cluster # 8727

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Oryza sativa
cluster # 8727 cluster # 8727 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8727#0 length = 468 sequences # 4

consensus_8727#1 length = 288 sequences # 1

consensusID : consensus_8727#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 468
fasta sequence

                              [TCCATCGAGGCCGGCGGCGACAACTTCCAGCACTACAGGAAGGGCGTGTACGACGGGCCGTGCGGGACGCGGCTCAACCACGGCGTCACCGTCGTCGGCTACGGCCAGGAGGAGGCGGCGGCGGACGGCGGCGCCGCCGGCGGCGACAAGTACTGGATCATCAAGAACTCGTGGGGGAAGAACTGGGGCGACCAGGGATACATCAAGATGAAGAAGGACGTCGCCGGCAAGCCGGAGGGGCTCTGCGGCATCGCCATCCGGCCGTCATTCCCGCTCATGTGATCTCTACATTTTTCTAAGTTAGTAGCTTTCAAATTAGTCAAACTTAGGAAATTTGGGATGGTGTTCATCGCGTGCACGATGCACCTACACACACTACGCTGTTAATATTACGTGTAAAACTCGCGAATCACATGATTGTTTATTACAATTGGAAATAAATTTATATACAAAGGATAGAAATTTCTT]

[+] EMBL AK108733             [TCCATCGAGGCCGGCGGCGACAACTTCCAGCACTACAGGAAGGGCGTGTACGACGGGCCGTGCGGGACGCGGCTCAACCACGGCGTCACCGTCGTCGGCTACGGCCAGGAGGAGGCGGCGGCGGACGGCGGCGCCGCCGGCGGCGACAAGTACTGGATCATCAAGAACTCGTGGGGGAAGAACTGGGGCGACCAGGGATACATCAAGATGAAGAAGGACGTCGCCGGCAAGCCGGAGGGGCTCTGCGGCATCGCCATCCGGCCGTCATTCCCGCTCATGTGATCTCTACATTTTTCTAAGTTAGTAGCTTTCAAATTAGTCAAACTTAGGAAATTTGGGATGGTGTTCATCGCGTGCACGATGCACCTACACACACTACGCTGTTAATATTACGTGTAAAACTCGCGAATCACATGATTGTTTATTACAATTGGAAATAAATTTATATACAAAGGATAGAAATTTCTT]
[-] EMBL CB650323             [ CCATCGAGGCCGGCGGCGACAACTTCCAGCACTACAGGAAGGGCGTGTACGACGGGCCGTGCGGGACGCGGCTCAACCACGGCGTCACCGTCGTCGGCTACGGCCAGGAGGAGGCGGCGGCGGACGGCGGCGCCGCCGGCGGCGACAAGTACTGGATCATCAAGAACTCGTGGGGGAAGAACTGGGGCGACCAGGGATACATCAAGATGAAGAAGGACGTCGCCGGCAAGCCGGAGGGGCTCTGCGGCATCGCCATCCGGCCGTCATTCCCGCTCATGTGATCTCTACATTTTTTTAAGTTAGTAGCTTTCAAATTAGTCAAACTTAGGAAATTTGGGATGGTGTTCATCGCGTGCACGAGGCACCTACACACACTACGCTGTTAATATTACGTGTAAAACTCGCGAATCACATGATTGTTTATTACAATAAGGAATAAATTTATATACAAAGGATAGAAATTTCTT]
[-] EMBL CB645336             [ CCATCGAGGCCGGCGGCGACAACTTCCAGCACTACAGGAAGGGCGTGTACGACGGGCCGTGCGGGACGCGGCTCAACCACGGCGTCACCGTCGTCGGCTACGGCCAGGAGGAGGCGGCGGCGGACGGCGGCGCCGCCGGCGGCGACAAGTACTGGATCATCAAGAACTCGTGGGGGAAGAACTGGGGCGACCAGGGATACATCAAGATGAAGAAGGACGTCGCCGGCAAGCCGGAGGGGCTCTGCGGCATCGCCATCCGGCCGTCATTCCCGCTCATGTGATCTCTACATTTTTCTAAGTTAGTAGCTTTCAAATTAGTCAAACTTAGGAAATTTGGGATGGTGTTCATCGCGTGCACGATGCCCCTACACACACTACGCTGTTAATATTACGTGTAAAACTCGCGAATCACATGATTGTTTATTACAATTGGAAATAGGGGTATATACAAAGGATAGAA       ]
[-] EMBL CB645295             [ CCATCGAGGCCGGCGGCGACAACTTCCAGCACTACAGGAAGGGCGTGTACGACGGGCCGTGCGGGACGCGGCTCAACCACGGCGTCACCGTCGTCGGCTACGGCCAGGAGGAGGCGGCGGCGGACGGCGGCGCCGCCGGCGGCGACAAGTACTGGATCATCAAGAACTCGTGGGGGAAGAACTGGGGCGACCAGGGATACATCAAGATGAAGAAGGACGTCGCCGGCAAGCCGGAGGGGCTCTGCGGCATCGCCATCCGGCCGTCATTCCCGCTCATGTGATCTCTACATTTTTCTAAGTTAGTAGCTTTCAAATTAGTCAAACTTAGGAAATTTGGGATGGTGTTCATCGCGTGCACGATGCACCTACACACACTACGCTGTTAATATTACGTGTAAAACTCGCGAATCACATGATTGTTTATTACAATTGGAAATAAATTTATATACAAAGGATAGA        ]




>consensus_8727#0
TCCATCGAGGCCGGCGGCGACAACTTCCAGCACTACAGGAAGGGCGTGTACGACGGGCCG
TGCGGGACGCGGCTCAACCACGGCGTCACCGTCGTCGGCTACGGCCAGGAGGAGGCGGCG
GCGGACGGCGGCGCCGCCGGCGGCGACAAGTACTGGATCATCAAGAACTCGTGGGGGAAG
AACTGGGGCGACCAGGGATACATCAAGATGAAGAAGGACGTCGCCGGCAAGCCGGAGGGG
CTCTGCGGCATCGCCATCCGGCCGTCATTCCCGCTCATGTGATCTCTACATTTTTCTAAG
TTAGTAGCTTTCAAATTAGTCAAACTTAGGAAATTTGGGATGGTGTTCATCGCGTGCACG
ATGCACCTACACACACTACGCTGTTAATATTACGTGTAAAACTCGCGAATCACATGATTG
TTTATTACAATTGGAAATAAATTTATATACAAAGGATAGAAATTTCTT

consensusID : consensus_8727#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [GTGTTCATCGCGTGCACGATGCACCTACACAGCTACACTACGCTGTTAATATTACGTGTAGAACTCGCGAATCACATGATTGTTTATTACAATTGGAAATAAATATATATATATATATATATATATATATGAGATGTTTTACGGTGTTTGCGAGATACCTAAAGGTACTTAGAGGTGGAACAACGTGCAAGAGATGGAACAAATTTATTGTAACATGATGCAGTGGTGTAATTAACTTGTAAAACATGGGCATTATACTTTAATTGAATACTTACATCCAAAAAAAAA]

[+] EMBL BQ906922             [GTGTTCATCGCGTGCACGATGCACCTACACAGCTACACTACGCTGTTAATATTACGTGTAGAACTCGCGAATCACATGATTGTTTATTACAATTGGAAATAAATATATATATATATATATATATATATATGAGATGTTTTACGGTGTTTGCGAGATACCTAAAGGTACTTAGAGGTGGAACAACGTGCAAGAGATGGAACAAATTTATTGTAACATGATGCAGTGGTGTAATTAACTTGTAAAACATGGGCATTATACTTTAATTGAATACTTACATCCAAAAAAAAA]




>consensus_8727#1
GTGTTCATCGCGTGCACGATGCACCTACACAGCTACACTACGCTGTTAATATTACGTGTA
GAACTCGCGAATCACATGATTGTTTATTACAATTGGAAATAAATATATATATATATATAT
ATATATATATGAGATGTTTTACGGTGTTTGCGAGATACCTAAAGGTACTTAGAGGTGGAA
CAACGTGCAAGAGATGGAACAAATTTATTGTAACATGATGCAGTGGTGTAATTAACTTGT
AAAACATGGGCATTATACTTTAATTGAATACTTACATCCAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8727#0      TCCATCGAGGCCGGCGGCGACAACTTCCAGCACTACAGGAAGGGCGTGTACGACGGGCCG 60
consensus_8727#1      ---------------------------------------------GTGTTCATCG---CG 12
                                                                   **** *  **   **

consensus_8727#0      TGCGGGACGCGGCTCAACCACGGCGTCACCGTCGTCGGCTACGGCCAGGAGGAGGCG-GC 119
consensus_8727#1      TGCACGATGCACCTACACAGCTACACTAC-GCTGTTAA-TATTACGTGTAGAACTCGCGA 70
                      ***  ** **  **  **  *  *   ** *  **    **   *  * ** *  ** * 

consensus_8727#0      GGCGGACGGCGGC--GCCGCCGGCGGCGACAAGTAC---TGGATCATCAAGAACTCGTGG 174
consensus_8727#1      ATCACATGATTGTTTATTACAATTGGAAATAAATATATATATATATATATATATATATAT 130
                        *  * *   *       *    **  * ** **    *  **    *   *    *  

consensus_8727#0      GGGAAGAACTGGGGCGACCA-GGGATACATCAAGAT-----GAAGAAGGACGTCGCCGGC 228
consensus_8727#1      GAGATGTTTTACGGTGTTTGCGAGATACCTAAAGGTACTTAGAGGTGGAACAACGTGCAA 190
                      * ** *   *  ** *     * ***** * *** *     ** *  * **  **     

consensus_8727#0      AAGCCGGAGGGGCTCTGCGGCATCGCCATCCGGCCGTCATTCCCGCTCATGTGATCTCTA 288
consensus_8727#1      GAGATGGAACAAATTTATTGTAACATGATGCAGTGGTGTAATTAACTTGTAAAACATGGG 250
                       **  ***     * *   * * *   ** * *  **        **  *   *  *   

consensus_8727#0      CATTTTTCTA-AGTTAGTAGCTTTCAAATTAGTCAAACTTAGGAAATTTGGGATGGTGTT 347
consensus_8727#1      CATTATACTTTAATTGAATACTTACATCCAAAAAAAAA---------------------- 288
                      **** * **  * **     *** **    *   ***                       

consensus_8727#0      CATCGCGTGCACGATGCACCTACACACACTACGCTGTTAATATTACGTGTAAAACTCGCG 407
consensus_8727#1      ------------------------------------------------------------
                                                                                  

consensus_8727#0      AATCACATGATTGTTTATTACAATTGGAAATAAATTTATATACAAAGGATAGAAATTTCT 467
consensus_8727#1      ------------------------------------------------------------
                                                                                  

consensus_8727#0      T 468
consensus_8727#1      -