATCTTAGTTCTATTTTTTTCCTAACATAATTCCTATGTAGATGATTATGGAGTTTTTT AACTGATCATGTTTTCTGTCTTCACACAACTGAATTACGAGTCACATCCAATTGA



consensusID : consensus_8716#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1540
fasta sequence
                              [GTTCCATTGATTCAGCGGCTAAAAGAAAGGGATCACTCTGTCAACAAGTTGCAAATTCTGAAGGCAACAAAAAAACAACATATTCAGGGCTAGACCTTCCAGAGGAAATCTGGTGCCATATACACTCCCTAATGGCATTCAAAGATGCCGCCCGTGCTACATGTGTGTCTCGTGCTTTTCATCGTTCCTGGCAATGCCATCCCAATCTTATATTTTGTATTGGAATACTGGGCTCGGATTTCATCAACAAATTTGATCGCATTGTGAAAAACCACTCAGGCATTGGCATCAAGTCGGTAAACTTTGAATATGATAGTTCTTACAATACTAGAAGGAGCACTAGCATCAGCCATCATTTTGATAGTTGGCTTCATATTGCTATTACACCATGGATCGAAAAACTCTCCCTTAGGCTATCTCATTATTCATAAAATGTGGAGTACAACTTACCATGCACAATTCTGTCTGATGGGAGAGCAAGCTCAATGCGACATCTTTATCTTGGCAGTTGTAGCTTCCATCCCACAATCAACCTTGACTTGAGAAGCCTGATGAAGTTGCATCTGTTTAATGTCCATATTACAGGAGATGAGTTAGGGTGCCTTCTCTTCAGTTGTTATGCTTTGGAGTGGTTGGAACTTGAGCATTGTGATGAAATAGTTTGCATGAAGGTACCTTGTCAGTTGCAACGCCTCAATCACCTGAAAGTGTTTGAATGCAGAATGCTGCAAGTAATAGAGAATAAGGCTCCAAATATTTGCAGTTTTGATTTTGGAGGTAAACACGTACAACTCTTGCTTGGTGAATCGTTGCAGATGAAGACACTATCTTTGCAATACTATTGCAACGCTGTCTATTATGCTCGTGTAGAGTCTATACCCAATGTGCCAAATCTTGAAACTCTCACCATTTGCTCGTATCACGAGATGGTTAACACACCAATGTTGCCTAGCAAATTCCTCCATCTCAAGTGTTTGACTATCGATCTTGCTGAAGTTTCCCATGCATATGATTATTTCTCTCTAGTTTCTTTTCTTGATGCTTCTCCTTTCTTGGAGACTTTACTTCTGGGTGTAAGATAATTTTCATTCTGCAAAGTTATCTAGTGTCTATGGTAGTAACCATCAATTAAAGTATATTTGGCTTTTCATCTCCAGATACCAAAGGACAGCATGGAGGATGACTCAATTTTTGGAGATTCCTCAAATATGAGGCAGATGCAAGAATATCGTCATGACAACCTCCAGAGTGTGGTGATCACTTGTTTCTGCTCCGCGAAGAGCTTGATCGAGCTAACATGTTGTATTCTTGACTGTACAACGTCACTTGAGTACCTTACACTGGATACTACTCGTGGTGTTTATAGCTGTTCTACAGGTAAACACAGCCAATGCTTTCCTATGGACAAGGCCATGATCCCTAAAGCCAACAGGGCTATGTTGGCTGTCGAAACATAAATTGAACGAAAAGTTCCTTCCACAGTTAAGTTAAATGTTGTGAAACCTTGCCCCCTTTAAGGATAATTGAATCTTAGTTGTAA]

[+] EMBL CB645012             [GTTCCATTGATTCAGCGGCTAAAAGAAAGGGATCACTCTGTCAACAAGTTGCAAATTCTGAAGGCAACAAAAAAACAACATATTCAGGGCTAGACCTTCCAGAGGAAATCTGGTGCCATATACACTCCCTAATGGCATTCAAAGATGCCGCCCGTGCTACATGTGTGTCTCGTGCTTTTCATCGTTCCTGGCAATGCCATCCCAATCTTATATTTTGTATTGGAATACTGGGCTCGGATTTCATCAACAAATTTGATCGCATTGTGAAAAACCACTCAGGCATTGGCATCAAGTCGGTAAACTTTGAATATGATAGTTCTTACAATACTAGAAGGAGCACTAGCATCAGCCATCATTTTGATAGTTGGCTTCATATTGCTATTACACCATGGATCGAAAAACTCTCCCTTAGGCTATCTCATTATTCATAAAATGTGGAGTACAACTTACCATGCACAATTCTGTCTGATGGGAGAGCAAGCTCAATGCGACATCTTTATCTTGGCAGTTGTAGCTTCCATCCCACAATCAACCTTGACTTGAGAAGCCTGATGAAGTTGCATCTGTTTAATGTCCATATTACAGGAGATGAGTTAGGGTGCCTTCTCTTCAGTTGTTATGCTTTGGAGTGGTTGGAACTTGAGCATTGTGATGAAATAGTTTGCATGAAGGTACCTTGTCAGTTGCAACGCCTCAATCACCTGAAAGTGTTTGAATGCAGAATGCTGCAAGTAATAGAGAATAAGGCTCCAAATATTTGCAGTTTTGATTTTGGAGGTAAACACGTACAACTCTTGCTTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB664187             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGCTTTGGAGTGGTTGGAACTGNAGCATTGTGATGAAATAGTTTGCATGAAGGTACCTTGTCAGTTGCAACGCCTCAATCACCTGAAAGTGTTTGAATGCAGAATGCTGCAAGTAATAGAGAATAAGGCTCCAAATATTTGCAGTTTTGATTTTGGAGGTAAACACGTACAACTCTTGCTTGGTGAATCGTTGCAGATGAAGACACTATCTTTGCAATACTATTGCAACGCTGTCTATTATGCTCGTGTAGAGTCTATACCCAATGTGCCAAATCTTGAAACTCTCACCATTTGCTCGTATCACGAGATGGTTAACACACCAATGTTGCCTAGCAAATTCCTCCATCTCAAGTGTTTGACTATCGATCTTGCTGAAGTTTCCCATGCATATGATTATTTCTCTCTAGTTTCTTTTCTTGATGCTTCTCCTTTCTTGGAGACTTTACTTCTGGGTGTAAGATAATTTTCATTCTGCAAAGTTATCTAGTGTCTATGGTAGTAACCATCAATTAAAGTATATTTGGCTTTTCATCTCCAGATACCAAAGGACAGCATGGAGGATGACTCAATTTTTGGAGATTCCTCAAATATGAGGCAGATGCAAGAATATCGTCATGACAACCTCCAGAGTGTGGTGATCACTTGTTTCTGCTCCGCGAAGAGCTTGATCGAGCTAACATGTTGTATTCTTGACTGTACAACGTCACTTGAGTACCTTACA                                                                                                                                                                                                        ]
[-] EMBL CB645013             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCTTGGTGAATCGTTGCAGATGAAGACACTATCTTTGCAATACTATTGCAACGCTGTCTATTATGCTCGTGTAGAGTCTATACCCAATGTGCCAAATCTTGAAACTCTCACCATTTGCTCGTATCACGAGATGGTTAACACACCAATGTTGCCTAGCAAATTCCTCCATCTCAAGTGTTTGACTATCGATCTTGCTGAAGTTTCCCATGCATATGATTATTTCTCTCTAGTTTCTTTTCTTGATGCTTCTCCTTTCTTGGAGACTTTACTTCTGGGTGTAAGATAATTTTCATTCTGCAAAGTTATCTAGTGTCTATGGTAGTAACCATCAATTAAAGTATATTTGGCTTTTCATCTCCAGATACCAAAGGACAGCATGGAGGATGACTCAATTTTTGGAGATTCCTCAAATATGAGGCAGATGCAAGAATATCGTCATGACAACCTCCAGAGTGTGGTGATCACTTGTTTCTGCTCCGCGAAGAGCTTGATCGAGCTAACATGTTGTATTCTTGACTGTACAACGTCACTTGAGTACCTTACACTGGATACTACTCGTGGTGTTTATAGCTGTTCTACAGGTAAACACAGCCAATGCTTTCCTATGGACAAGGCCATGATCCCTAAAGCCAACAGGGCTATGTTGGCTGTCGAAACATAAATTGAACGAAAAGTTCCTTCCACAGTTAAGTTAAATGTTGTGAAACCTTGCCCCCTTTAAGGATAATTGAATCTTAGTTGTAA]


>consensus_8716#1 GTTCCATTGATTCAGCGGCTAAAAGAAAGGGATCACTCTGTCAACAAGTTGCAAATTCTG AAGGCAACAAAAAAACAACATATTCAGGGCTAGACCTTCCAGAGGAAATCTGGTGCCATA TACACTCCCTAATGGCATTCAAAGATGCCGCCCGTGCTACATGTGTGTCTCGTGCTTTTC ATCGTTCCTGGCAATGCCATCCCAATCTTATATTTTGTATTGGAATACTGGGCTCGGATT TCATCAACAAATTTGATCGCATTGTGAAAAACCACTCAGGCATTGGCATCAAGTCGGTAA ACTTTGAATATGATAGTTCTTACAATACTAGAAGGAGCACTAGCATCAGCCATCATTTTG ATAGTTGGCTTCATATTGCTATTACACCATGGATCGAAAAACTCTCCCTTAGGCTATCTC ATTATTCATAAAATGTGGAGTACAACTTACCATGCACAATTCTGTCTGATGGGAGAGCAA GCTCAATGCGACATCTTTATCTTGGCAGTTGTAGCTTCCATCCCACAATCAACCTTGACT TGAGAAGCCTGATGAAGTTGCATCTGTTTAATGTCCATATTACAGGAGATGAGTTAGGGT GCCTTCTCTTCAGTTGTTATGCTTTGGAGTGGTTGGAACTTGAGCATTGTGATGAAATAG TTTGCATGAAGGTACCTTGTCAGTTGCAACGCCTCAATCACCTGAAAGTGTTTGAATGCA GAATGCTGCAAGTAATAGAGAATAAGGCTCCAAATATTTGCAGTTTTGATTTTGGAGGTA AACACGTACAACTCTTGCTTGGTGAATCGTTGCAGATGAAGACACTATCTTTGCAATACT ATTGCAACGCTGTCTATTATGCTCGTGTAGAGTCTATACCCAATGTGCCAAATCTTGAAA CTCTCACCATTTGCTCGTATCACGAGATGGTTAACACACCAATGTTGCCTAGCAAATTCC TCCATCTCAAGTGTTTGACTATCGATCTTGCTGAAGTTTCCCATGCATATGATTATTTCT CTCTAGTTTCTTTTCTTGATGCTTCTCCTTTCTTGGAGACTTTACTTCTGGGTGTAAGAT AATTTTCATTCTGCAAAGTTATCTAGTGTCTATGGTAGTAACCATCAATTAAAGTATATT TGGCTTTTCATCTCCAGATACCAAAGGACAGCATGGAGGATGACTCAATTTTTGGAGATT CCTCAAATATGAGGCAGATGCAAGAATATCGTCATGACAACCTCCAGAGTGTGGTGATCA CTTGTTTCTGCTCCGCGAAGAGCTTGATCGAGCTAACATGTTGTATTCTTGACTGTACAA CGTCACTTGAGTACCTTACACTGGATACTACTCGTGGTGTTTATAGCTGTTCTACAGGTA AACACAGCCAATGCTTTCCTATGGACAAGGCCATGATCCCTAAAGCCAACAGGGCTATGT TGGCTGTCGAAACATAAATTGAACGAAAAGTTCCTTCCACAGTTAAGTTAAATGTTGTGA AACCTTGCCCCCTTTAAGGATAATTGAATCTTAGTTGTAA



consensusID : consensus_8716#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence
                              [CAATGCTCAAGGGAAGTTTTTTTAATGGAGACAAATTGGATTTAAAGTCACTAGAGTTTTTTTTTTCAAAAAAATCAGACAAAAGGTAACCAAATTGATTTGTGGTGTGCACTTGTGTGCTTGATTTAATTGTTTGCTTGTATTTGTGTCTGTACATAACCATGCATGATCTATTGTAAATGGTTCAATTGATTCAGTGGCTAAAAGAAAGGGATCACTCTGCCAACAAGTTGCAAATTCTGATGGCGAGAGAAGAACAAGATATTCAGGGCCTAACCTTCCAGAGGACATCTGGTGCCATATACACTC]

[+] EMBL CK085135             [CAATGCTCAAGGGAAGTTTTTTTAATGGAGACAAATTGGATTTAAAGTCACTAGAGTTTTTTTTTTCAAAAAAATCAGACAAAAGGTAACCAAATTGATTTGTGGTGTGCACTTGTGTGCTTGATTTAATTGTTTGCTTGTATTTGTGTCTGTACATAACCATGCATGATCTATTGTAAATGGTTCAATTGATTCAGTGGCTAAAAGAAAGGGATCACTCTGCCAACAAGTTGCAAATTCTGATGGCGAGAGAAGAACAAGATATTCAGGGCCTAACCTTCCAGAGGACATCTGGTGCCATATACACTC]


>consensus_8716#2 CAATGCTCAAGGGAAGTTTTTTTAATGGAGACAAATTGGATTTAAAGTCACTAGAGTTTT TTTTTTCAAAAAAATCAGACAAAAGGTAACCAAATTGATTTGTGGTGTGCACTTGTGTGC TTGATTTAATTGTTTGCTTGTATTTGTGTCTGTACATAACCATGCATGATCTATTGTAAA TGGTTCAATTGATTCAGTGGCTAAAAGAAAGGGATCACTCTGCCAACAAGTTGCAAATTC TGATGGCGAGAGAAGAACAAGATATTCAGGGCCTAACCTTCCAGAGGACATCTGGTGCCA TATACACTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8716#0      TCGCTCGTTCGATCCGAGCGGGGTATCGTCGTGGTTATGGGGAAGCTGCTGGACCTGAAG 60
consensus_8716#1      ------------------------------------------------------------
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      CGGCTCATGTCCGTGCCGAAGGAGCGGAATCGTCGTCGGCGGTAGCGGCAAATCCGAGCC 120
consensus_8716#1      ------------------------------------------------------------
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      CGCAATGGTTCAATTGATTCAGTGGCTAAAAGAAAGGGATCACTCTGCCAACAAGTTGCA 180
consensus_8716#1      -------GTTCCATTGATTCAGCGGCTAAAAGAAAGGGATCACTCTGTCAACAAGTTGCA 53
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      AATTCTGATGGCGAGAGAAGAACAAGATATTCAGGGCCTAACCTTCCAGAGGACATCTGG 240
consensus_8716#1      AATTCTGAAGGCAACAAAAAAACAACATATTCAGGGCTAGACCTTCCAGAGGAAATCTGG 113
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      TGCCATATACACTCCCTGATGCCATTCAAAGATGCTGCCCGTGCTGCATGTGTGTCTCAT 300
consensus_8716#1      TGCCATATACACTCCCTAATGGCATTCAAAGATGCCGCCCGTGCTACATGTGTGTCTCGT 173
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      GCTTTTCGTCGTTCCTGGCAACACCGCCCCAATCTTATATTTTGTATTGGAACACTGGGG 360
consensus_8716#1      GCTTTTCATCGTTCCTGGCAATGCCATCCCAATCTTATATTTTGTATTGGAATACTGGGC 233
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      TTGGATTTCATCAACAAAATTGATCGTATTATAAAAAACCACTCAGGCATTGGCATCAAA 420
consensus_8716#1      TCGGATTTCATCAACAAATTTGATCGCATTGTGAAAAACCACTCAGGCATTGGCATCAAG 293
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      TCGCTACAGTTAGAATATGATACTTTTTGCAATGCTAGAAGGAGCGCTAGCATCAGCTAT 480
consensus_8716#1      TCGGTAAACTTTGAATATGATAGTTCTTACAATACTAGAAGGAGCACTAGCATCAGCCAT 353
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      CATCTCAATAATTGGCTTCAGATTGCTGTTACACCATGGATTGAAGAACTAATCCTTACA 540
consensus_8716#1      CATTTTGATAGTTGGCTTCATATTGCTATTACACCATGGATCGAAAAACTCTCCCTTAGG 413
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      CTGTCGCTATCTTCATACAATGTGGATTACAATTTCCCGTGCTCACTTTTATCTGATGGG 600
consensus_8716#1      CTATCTCATTATTCATAAAATGTGGAGTACAACTTACCATGCACAATTCTGTCTGATGGG 473
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      AGAGGAAGTTCATTGCGACATCTTTATCTTGGCAGTTGTTTCTTTCATCCTACAGTTAAT 660
consensus_8716#1      AGAGCAAGCTCAATGCGACATCTTTATCTTGGCAGTTGTAGCTTCCATCCCACAATCAAC 533
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      CTTGAATTGAGAAACCTGACGAGGTTGCATCTGGTTACTGTACATATTACAGGAGATGAG 720
consensus_8716#1      CTTGACTTGAGAAGCCTGATGAAGTTGCATCTGTTTAATGTCCATATTACAGGAGATGAG 593
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      TTTGGGTGCCTTCTTTCGAATTCTTATGCTTTGGAGCGATTGGAACTTAAATATTGTTAT 780
consensus_8716#1      TTAGGGTGCCTTCTCTTCAGTTGTTATGCTTTGGAGTGGTTGGAACTTGAGCATTGTGAT 653
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      GGAATAATTTGTCTGAAGATACCTTGCCTGTTGCAACGCCTTAGCCACCTGGAAGTGTTT 840
consensus_8716#1      GAAATAGTTTGCATGAAGGTACCTTGTCAGTTGCAACGCCTCAATCACCTGAAAGTGTTT 713
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      GAATGCAGAATGCTGCAAGCCATAGAGAATAAGGCTCCAAATCTTTGCAGTTTTGACCTT 900
consensus_8716#1      GAATGCAGAATGCTGCAAGTAATAGAGAATAAGGCTCCAAATATTTGCAGTTTTGATTTT 773
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      GGAGCTAGGCAGGTACGGCTCTTGCTTGGTGAATCATTGCAAATGAAAACACTATCCTTG 960
consensus_8716#1      GGAGGTAAACACGTACAACTCTTGCTTGGTGAATCGTTGCAGATGAAGACACTATCTTTG 833
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      GA---CTATCCTAGTGCCGTCTATTATGCTCGTGCAGAGCTTCCATCCAATGTGCCAAAT 1017
consensus_8716#1      CAATACTATTGCAACGCTGTCTATTATGCTCGTGTAGAGTCTATACCCAATGTGCCAAAT 893
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      CTTGAAATTCTCACCATTTGCTCGGATCACGAGATGGTTGATACACCAATGTTGCCTAGC 1077
consensus_8716#1      CTTGAAACTCTCACCATTTGCTCGTATCACGAGATGGTTAACACACCAATGTTGCCTAGC 953
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      AAATTTTTCTATCTCAAGTGCTTGACTATTGATCTTGCTTGGAGACTTTCCCCAGCCTAT 1137
consensus_8716#1      AAATTCCTCCATCTCAAGTGTTTGACTATCGATCTTGCT---GAAGTTTCCCATGCATAT 1010
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      GATTATTTCTCTCTGATTTCTTTTCTTGACGCTTCTCCTTCCTTGGAGACTTT------- 1190
consensus_8716#1      GATTATTTCTCTCTAGTTTCTTTTCTTGATGCTTCTCCTTTCTTGGAGACTTTACTTCTG 1070
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      ----------------------------TTGTCTAG------------------------ 1198
consensus_8716#1      GGTGTAAGATAATTTTCATTCTGCAAAGTTATCTAGTGTCTATGGTAGTAACCATCAATT 1130
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      ----------------------------------AGGACCGAA-TGGAGAATGAATTGAT 1223
consensus_8716#1      AAAGTATATTTGGCTTTTCATCTCCAGATACCAAAGGACAGCA-TGGAGGATGACTCAAT 1189
consensus_8716#2      --------------------------------------CAATGCTCAAGGGAAGTTTTTT 22
                                                            *     *  **      *   *

consensus_8716#0      TATTGGAGATATGTCACATATGAGGCAAATGCTAGAACACCGTCATGACAACCTCCAGAG 1283
consensus_8716#1      TTTTGGAGATTCCTCAAATATGAGGCAGATGCAAGAATATCGTCATGACAACCTCCAGAG 1249
consensus_8716#2      TAATGGAGACAAATTGGATTTAAAGTCACTA-GAGTTTTTTTTTTCAAAAAAATCAGACA 81
                      *  ******    *   ** * * *    *   **       *    * **  **     

consensus_8716#0      CGTGGAGATTA--TTGGCTTTTGCTATACA---AAGAGCTTGATCGAGCTAACATGTCAT 1338
consensus_8716#1      TGTGGTGATCA--CTTGTTTCTGCTCCGCG---AAGAGCTTGATCGAGCTAACATGTTGT 1304
consensus_8716#2      AAAGGTAACCAAATTGATTTGTGGTGTGCACTTGTGTGCTTGATTTAATTGTTTGCTTGT 141
                         **  *  *   *   ** ** *   *      * *******  *  *      *  *

consensus_8716#0      ATTCTTGACAATACAACGTCGCTTAAGCACCTTAAACTGGATACTACTCGTGATGTTTTT 1398
consensus_8716#1      ATTCTTGACTGTACAACGTCACTTGAGTACCTTACACTGGATACTACTCGTGGTGTTTAT 1364
consensus_8716#2      ATTTGTGTCTGTACATAACCA--TGCATGATCTATTGTAAATGGTTCAATTGAT-TCAGT 198
                      ***  ** *  ****    *   *        **   *  **  * *   ** * *   *

consensus_8716#0      AGCTGTTCTACAGGCAAACACGACAAATGCTTCCATATGGGTAAGGATATGCTCACCGAA 1458
consensus_8716#1      AGCTGTTCTACAGGTAAACACAGCCAATGCTTTCCTATGGACAAGGCCATGATCCCTAAA 1424
consensus_8716#2      GGCT-------AAAAGAAAGGGATCACTCTGCCAACAAGTTGCAAATTCTGATGGCGAGA 251
                       ***       *    **       * *        * *    *     ** *  *   *

consensus_8716#0      GCCAAGAAAGCAGTTTTGGCAATTGAAACTTACATCGAGCCAAAAGTTCCCTCCACTGTC 1518
consensus_8716#1      GCCAACAGGGCTATGTTGGCTGTCGAAACATAAATTGAACGAAAAGTTCCTTCCACAGTT 1484
consensus_8716#2      G--AAGAACAAGATATTCAGGGCCTAACCTTCCAGAGGACATCTGGTGCCATATACACTC 309
                      *  ** *      * **        ** * *  *  *  *     ** ** *  **  * 

consensus_8716#0      ATGCTAAATGTTGTGAAACCTTGCAACCGTTGCCATGTTGCTGAATCTTAGTTCTATTTT 1578
consensus_8716#1      AAGTTAAATGTTGTGAAACCTTGCCCCCTTTAA-GGATAATTGAATCTTAGTTGTAA--- 1540
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      TTTCCTAACATAATTCCTATGTAGATGATTATGGAGTTTTTTAACTGATCATGTTTTCTG 1638
consensus_8716#1      ------------------------------------------------------------
consensus_8716#2      ------------------------------------------------------------
                                                                                  

consensus_8716#0      TCTTCACACAACTGAATTACGAGTCACATCCAATTGA 1675
consensus_8716#1      -------------------------------------
consensus_8716#2      -------------------------------------
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)