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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1939 fasta sequence
[ATCCCCAATCCCCAATCGATCAATCCTCACTTCCCCAGCCAGCCCGTCTGCGGAGAAATCGATCCCGCACTTCCTGCAGCCGCCGCCGATCCCGCATCGCTCCACCGGCTACTGCCTTTTCTCATCTCCAACCTTCGCTCTTCCCCCACAATTTCTGCCTGTCTACGGCTGTGGGGTTGCCTGCTGCTGGTTGTCGTTCAGCGTCCATCGGGCAGGCAGCAGCGTTCCAGTGGATCTCATTGACGCCGGCCACAACGCCCGGTTCAACACCGCATTCCCCTTGGCTCACCCTCTCCGGCGATGAGCTCGAGCGGGCGAGGCGGCAAGCGGCAAGGGGCGCCGCCCCCAGCGCCATTCGGGGCTGCGGCGAAGAGGGCCCAACCCCACGGTGGGCACCTAGCAGATGACTCCATCCGCGCTAGCGGTGACCTCTCATCTCCTATCGGTTCAGCGCCTAACGGTCGCTGCCTCCTCTTCCACAGGTGTTTTTCAGGAACATCAAATTTATGTATGCTTTTGTTATGCTCGATGAAATGGATGAATCGGCTGTACATAATTTGTCAGCTCGCTGCCACACTATGATCAGCAAAGGCGCAAGTTGATCCAATTTCCATCTGCATCTGGTCCTTGGTCTCTGATCAGTTATCAATTTGCAAGAGTGCTTGATTTTCCAAGTTTCGATACCGGACAATCTTCCTTGCTATGACAACTAAGATGTTCTTTCTGTACATCTATGTTCTCCCACTGTACTTTAGTTCGTTGTTAGTTGAGTTAGATTTAGTGTGAAGCAAATAGACCCGACTCTCTGTAAAGTTAGTATTGTATATGATTTCCTGTTTTTAGGGCATTCAGCAAGTGCTTAT-GGTTAAGAACTACACTACATTACAAAGTTGCCAAGAAAATGC-AAGGTGACAATATCTTGTGGCCATCAAAAATTGAGATTTTCAGTGACTGTCAATTTTTTCTTGTGTTCTACAGTGTGCTACATTGCTCAGGACTGCCTCAGGTAAATAGAAAACTATAATATAGCGCAATATCGTCTTACGTTTCCCATGAGGCCATGACTGTTTTCTGCATGATCTGCTGCTACCTACCGGGCAAGCACTGGTGTTATGTTTTGGACTGACCATTTGTAAATCTATTTAACCTTTAATATGTACTAAAAGAGAGGATTCTTCAGCGGTGTTTTACTGTACATCTGTATTAATATATTTCTTTGTGCATAGCATTTCAGGCCAGGGACAGGCTGCCCAGGACGAGTGGAAATAATTATGTAATATTTGCTAGGTATTACTTCCTACTCTTACTTCTACGCTTCTCGCTTCATTTCAGTTGAAGCCATCAAGACATTGTCCAGACCGAAATCATATATTGTTATTATCCAGTAGATTATCAAGATTACTGTCTGTTTTAGTTCAAGATGTTCCCTGAATAGCAGAACTGGATGGTAGCTGACAGATTCGGTAAAGTTCAATACTCTAATCAAAACTGGATATGGACATCATTTAGATCAAGTTGCTTTCTAGGTTCAGGAGATCAAGCTGGGTGAGAACATCAGAGTATAATGGTTGTGATGGTGAGAGCACCATAGTATGGTGGATAGGGCTAGGTGAGGTTTGTACAATTCATTCTACGATGCATATCTTGCAGTTGGGAGTCATGATCTTTCTTTCAAATAAGTATCATTGCTTATCGCAAAAAAAAAAATGCAGTGTTTATTGCCAAATCCTGACATGAAAAGGGTGAAGAGAATTTTGGTAATATAGTTGTAAGCAACATAGTGAGAAGCACTTTATTAAGTTAAAAGGATCGCTCTACATTGGATTGAGTTTGATGTTAGAATTTTGTACCAATCTTTCTCTGTTAAAATTTCCATCCTCATTGGCTAATAAAAAGAAGATAGTCTGATTTGGGACAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK071099 [ATCCCCAATCCCCAATCGATCAATCCTCACTTCCCCAGCCAGCCCGTCTGCGGAGAAATCGATCCCGCACTTCCTGCAGCCGCCGCCGATCCCGCATCGCTCCACCGGCTACTGCCTTTTCTCATCTCCAACCTTCGCTCTTCCCCCACAATTTCTGCCTGTCTACGGCTGTGGGGTTGCCTGCTGCTGGTTGTCGTTCAGCGTCCATCGGGCAGGCAGCAGCGTTCCAGTGGATCTCATTGACGCCGGCCACAACGCCCGGTTCAACACCGCATTCCCCTTGGCTCACCCTCTCCGGCGATGAGCTCGAGCGGGCGAGGCGGCAAGCGGCAAGGGGCGCCGCCCCCAGCGCCATTCGGGGCTGCGGCGAAGAGGGCCCAACCCCACGGTGGGCACCTAGCAGATGACTCCATCCGCGCTAGCGGTGACCTCTCATCTCCTATCGGTTCAGCGCCTAACGGTCGCTGCCTCCTCTTCCACAGGTGTTTTTCAGGAACATCAAATTTATGTATGCTTTTGTTATGCTCGATGAAATGGATGAATCGGCTGTACATGATTTGTCAGCTCGCTGCCACACTATGATCAGCAAAGGCGCAAGTTGATCCAATTTCCATCTGCATCTGGTCCTTGGTCTCTGATCAGTTATCAATTTGCAAGAGTGCTTGATTTTCCAAGTTTCGATACCGGACAATCTTCCTTGCTATGACAACTAAGATGTTCTTTCTGTACATCTATGTTCTCCCACTGTACTTTAGTTCGTTGTTAGTTGAGTTAGATTTAGTGTGAAGCAAATAGACCCGACTCTCTGTAAAGTTAGTATTGTATATGATTTCCTGTTTTTAGGGCATTCAGCAAGTGCTTAT GGTTAAGAACTACACTACATTACAAAGTTGCCAAGAAAATGC AAGGTGACAATATCTTGTGGCCATCAAAAATTGAGATTTTCAGTGACTGTCAATTTTTTCTTGTGTTCTACAGTGTGCTACATTGCTCAGGACTGCCTCAGGTAAATAGAAAACTATAATATAGCGCAATATCGTCTTACGTTTCCCATGAGGCCATGACTGTTTTCTGCATGATCTGCTGCTACCTACCGGGCAAGCACTGGTGTTATGTTTTGGACTGACCATTTGTAAATCTATTTAACCTTTAATATGTACTAAAAGAGAGGATTCTTCAGCGGTGTTTTACTGTACATCTGTATTAATATATTTCTTTGTGCATAGCATTTCAGGCCAGGGACAGGCTGCCCAGGACGAGTGGAAATAATTATGTAATATTTGCTAGGTATTACTTCCTACTCTTACTTCTACGCTTCTCGCTTCATTTCAGTTGAAGCCATCAAGACATTGTCCAGACCGAAATCATATATTGTTATTATCCAGTAGATTATCAAGATTACTGTCTGTTTTAGTTCAAGATGTTCCCTGAATAGCAGAACTGGATGGTAGCTGACAGATTCGGTAAAGTTCAATACTCTAATCAAAACTGGATATGGACATCATTTAGATCAAGTTGCTTTCTAGGTTCAGGAGATCAAGCTGGGTGAGAACATCAGAGTATAATGGTTGTGATGGTGAGAGCACCATAGTATGGTGGATAGGGCTAGGTGAGGTTTGTACAATTCATTCTACGATGCATATCTTGCAGTTGGGAGTCATGA ]
[+] EMBL OSS4835A [ TGGATGAATCGGCTGTACATAATTTGTCAGCTCGCTGCCACACTATGATCAGCAAAGGCGCAAGTTGATCCAATTTCCATCTGCATCTGGTCCTTGGTCTCTGATCAGTTATCAATTTGCAAGAGTGCTTGATTTTCCAAGTTTCGATACCGGACAATCTTCCTTGCTATGACAACTAAGATGTTCTTTCTGTACATCTATGTTCTCCCACTGTACTTTAGTTCGTTGTTAGTTGAGTTAGATTTAGTGTGAAGCAAATAGACCCGACTCTCTGTAAAGTTAGTATTGTATATGATTTCCTGTTTTTAGGGCATTCAGCAAGTGCTTATGGGTTAAGAACTACACTACATTACAAAGTTGCCAAGAAAATGCAAAGGTGACAATATCTTGTGGCCATCAAAAATTGNGATTTTCAGT ]
[+] EMBL AU089735 [ GGATGAATCGGCTGTACATAATTTGTCAGCTCGCTGCCACACTATGATCAGCAAAGGCGCAAGTTGATCCAATTTCCATCTGCATCTGGTCCTTGGTCTCTGATCAGTTATCAATTTGCAAGAGTGCTTGATTTTCCAAGTTTCGATACCGGACAATCTTCCTTGCTATGACAACTAAGATGTTCTTTCTGTACATCTATGTTCTCCCACTGTACTTTAGTTCGTTGTTAGTTGAGTTAGATTTAGTGTGAAGCAAATAGACCCGACTCTCTGTAAAGTTAGTATTG TATGATTTCCTGTTTTTAGGGCATTCAGCAAGTGCTTAT GGTTAAGAACTACACTACATTACAAAGTTGCCAAGAAAATGC AAGGTGACAATATCTTGTGGCCATCAAAAATTGAGATTTTCAGTGACTGNCAATTTTTTCTTGNGTTCTACAGTGTGCT ]
[+] EMBL AU102003 [ CCCAGGACGAGTGGAAATAATTATGTAATATTTGCTAGGTATTACTTCCTACTCTTACTTCTACGCTTCTCGCTTCATTTCAGTTGAAGCCATCAAGACATTGTCCAGACCGAAATCATATATTGTTATTATCCNGTAGATTATCAAGATTACTGTCTGTTTTAGTTCAAGATGTTCCCTGAATAGCAGAACTGGATGGTAGCTGACAGATTCGGTAAAGTTCAATACTCTAATCAAAACTGGATATGGACATCATTTAGATCAAGTTGCTTTCTAGGTTCAGGAGATCAAGCTGGGTGAGAACATCAGAGTATAATGGTTGTGATGGTGAGAGCNCCATAGTNTGGTGGATAGGGCTAGGTGAGGTTTGTACAATTCATTCTACGATGCATATCTTGCAGTTGGGAGTCATGATCTTTCTTTCAAATAAGTATCATTGCTTATCGCAAAAAAAAAAATGCAGTGTTTATTGCCAAATCCTGACATGAAAAGGGTGAAGAGAATTTTGGTAATATAGTTGTAAGCAACATAGTGAGAAGCACTTTATTAAGTTAAAAGGATCGCTCTACATTGGATTGAGTTTGATGTTAGAATTTTGTACCAATCTTTCTCTGTTAAAATTTCCATCCTCATTGGCTAATAAAAAGAAGATAGTCTGATTTGGGACAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 849 fasta sequence
[CTCACTTCCCCAGCCAGCCCGTCTGCGGAGAAATCGATCCCGCACTTCCTGCAGCCGCCGCCTATCCCGCATCGCTCCACCGGCTACTGCCTTTTCTCATCTCCAACCTTCGCTCTTCCCCCACAATTTCTGCCTGTCTACGGCTGTGGGGTTGCCTGCTGCTGGTTGTCGTTCAGCGTCCATCGGGCAGGCAGCAGCGTTCCAGTGGATCTCATTGACGCCGGCCACAACGCCCGGTTCAACACCGCATTCCCCTTGGCTCACCCTCTCCGGCGATGAGCTCGAGCGGGCGAGGCGGCAAGCGGCAAGGGGCGCCGCCCCCAGCGCCATTCGGGGCTGCGGCGAAGAGGGCCCAACCCCACGGTGGGCACCTAGCAGATGACTCCATCCGCGCTAGCGGTGACCTCTCATCTCCTATCGGTTCAGCGCCTAACGGTCGCTGCCTCCTCTTCCACAGCTCGCTGCCACACTATGATCAGCAAAGGCGCAAGTTGATCCAATTTCCATCTGCATCTGGTCCTTGGTCTCTGATCAGTTATCAATTTGCAAGAGTGCTTGATTTTCCAAGTTTCGATACCGGACAATCTTCCTTGCTATGACAACTAAGATGTTCTTTCTGTACATCTATGTTCTCCCGCTGTACTTTAGTTCGTTGTTAGTTGAGTTAGATTTAGTGTGAAGCAAATAGACCCGACTCTCTGTAAAGTTAGTATTGTATATGACTTCCTGTTTTTAGGGCATTCAGCAAGTGCTTATGGTTAAGAACTACACTACATTACAAAGTTGCCAAGAAAATGCAAGGTGACAATATCTTGTGGCCATCAAAAATTGAGATTTTCAGTGACTGTC]
[+] EMBL AK069973 [CTCACTTCCCCAGCCAGCCCGTCTGCGGAGAAATCGATCCCGCACTTCCTGCAGCCGCCGCCTATCCCGCATCGCTCCACCGGCTACTGCCTTTTCTCATCTCCAACCTTCGCTCTTCCCCCACAATTTCTGCCTGTCTACGGCTGTGGGGTTGCCTGCTGCTGGTTGTCGTTCAGCGTCCATCGGGCAGGCAGCAGCGTTCCAGTGGATCTCATTGACGCCGGCCACAACGCCCGGTTCAACACCGCATTCCCCTTGGCTCACCCTCTCCGGCGATGAGCTCGAGCGGGCGAGGCGGCAAGCGGCAAGGGGCGCCGCCCCCAGCGCCATTCGGGGCTGCGGCGAAGAGGGCCCAACCCCACGGTGGGCACCTAGCAGATGACTCCATCCGCGCTAGCGGTGACCTCTCATCTCCTATCGGTTCAGCGCCTAACGGTCGCTGCCTCCTCTTCCACAGCTCGCTGCCACACTATGATCAGCAAAGGCGCAAGTTGATCCAATTTCCATCTGCATCTGGTCCTTGGTCTCTGATCAGTTATCAATTTGCAAGAGTGCTTGATTTTCCAAGTTTCGATACCGGACAATCTTCCTTGCTATGACAACTAAGATGTTCTTTCTGTACATCTATGTTCTCCCGCTGTACTTTAGTTCGTTGTTAGTTGAGTTAGATTTAGTGTGAAGCAAATAGACCCGACTCTCTGTAAAGTTAGTATTGTATATGACTTCCTGTTTTTAGGGCATTCAGCAAGTGCTTATGGTTAAGAACTACACTACATTACAAAGTTGCCAAGAAAATGCAAGGTGACAATATCTTGTGGCCATCAAAAATTGAGATTTTCAGTGACTGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8722#0 ATCCCCAATCCCCAATCGATCAATCCTCACTTCCCCAGCCAGCCCGTCTGCGGAGAAATC 60
consensus_8722#1 -------------------------CTCACTTCCCCAGCCAGCCCGTCTGCGGAGAAATC 35
***********************************
consensus_8722#0 GATCCCGCACTTCCTGCAGCCGCCGCCGATCCCGCATCGCTCCACCGGCTACTGCCTTTT 120
consensus_8722#1 GATCCCGCACTTCCTGCAGCCGCCGCCTATCCCGCATCGCTCCACCGGCTACTGCCTTTT 95
*************************** ********************************
consensus_8722#0 CTCATCTCCAACCTTCGCTCTTCCCCCACAATTTCTGCCTGTCTACGGCTGTGGGGTTGC 180
consensus_8722#1 CTCATCTCCAACCTTCGCTCTTCCCCCACAATTTCTGCCTGTCTACGGCTGTGGGGTTGC 155
************************************************************
consensus_8722#0 CTGCTGCTGGTTGTCGTTCAGCGTCCATCGGGCAGGCAGCAGCGTTCCAGTGGATCTCAT 240
consensus_8722#1 CTGCTGCTGGTTGTCGTTCAGCGTCCATCGGGCAGGCAGCAGCGTTCCAGTGGATCTCAT 215
************************************************************
consensus_8722#0 TGACGCCGGCCACAACGCCCGGTTCAACACCGCATTCCCCTTGGCTCACCCTCTCCGGCG 300
consensus_8722#1 TGACGCCGGCCACAACGCCCGGTTCAACACCGCATTCCCCTTGGCTCACCCTCTCCGGCG 275
************************************************************
consensus_8722#0 ATGAGCTCGAGCGGGCGAGGCGGCAAGCGGCAAGGGGCGCCGCCCCCAGCGCCATTCGGG 360
consensus_8722#1 ATGAGCTCGAGCGGGCGAGGCGGCAAGCGGCAAGGGGCGCCGCCCCCAGCGCCATTCGGG 335
************************************************************
consensus_8722#0 GCTGCGGCGAAGAGGGCCCAACCCCACGGTGGGCACCTAGCAGATGACTCCATCCGCGCT 420
consensus_8722#1 GCTGCGGCGAAGAGGGCCCAACCCCACGGTGGGCACCTAGCAGATGACTCCATCCGCGCT 395
************************************************************
consensus_8722#0 AGCGGTGACCTCTCATCTCCTATCGGTTCAGCGCCTAACGGTCGCTGCCTCCTCTTCCAC 480
consensus_8722#1 AGCGGTGACCTCTCATCTCCTATCGGTTCAGCGCCTAACGGTCGCTGCCTCCTCTTCCAC 455
************************************************************
consensus_8722#0 AGGTGTTTTTCAGGAACATCAAATTTATGTATGCTTTTGTTATGCTCGATGAAATGGATG 540
consensus_8722#1 AG---------------------------------------------------------- 457
**
consensus_8722#0 AATCGGCTGTACATAATTTGTCAGCTCGCTGCCACACTATGATCAGCAAAGGCGCAAGTT 600
consensus_8722#1 ------------------------CTCGCTGCCACACTATGATCAGCAAAGGCGCAAGTT 493
************************************
consensus_8722#0 GATCCAATTTCCATCTGCATCTGGTCCTTGGTCTCTGATCAGTTATCAATTTGCAAGAGT 660
consensus_8722#1 GATCCAATTTCCATCTGCATCTGGTCCTTGGTCTCTGATCAGTTATCAATTTGCAAGAGT 553
************************************************************
consensus_8722#0 GCTTGATTTTCCAAGTTTCGATACCGGACAATCTTCCTTGCTATGACAACTAAGATGTTC 720
consensus_8722#1 GCTTGATTTTCCAAGTTTCGATACCGGACAATCTTCCTTGCTATGACAACTAAGATGTTC 613
************************************************************
consensus_8722#0 TTTCTGTACATCTATGTTCTCCCACTGTACTTTAGTTCGTTGTTAGTTGAGTTAGATTTA 780
consensus_8722#1 TTTCTGTACATCTATGTTCTCCCGCTGTACTTTAGTTCGTTGTTAGTTGAGTTAGATTTA 673
*********************** ************************************
consensus_8722#0 GTGTGAAGCAAATAGACCCGACTCTCTGTAAAGTTAGTATTGTATATGATTTCCTGTTTT 840
consensus_8722#1 GTGTGAAGCAAATAGACCCGACTCTCTGTAAAGTTAGTATTGTATATGACTTCCTGTTTT 733
************************************************* **********
consensus_8722#0 TAGGGCATTCAGCAAGTGCTTATGGTTAAGAACTACACTACATTACAAAGTTGCCAAGAA 900
consensus_8722#1 TAGGGCATTCAGCAAGTGCTTATGGTTAAGAACTACACTACATTACAAAGTTGCCAAGAA 793
************************************************************
consensus_8722#0 AATGCAAGGTGACAATATCTTGTGGCCATCAAAAATTGAGATTTTCAGTGACTGTCAATT 960
consensus_8722#1 AATGCAAGGTGACAATATCTTGTGGCCATCAAAAATTGAGATTTTCAGTGACTGTC---- 849
********************************************************
consensus_8722#0 TTTTCTTGTGTTCTACAGTGTGCTACATTGCTCAGGACTGCCTCAGGTAAATAGAAAACT 1020
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 ATAATATAGCGCAATATCGTCTTACGTTTCCCATGAGGCCATGACTGTTTTCTGCATGAT 1080
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 CTGCTGCTACCTACCGGGCAAGCACTGGTGTTATGTTTTGGACTGACCATTTGTAAATCT 1140
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 ATTTAACCTTTAATATGTACTAAAAGAGAGGATTCTTCAGCGGTGTTTTACTGTACATCT 1200
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 GTATTAATATATTTCTTTGTGCATAGCATTTCAGGCCAGGGACAGGCTGCCCAGGACGAG 1260
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 TGGAAATAATTATGTAATATTTGCTAGGTATTACTTCCTACTCTTACTTCTACGCTTCTC 1320
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 GCTTCATTTCAGTTGAAGCCATCAAGACATTGTCCAGACCGAAATCATATATTGTTATTA 1380
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 TCCAGTAGATTATCAAGATTACTGTCTGTTTTAGTTCAAGATGTTCCCTGAATAGCAGAA 1440
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 CTGGATGGTAGCTGACAGATTCGGTAAAGTTCAATACTCTAATCAAAACTGGATATGGAC 1500
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 ATCATTTAGATCAAGTTGCTTTCTAGGTTCAGGAGATCAAGCTGGGTGAGAACATCAGAG 1560
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 TATAATGGTTGTGATGGTGAGAGCACCATAGTATGGTGGATAGGGCTAGGTGAGGTTTGT 1620
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 ACAATTCATTCTACGATGCATATCTTGCAGTTGGGAGTCATGATCTTTCTTTCAAATAAG 1680
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 TATCATTGCTTATCGCAAAAAAAAAAATGCAGTGTTTATTGCCAAATCCTGACATGAAAA 1740
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 GGGTGAAGAGAATTTTGGTAATATAGTTGTAAGCAACATAGTGAGAAGCACTTTATTAAG 1800
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 TTAAAAGGATCGCTCTACATTGGATTGAGTTTGATGTTAGAATTTTGTACCAATCTTTCT 1860
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 CTGTTAAAATTTCCATCCTCATTGGCTAATAAAAAGAAGATAGTCTGATTTGGGACAAAA 1920
consensus_8722#1 ------------------------------------------------------------
consensus_8722#0 AAAAAAAAAAAAAAAAAAA 1939
consensus_8722#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||