These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 875 fasta sequence [GGGGGGTTTGACTCGGCCAGAATAAGGGAAGCATTCGCTGAAATTGGACGGCCACCTCCGGAACCAAAGGGGATGATCGACACCTTGCCTCTGCTTACCCAGAAATTTGGGAGGAGAGCAGGGGACATGAAGATGGCAAGCTTGGCAAATTACTTTGGTCTGGGGCGACAAAGTCACAGGAGCCTTGATGATGTTAGGATGAATCTTGAAGTTCTCAAGTATTGTGCTACAGTTCTCTTCTTGGAGGCAAGTCTTCCAGGAGTGCTGACTGTTGAGAACCTGGTGGAGCGTGCAATTACAAGGAGCCAAGCTAATGGAGCTGCTTCTCCTGAGGTGCCAAAACCTGTAGCACGGTCTTCACCTGATTCCTCAAAACGGCAACGAACAATTTCTCGAGTTGACAATGCAATCCAAGCTGGAGATCGATGCAAGTTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTTTCAACTGAGTCCATCCAAATTTCTGTTCCTTCTTCCTACCGATTAACTCGAAAAACTTCTATCAAGCACAAAGGTAGCCCGATCCAACTTTGTTGTGCCGGTCTGCGGATCCAGTTTGGAGTCAGCACAAAGTTCCTAGACAGCGCAGGTCGCCCAAAGNTGAACATACTGGTTGACATCCCTGAGAATCTCAGTAAAATTCTAGAATTCTGTGATGGTATCGCTCAGAAATCATCTCAGGATTCTGGGAGCACTTTCTGAATGGAGACCATTGATTAAAAAATATGGGTATGTGAATCGTCCTACTGTCCGNCTACACATTCCCACTATTGTCAGCGGTGAANCTGCGACCTATGGGAACCGACATATACCAGAAAGAGGCTAGCGGCAACATTCANAANCT] [+] EMBL CA766003 [GGGGGGTTTGACTCGGCCAGAATAAGGGAAGCATTCGCTGAAATTGGACGGCCACCTCCGGAACCAAAGGGGATGATCGACACCTTGCCTCTGCTTACCCAGAAATTTGGGAGGAGAGCAGGGGACATGAAGATGGCAAGCTTGGCAAATTACTTTGGTCTGGGGCGACAAAGTCACAGGAGCCTTGATGATGTTAGGATGAATCTTGAAGTTCTCAAGTATTGTGCTACAGTTCTCTTCTTGGAGGCAAGTCTTCCAGGAGTGCTGACTGTTGAGAACCTGGTGGAGCGTGCAATTACAAGGAGCCAAGCTAATGGAGCTGCTTCTCCTGAGGTGCCAAAACCTGTAGCACGGTCTTCACCTGATTCCTCAAAACGGCAACGAACAATTTCTCGAGTTGACAATGCAATCCAAGCTGGAGATCGATGCAAGTTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTTTCAACTGAGTCCATCCAAATTTCTGTTCCTTCTTCCTACCGATTAACTCGAAAAACTTCTATCAAGCACAAAGGTAGCCCGATCCAACTTTGTTGTGCCGGTCTGCGGATCCAGTTTGGAGTCAGCACAAAGTTCCTAGACAGCGCAGGTCGCCCAAAGNTGAACATACTGGTTGACATCCCTGAGAATCTCAGTAAAATTCTAGAATTCTGTGATGGTATCGCTCAGAAATCATCTCAGGATTCTGGGAGCACTTTCTGAATGGAGACCATTGATTAAAAAATATGGGTATGTGAATCGTCCTACTGTCCGNCTACACATTCCCACTATTGTCAGCGGTGAANCTGCGACCTATGGGAACCGACATATACCAGAAAGAGGCTAGCGGCAACATTCANAANCT] consensusID : consensus_8737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTATTACAGAGCATCAAAGGCATAGAGGTACTGGTAATACTTTACAGGGCATATAAATTCCTAGTTCAGGATCAACATGGGCTGCTGGTCAGATCTAACCAACACTTTGAATTATTTACATCTGGCTAACACCACTAAATTAGGGCAAGAGTTAGTTTCTAGCACTAGGATCATAAGCAGTTAGTCCGATGCTATTTGGATTGTACAACCAGCTTCTTAGCAACCAGCCGGATACCAGCATTTTGCTCGTAGTCATATAGTTCCAGGGAGAAAAATGCGTCCACCGTGTTCCCTCGAACAAACCAAGAGTCCAGGTCCGCGAGATCTACCTTGGTGAAAACTAGCTTCTGAATGGTGCCGCTAGCCTCTTTCTGGGAAATGTCGGGTCCATAGGTGGCACGTTCACCGCTGACAATAGTGCGGGATTGGGTCGGCGGACAGGCGTGACCATCCACGGGGCCATATTTTTTTACGCAATGCTACACATTCGCAGGNGGCCCCAAAACACGGACGGTTGCAGAGAAACTTTGGGGTCGCACCGTACGTGGATGGGGGGCGCGCGGGCACGAGGGGGCGGCGAGACGTCGCCAGAGGCTTAGGAGCGAAGGGTTTGGAACTAACAGGCGGCTGGGAGAGGCCGC] [+] EMBL CA759015 [TTTTTTTTTTTTTTTTTTTTTTATTACAGAGCATCAAAGGCATAGAGGTACTGGTAATACTTTACAGGGCATATAAATTCCTAGTTCAGGATCAACATGGGCTGCTGGTCAGATCTAACCAACACTTTGAATTATTTACATCTGGCTAACACCACTAAATTAGGGCAAGAGTTAGTTTCTAGCACTAGGATCATAAGCAGTTAGTCCGATGCTATTTGGATTGTACAACCAGCTTCTTAGCAACCAGCCGGATACCAGCATTTTGCTCGTAGTCATATAGTTCCAGGGAGAAAAATGCGTCCACCGTGTTCCCTCGAACAAACCAAGAGTCCAGGTCCGCGAGATCTACCTTGGTGAAAACTAGCTTCTGAATGGTGCCGCTAGCCTCTTTCTGGGAAATGTCGGGTCCATAGGTGGCACGTTCACCGCTGACAATAGTGCGGGATTGGGTCGGCGGACAGGCGTGACCATCCACGGGGCCATATTTTTTTACGCAATGCTACACATTCGCAGGNGGCCCCAAAACACGGACGGTTGCAGAGAAACTTTGGGGTCGCACCGTACGTGGATGGGGGGCGCGCGGGCACGAGGGGGCGGCGAGACGTCGCCAGAGGCTTAGGAGCGAAGGGTTTGGAACTAACAGGCGGCTGGGAGAGGCCGC] consensusID : consensus_8737#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GAATTGTCCTACTGTCCGCCTACACATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTNTGGGCCCGAAATATCCCAGAAAGAGGCTAGCGGCAACATTTCNGAAGCTAGTTTTCAGCAAGGTAGATGTCGCGGAGCTGGACTCTTGGTTTGTTCGAGGGAACATGGTGGACGCATTCTTCTCTCTGGAACTATATGACTACGAAGAAAATGCTGGTATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTATGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGTTAGCCAGATGTAAATAATTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGATCCTGAACTAGGAATTTATATGCGCTGTAAAATATTAACAGTACCTCTATGCCTTTGATGCTCTGTAATAAAATCTCCAGGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030870 [GAATTGTCCTACTGTCCGCCTACACATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTNTGGGCCCGAAATATCCCAGAAAGAGGCTAGCGGCAACATTTCNGAAGCTAGTTTTCAGCAAGGTAGATGTCGCGGAGCTGGACTCTTGGTTTGTTCGAGGGAACATGGTGGACGCATTCTTCTCTCTGGAACTATATGACTACGAAGAAAATGCTGGTATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTATGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGTTAGCCAGATGTAAATAATTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGATCCTGAACTAGGAATTTATATGCGCTGTAAAATATTAACAGTACCTCTATGCCTTTGATGCTCTGTAATAAAATCTCCAGGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8737#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [GCGACCTATGGGACCGAAATATACCAGAAAGAGGCTAGCGGCAACATTCAGAAGCTAGTTTTCAGCAAGGTAGATGTCGCGGACTGGACTCTTGGTTTGTTCGAGGGAACATGGTGGACGCATTCTTCTCTCTGGAACTATATGACTACGAAGAAAATGCTGGTATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTATGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGTTAGCCAGATGTAAATAATTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGATCCTGAACTAGGAATTTATATGCGCTGTAAAATATTAACCAGTACCTCTAATGCCTTTGGATGCTCTGTAATAAAATCTCCAGGTGTTATTTCCTTGTATTTAAAAAAAA] [+] EMBL AU071176 [GCGACCTATGGGACCGAAATATACCAGAAAGAGGCTAGCGGCAACATTCAGAAGCTAGTTTTCAGCAAGGTAGATGTCGCGGACTGGACTCTTGGTTTGTTCGAGGGAACATGGTGGACGCATTCTTCTCTCTGGAACTATATGACTACGAAGAAAATGCTGGTATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTATGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGTTAGCCAGATGTAAATAATTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGATCCTGAACTAGGAATTTATATGCGCTGTAAAATATTAACCAGTACCTCTAATGCCTTTGGATGCTCTGTAATAAAATCTCCAGGTGTTATTTCCTTGTATTTAAAAAAAA] consensusID : consensus_8737#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CCAAGCTGGAGGTAACCAACAATCAATCGATCCTGCAACAAACAAGGAACCCATTGAGTTGATATCCAATATCGAGGAAATGACATTAGGTTCTGGCATACAGATCGATGCAAGTTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTTTCAACTGAGTCCATCCAAATTTCTGTTCCTTCTTCCTACCGATTAACTCGAAAAACATCTATCAAGCACAAAGGTAGCCCGATCCAACTTTGTTGTGCTGGTCTGCGGATCCAGTTTGGAGTCAGCACAAAGTTCCTAGACAGCGCAGGTCGCCCAAAGTTGAACATACTGGGTTGACATCCCTGAGAATCTCAGTAAAATTCTAGAATTCTGTGGATGGTATCGCTCAGAAATCATCTCAGGATTCTGGGNGCAC] [+] EMBL AU030869 [CCAAGCTGGAGGTAACCAACAATCAATCGATCCTGCAACAAACAAGGAACCCATTGAGTTGATATCCAATATCGAGGAAATGACATTAGGTTCTGGCATACAGATCGATGCAAGTTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTTTCAACTGAGTCCATCCAAATTTCTGTTCCTTCTTCCTACCGATTAACTCGAAAAACATCTATCAAGCACAAAGGTAGCCCGATCCAACTTTGTTGTGCTGGTCTGCGGATCCAGTTTGGAGTCAGCACAAAGTTCCTAGACAGCGCAGGTCGCCCAAAGTTGAACATACTGGGTTGACATCCCTGAGAATCTCAGTAAAATTCTAGAATTCTGTGGATGGTATCGCTCAGAAATCATCTCAGGATTCTGGGNGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8737#0 GGGGGGTTTGACTCGGCCAGAATAAGGGAAGCATTCGCTGAAATTGGACGGCCACCTCCG 60 consensus_8737#4 ------------------------------------------------------------ consensus_8737#2 ------------------------------------------------------------ consensus_8737#3 ------------------------------------------------------------ consensus_8737#1 ------------------------------------------------------------ consensus_8737#0 GAACCAAAGGGGATGATCGACACCTTGCCTCTGCTTACCCAGAAATTTGGGAGGAGAGCA 120 consensus_8737#4 ------------------------------------------------------------ consensus_8737#2 ------------------------------------------------------------ consensus_8737#3 ------------------------------------------------------------ consensus_8737#1 ------------------------------------------------------------ consensus_8737#0 GGGGACATGAAGATGGCAAGCTTGGCAAATTACTTTGGTCTGGGGCGACAAAGTCACAGG 180 consensus_8737#4 ------------------------------------------------------------ consensus_8737#2 ------------------------------------------------------------ consensus_8737#3 ------------------------------------------------------------ consensus_8737#1 ------------------------------------------------------------ consensus_8737#0 AGCCTTGATGATGTTAGGATGAATCTTGAAGTTCTCAAGTATTGTGCTACAGTTCTCTTC 240 consensus_8737#4 ------------------------------------------------------------ consensus_8737#2 ------------------------------------------------------------ consensus_8737#3 ------------------------------------------------------------ consensus_8737#1 ----------------------------------------------------------TT 2 consensus_8737#0 TTGGAGGCAAGTCTTCCAGGAGTGCTGACTGTTGAGAACCTGGTGGAGCGTGCAATTACA 300 consensus_8737#4 ------------------------------------------------------------ consensus_8737#2 -------------GAATTGTCCTACTGTCCGCCTACACATCCCCACTATTGTCAGCGGTG 47 consensus_8737#3 ------------------------------------------------------------ consensus_8737#1 TTTTTTTTTTTTTTTTTTTTATTACAGAGCATCAAAGGCATAGAGGTACTGGTAATACTT 62 consensus_8737#0 AGGAGCCAAGCTAATGGAGCTGCTTCTCCTGAGGTGCCAAAACCTGTAGCACGGTCTTCA 360 consensus_8737#4 -----CCAAGCT---GGAGGTAACCAAC---AATCAATCGATCCTGCAACAAA-----CA 44 consensus_8737#2 AAGCTGCGACCTNTGGGCCCGAAATATCCCAGAAAGAGGCTAGCGGCAACATTT--CNGA 105 consensus_8737#3 -----GCGACCTATGGGACCGAAATATACCAGAAAGAGGCTAGCGGCAACATT---CAGA 52 consensus_8737#1 TACAGGGCATATAAATTCCTAGTTCAGGATCAACATGGGCTGCTGGTCAGATCTAACCAA 122 * * * * * consensus_8737#0 CCTG---ATTCCTCAAAAC--GGCAACGAACAATTTCTCGAGTTGACAATGCAATCCAAG 415 consensus_8737#4 AGGA---ACCCATTGAGTT--GATATCCAATA--TCGAGGAAATGACATTAGGTTCTGGC 97 consensus_8737#2 AGCT---AGTTTTCAGCAA--GGTAGATGTCGCGGAGCTGGACTCTTGGTTTGTTCGAGG 160 consensus_8737#3 AGCT---AGTTTTCAGCAA--GGTAGATGTCGCGGA-CTGGACTCTTGGTTTGTTCGAGG 106 consensus_8737#1 CACTTTGAATTATTTACATCTGGCTAACACCACTAAATTAGGGCAAGAGTTAGTTTCTAG 182 * * * * * consensus_8737#0 CTGGA-GATCG-ATGCAAG-TTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTT 472 consensus_8737#4 ATACA-GATCG-ATGCAAG-TTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTT 154 consensus_8737#2 GAACATGGTGG-ACGCATTCTTCTCTCTGGAACTATATGA-CTACGAAGAAAATGCTGGT 218 consensus_8737#3 GAACATGGTGG-ACGCATTCTTCTCTCTGGAACTATATGA-CTACGAAGAAAATGCTGGT 164 consensus_8737#1 CACTAGGATCATAAGCAGTTAGTCCGATGCTATT-TGGATTGTACAACCAGCTTCTTAGC 241 * * * * *** * * * * * * consensus_8737#0 --TCAACTGAGTCCATCCAAATTT-CTGTTCCTTCTTCCTACCGATTAACTCGAAAAACT 529 consensus_8737#4 --TCAACTGAGTCCATCCAAATTT-CTGTTCCTTCTTCCTACCGATTAACTCGAAAAACA 211 consensus_8737#2 ATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTA 278 consensus_8737#3 ATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTA 224 consensus_8737#1 AACCAGCCGGATACCAGCATTTTGCTCGTAGTCATATAGTTCCAGGGAGAAAAATGCGT- 300 * * * * * * * ** * * consensus_8737#0 TCTATCAAGCAC--AAAGGTAGCCC--GATCCAACTTTGTTGTGC-CGGTCTG-CGGATC 583 consensus_8737#4 TCTATCAAGCAC--AAAGGTAGCCC--GATCCAACTTTGTTGTGC-TGGTCTG-CGGATC 265 consensus_8737#2 TGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGT-TAGCCAGATGTAAA 337 consensus_8737#3 TGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGT-TAGCCAGATGTAAA 283 consensus_8737#1 CCACCGTGTTCCCTCGAACAAACCAAGAGTCCAGGTCCGCGAGATCTACCTTGGTGAAAA 360 * * * * * * * * * * * consensus_8737#0 CAG--TTTGGAGT-CAGCACAAAGTTCCTAGACAGCGCAGGTCGC--CCAAAGNTGA--- 635 consensus_8737#4 CAG--TTTGGAGT-CAGCACAAAGTTCCTAGACAGCGCAGGTCGC--CCAAAGTTGA--- 317 consensus_8737#2 TAA--TTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGA--TC----CTGA--- 386 consensus_8737#3 TAA--TTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGA--TC----CTGA--- 332 consensus_8737#1 CTAGCTTCTGAATGGTGCCGCTAGCCTCTTTCTGGGAAATGTCGGGTCCATAGGTGGCAC 420 ** * * * * * * ** * * ** consensus_8737#0 ACATACTGG-TTGAC--ATCCCTGAGAATCTCAGTAAAATT-CTAGAAT-TCTGTG-ATG 689 consensus_8737#4 ACATACTGGGTTGAC--ATCCCTGAGAATCTCAGTAAAATT-CTAGAAT-TCTGTGGATG 373 consensus_8737#2 ACTAGGAATTTATAT--GCGCTGTAAAATATTAAC-AGTAC-CTCTA-TGCCTTTG-ATG 440 consensus_8737#3 ACTAGGAATTTATAT--GCGCTGTAAAATATTAACCAGTAC-CTCTAATGCCTTTGGATG 389 consensus_8737#1 GTTCACCGCTGACAATAGTGCGGGATTGGGTCGGCGGACAGGCGTGACCATCCACGGGGC 480 * * * * * * * * consensus_8737#0 GTATCGCTCAGAAATCATCTCAGGATTCTGGGAGCACTTTCTGAATGGAGACCATTGATT 749 consensus_8737#4 GTATCGCTCAGAAATCATCTCAGGATTCTGGGNGCAC----------------------- 410 consensus_8737#2 CT----CTGTAATAAAATCTCCAGGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 496 consensus_8737#3 CT----CTGTAATAAAATCTCCAGGTGTTATTTCCTTGTATTTAAAAAAAA--------- 436 consensus_8737#1 CATATTTTTTTACGCAATGCTACACATTCGCAGGNGGCCCCAAAACACGGACGGTTGCAG 540 * * ** consensus_8737#0 AAAAAATATGGGTATGTGAATCGTCCTACTGTCCGNCTACACATTCCCACTATTGTCAGC 809 consensus_8737#4 ------------------------------------------------------------ consensus_8737#2 AAAAAA------------------------------------------------------ 502 consensus_8737#3 ------------------------------------------------------------ consensus_8737#1 AGAAACTTTGGGGTCGCACCGTACGTGGATGGGGGGCGCGCGGGCACGAGGGGGCGGCGA 600 consensus_8737#0 GGTGAANCTGCGACCTATGGGAACCGACATATACCAGAAAGAGGCTAGCGGCAACATTCA 869 consensus_8737#4 ------------------------------------------------------------ consensus_8737#2 ------------------------------------------------------------ consensus_8737#3 ------------------------------------------------------------ consensus_8737#1 GACGTCGCCAGAGGCTTAGGAGCGAAGGGTTTGGAACTAACAGGCGGCTGGGAGAGGCCG 660 consensus_8737#0 NAANCT 875 consensus_8737#4 ------ consensus_8737#2 ------ consensus_8737#3 ------ consensus_8737#1 C----- 661 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||