|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1890 fasta sequence
[TTCTCCTCCACACCACCGCGCCTCACTAGCCTCGTGCCCTCGTAGCTGCCCTCGCGCGCCACCACCATGCCGTCCGCCATGAACATGATCACCGCCGCCTTCCGCCGATACCTCGGCTGCTTCTCCGCCGGATCAACCCACCGCCGCCGCCGCGGCGCCGCTGAACCCGTCCTCGCCGGCTCACTTACACTTCCCGCCGCCGCCGGCGGTGACAACGCGGCCAGGCGCCTTGATGTCGTCGTCCCCGCCCCCAGCCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTGTCGCGCCTCCCGGTCGCGGACGCCGCCGCTCGCACCGGCGTGCTGTCGTCGTCGCAGTGGAACGGGCTCTGGTCGTCGACGCCGCTCGTGTTCCAGGACTCCGACCTCATCCTCGCCGCGAACTTCACCAGCGTGGCCCCCGTCGCCGCCACCGTGTCCCGCGTCATCGAGAACCACCCGGGCCCCTTCCACACCGTCACCCTGACCAGCTACTTCCCGGAGTCCGAGCGGGACACCTTCGCCGGCTGGATCCGCGCCGTCGCCGCCAAGGGCGTCCGCGACCTCACCCTGCACAACATCCCCTGGTCGGGCCTCCACGTGCTCCCCGCCGACCTCCTCCAGTGCTGCGCCGCCCTGGAGCGCCTCCGCGTCTGCGTCTGGCGGTTCCCGGCCACGGCCGGCGTCCTCCACCCCGGCGGCGGCGACGGCGACGGCGCCGCGCCGCCGTCGTTCCCGCGCCTGAGGGAGCTCGTCCTCAACAGGAGCGCCATCGAGGAGGCCGACCTGGAGAACGTGGTGGCGTGCAGCCCGGCGCTGCGGACGCTGGTGCTCGCCTTCAGCCGTGGCGCGCCGGGGCGCGTCCGCCTCGCCAGCGGCAGCCTCCGGTGCGTCGTGCTGTGCCAGTCGCTGGTGGACGAGCTCGCCGTCGTCGCCGCGCCGCTGCTGGAGCGGATCGTGCTGCGGTGGTGCGCGTCGGGCACCCACCACGGTCACCTCATGAGGATCAGGATCAGCCGGGCCTCGTCGATCAAGGCGATTGGTTACCTCAAACCAACCTGTCATGGCCTGCATATTGATGCCACTGTTATAAAGCCTGGGATAACGGCTAGCCCCGATGAAGTGGCTGTTCCAAGCGTCAAGATATTGGGTTTACAAGTTCGATTTGGAGTTGCTGCGGAAGCAACGATGGTGTCCTGCATGCTCAGATGTTTTCCTAACGTTGAAACGCTGCATATCATGCCTATCGAAGATCCTCAGTCTACCCAGCTTGATGACTTTGAGTTCTGGGAGGAGATCAATTCAGTTGAATGTGTCAGATCCAGCATCAAGAAGGTAGTGTTCCATGGGTTCTCCTGGAAGAATTCTGAGATAGCGTTCATCAATTCCATCGCCGAAGGAGGACTGGTGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCA-GTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGGATTGTGTTTTAAAAA]
[+] EMBL AK107371 [TTCTCCTCCACACCACCGCGCCTCACTAGCCTCGTGCCCTCGTAGCTGCCCTCGCGCGCCACCACCATGCCGTCCGCCATGAACATGATCACCGCCGCCTTCCGCCGATACCTCGGCTGCTTCTCCGCCGGATCAACCCACCGCCGCCGCCGCGGCGCCGCTGAACCCGTCCTCGCCGGCTCACTTACACTTCCCGCCGCCGCCGGCGGTGACAACGCGGCCAGGCGCCTTGATGTCGTCGTCCCCGCCCCCAGCCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTGTCGCGCCTCCCGGTCGCGGACGCCGCCGCTCGCACCGGCGTGCTGTCGTCGTCGCAGTGGAACGGGCTCTGGTCGTCGACGCCGCTCGTGTTCCAGGACTCCGACCTCATCCTCGCCGCGAACTTCACCAGCGTGGCCCCCGTCGCCGCCACCGTGTCCCGCGTCATCGAGAACCACCCGGGCCCCTTCCACACCGTCACCCTGACCAGCTACTTCCCGGAGTCCGAGCGGGACACCTTCGCCGGCTGGATCCGCGCCGTCGCCGCCAAGGGCGTCCGCGACCTCACCCTGCACAACATCCCCTGGTCGGGCCTCCACGTGCTCCCCGCCGACCTCCTCCAGTGCTGCGCCGCCCTGGAGCGCCTCCGCGTCTGCGTCTGGCGGTTCCCGGCCACGGCCGGCGTCCTCCACCCCGGCGGCGGCGACGGCGACGGCGCCGCGCCGCCGTCGTTCCCGCGCCTGAGGGAGCTCGTCCTCAACAGGAGCGCCATCGAGGAGGCCGACCTGGAGAACGTGGTGGCGTGCAGCCCGGCGCTGCGGACGCTGGTGCTCGCCTTCAGCCGTGGCGCGCCGGGGCGCGTCCGCCTCGCCAGCGGCAGCCTCCGGTGCGTCGTGCTGTGCCAGTCGCTGGTGGACGAGCTCGCCGTCGTCGCCGCGCCGCTGCTGGAGCGGATCGTGCTGCGGTGGTGCGCGTCGGGCACCCACCACGGTCACCTCATGAGGATCAGGATCAGCCGGGCCTCGTCGATCAAGGCGATTGGTTACCTCAAACCAACCTGTCATGGCCTGCATATTGATGCCACTGTTATAAAGCCTGGGATAACGGCTAGCCCCGATGAAGTGGCTGTTCCAAGCGTCAAGATATTGGGTTTACAAGTTCGATTTGGAGTTGCTGCGGAAGCAACGATGGTGTCCTGCATGCTCAGATGTTTTCCTAACGTTGAAACGCTGCATATCATGCCTATCGAAGATCCTCAGTCTACCCAGCTTGATGACTTTGAGTTCTGGGAGGAGATCAATTCAGTTGAATGTGTCAGATCCAGCATCAAGAAGGTAGTGTTCCATGGGTTCTCCTGGAAGAATTCTGAGATAGCGTTCATCAATTCCATCGCCGAAGGAGGACTGGTGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCA GTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGG ]
[+] EMBL AU182612 [ TGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCA GTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGGATTGTGTTTTAAAAA]
[+] EMBL AU172719 [ CTGTATCTTCCANAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCANGTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGGATTGTGTTTTAAAAA]
consensusID : consensus_8730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[GNGTCNTNGCGTNTCTCCGGCCGGATCAACCCACCNNCGCCNCCGGCNGACTGAACCCGTCCTCNNCNGCTCACTTACACTTNCCGCCGCCGCCGTGANCAACGCGGCCAGGCGNCTTGATGTCGTCGTCCCCGCCCCCAGNCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTNCTGGCCATGTCCGCTCCGNCATCGTGTCGCGACTCCCGGTCGGGACGCTGCCGNTCGCACCGGGTGCTTGTNGTCGTCGCA]
[+] EMBL OSC767 [GNGTCNTNGCGTNTCTCCGGCCGGATCAACCCACCNNCGCCNCCGGCNGACTGAACCCGTCCTCNNCNGCTCACTTACACTTNCCGCCGCCGCCGTGANCAACGCGGCCAGGCGNCTTGATGTCGTCGTCCCCGCCCCCAGNCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTNCTGGCCATGTCCGCTCCGNCATCGTGTCGCGACTCCCGGTCGGGACGCTGCCGNTCGCACCGGGTGCTTGTNGTCGTCGCA]
consensusID : consensus_8730#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence
[CCCNCCCCCAGCCGCCCTNATGGTTTAACTTTAAGCGGCGAAGATTTAATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTTTCGCGCCTCCCGGTC]
[+] EMBL OSC682 [CCCNCCCCCAGCCGCCCTNATGGTTTAACTTTAAGCGGCGAAGATTTAATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTTTCGCGCCTCCCGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8730#0 TTCTCCTCCACACCACCGCGCCTCACTAGCCTCGTGCCCTCGTAGCTGCCCTCGCGCGCC 60
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 ACCACCATGCCGTCCGCCATGAACATGATCACCGCCGCCTTCCGCCGATACCTCGGCTGC 120
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 -----------------------------------------------GNGTCNTNGCGTN 13
consensus_8730#0 TTCTCCGCCGGATCAACCCACCGCCGCCGCCGCGGCGCCGCTGAACCCGTCCTCGCCGGC 180
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 TCTCCGGCCGGATCAACCCACCNNCGCCNCCGGCNGAC---TGAACCCGTCCTCNNCNGC 70
consensus_8730#0 TCACTTACACTTCCCGCCGCCGCCGGCGGTGACAACGCGGCCAGGCGCCTTGATGTCGTC 240
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 TCACTTACACTTNCCGCCGCCGCCGTGAN---CAACGCGGCCAGGCGNCTTGATGTCGTC 127
consensus_8730#0 GTCCCCGCCCCCAGCCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGC 300
consensus_8730#2 ---CCCNCCCCCAGCCGCCCTNATGGTTTAACTTTAAGCGGCGAAGATTTAATCGGTAGC 57
consensus_8730#1 GTCCCCGCCCCCAGNCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGC 187
*** ******* ****** ***** * *** * ************** *********
consensus_8730#0 CTTCCTGGCCATGTCCGCTCCGCCATCGTGTCGCGCCTCCCGGTCGCGGACGCCGCCGCT 360
consensus_8730#2 CTTCCTGGCCATGTCCGCTCCGCCATCGTTTCGCGCCTCCCGGTC--------------- 102
consensus_8730#1 CTTNCTGGCCATGTCCGCTCCGNCATCGTGTCGCGACTCCCGGTCG-GGACGCTGCCGNT 246
*** ****************** ****** ***** *********
consensus_8730#0 CGCACCGGCGTGCTGTCGTCGTCGCAGTGGAACGGGCTCTGGTCGTCGACGCCGCTCGTG 420
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 CGCACCGGGTGCTTGTNGTCGTCGCA---------------------------------- 272
consensus_8730#0 TTCCAGGACTCCGACCTCATCCTCGCCGCGAACTTCACCAGCGTGGCCCCCGTCGCCGCC 480
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 ACCGTGTCCCGCGTCATCGAGAACCACCCGGGCCCCTTCCACACCGTCACCCTGACCAGC 540
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 TACTTCCCGGAGTCCGAGCGGGACACCTTCGCCGGCTGGATCCGCGCCGTCGCCGCCAAG 600
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GGCGTCCGCGACCTCACCCTGCACAACATCCCCTGGTCGGGCCTCCACGTGCTCCCCGCC 660
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GACCTCCTCCAGTGCTGCGCCGCCCTGGAGCGCCTCCGCGTCTGCGTCTGGCGGTTCCCG 720
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GCCACGGCCGGCGTCCTCCACCCCGGCGGCGGCGACGGCGACGGCGCCGCGCCGCCGTCG 780
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 TTCCCGCGCCTGAGGGAGCTCGTCCTCAACAGGAGCGCCATCGAGGAGGCCGACCTGGAG 840
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 AACGTGGTGGCGTGCAGCCCGGCGCTGCGGACGCTGGTGCTCGCCTTCAGCCGTGGCGCG 900
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 CCGGGGCGCGTCCGCCTCGCCAGCGGCAGCCTCCGGTGCGTCGTGCTGTGCCAGTCGCTG 960
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GTGGACGAGCTCGCCGTCGTCGCCGCGCCGCTGCTGGAGCGGATCGTGCTGCGGTGGTGC 1020
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GCGTCGGGCACCCACCACGGTCACCTCATGAGGATCAGGATCAGCCGGGCCTCGTCGATC 1080
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 AAGGCGATTGGTTACCTCAAACCAACCTGTCATGGCCTGCATATTGATGCCACTGTTATA 1140
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 AAGCCTGGGATAACGGCTAGCCCCGATGAAGTGGCTGTTCCAAGCGTCAAGATATTGGGT 1200
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 TTACAAGTTCGATTTGGAGTTGCTGCGGAAGCAACGATGGTGTCCTGCATGCTCAGATGT 1260
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 TTTCCTAACGTTGAAACGCTGCATATCATGCCTATCGAAGATCCTCAGTCTACCCAGCTT 1320
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GATGACTTTGAGTTCTGGGAGGAGATCAATTCAGTTGAATGTGTCAGATCCAGCATCAAG 1380
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 AAGGTAGTGTTCCATGGGTTCTCCTGGAAGAATTCTGAGATAGCGTTCATCAATTCCATC 1440
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GCCGAAGGAGGACTGGTGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCC 1500
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 CCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTT 1560
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCT 1620
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTT 1680
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGT 1740
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 TGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGT 1800
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GTACCAGTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAAC 1860
consensus_8730#2 ------------------------------------------------------------
consensus_8730#1 ------------------------------------------------------------
consensus_8730#0 GCTTTGTACTGCTGGATTGTGTTTTAAAAA 1890
consensus_8730#2 ------------------------------
consensus_8730#1 ------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||