|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence
[CTCTCTTCTCTTCTTCTTCTTCAATTTTCCTCGCACCGTCGGCGAAGGCGAAGCGGAAGAGGCGGCGGAGCAGTAGCTAGTCTACTAGCTAGTAGTAGTAGCTCGCCGGCGAGCGGAGAGGAGGAGCCGAGGAGGAGGAGGAGCTTCGTGGCCGGCCGGGCCGCCATGGAGAGCCGCAAGGAGGAGGAGCAGCATGGGGGAGGAGGGGCGGTGGGGTGGATGACGGTGCCGGCGTTCGGGGAGTGGGACATGAAGAACGGCGCGGTGCCGGACTACTCCATGGACTCCTCCAAGATCCGGGAGATGCGCAAGCAGAACAAGCGCGAGCTCTCCCGCGCCAGCCTCGGCGGGGACGA-CGACCTCCTCGCCGCGCAGCAGCACAAGGCCGCCGCGCCGCAGCCCGCCCCCAACGCCTCCGCCGCCGC-CGACGACCACCGCCGGCCGCTCCACGCCGCCCACG-ACGACTCGCCCACGGGGAGGAA-G-AAGTTCCTTAGCTATTTCCAGT-GCTGTATAAGAGCCTGGAGAACT-GTGACCCTGCCCGTCGT-GTTGGCGGCAC-GTAACTCCTGCGCAAATAGCTCTTAGGTTTCTTGGGTAC-TGTAAA-GTTTGCGTAAATGTGTAATCTCCACCTGCTCTGTAATCTGTTGCTCTTTGCAGAGAAAAAAAAGGGGACCGATT-G-TGAACAATGA-AAAAGCGTAT-TTGTTCATGCTGTT-TTTCGCAGAATTGTTCGCGACTTCCGGTG-CAGTATCATCGTCCTTTGAAAGGGATAGGATCCGAGGATGTATGAGTATAACTTATGATTGATTTGGTTCTTGGTTGGAGAATATAATTTTCACCT-GGTGACCTGTGATGATGA]
[+] EMBL AK066928 [CTCTCTTCTCTTCTTCTTCTTCAATTTTCCTCGCACCGTCGGCGAAGGCGAAGCGGAAGAGGCGGCGGAGCAGTAGCTAGTCTACTAGCTAGTAGTAGTAGCTCGCCGGCGAGCGGAGAGGAGGAGCCGAGGAGGAGGAGGAGCTTCGTGGCCGGCCGGGCCGCCATGGAGAGCCGCAAGGAGGAGGAGCAGCATGGGGGAGGAGGGGCGGTGGGGTGGATGACGGTGCCGGCGTTCGGGGAGTGGGACATGAAGAACGGCGCGGTGCCGGACTACTCCATGGACTCCTCCAAGATCCGGGAGATGCGCAAGCAGAACAAGCGCGAGCTCTCCCGCGCCAGCCTCGGCGGGGACGA CGACCTCCTCGCCGCGCAGCAGCACAAGGCCGCCGCGCCGCAGCCCGCCCCCAACGCCTCCGCCGCCGC CGACGACCACCGCCGGCCGCTCCACGCCGCCCACG ACGACTCGCCCACGGGGAGGAA G AAGTTCCTTAGCTATTTCCAGT GCTGTATAAGAGCCTGGAGAACT GTGACCCTGCCCGTCGT GTTGGCGGCAC GTAACTCCTGCGCAAATAGCTCTTAGGTTTCTTGGGTAC TGTAAA GTTTGCGTAAATGTGTAATCTCCACCTGCTCTGTAATCTGTTGCTCTTTGCAGAGAAAAAAAAGGGGACCGATT G TGAACAATGA AAAAGCGTAT TTGTTCATGCTGTT TTTCGCAGAATTGTTCGCGACTTCCGGTG CAGTATCATCGTCCTTTGAAAGGGATAGGATCCGAGGATGTATGAGTATAACTTATGATTGATTTGGTTCTTGGTTGGAGAATATAATTTTCACCT GGTGACC ]
[+] EMBL BQ907229 [ CCTC GCGGGGACGATCGACCTCCTCGCCGCGCAGCAGCACAA GCCGCCGCNCCGCAGCCCGCCCCCAACGCCTCCGCCGCCGCACGACGACCACCGCCGGCCGCTCCACGCCGCCCACGTACGACTCGCCCACGGGGAGGAATGCAAGTTCCTTAGCTATTTCCAGTAGCTGTATCAGAGCCTGAAGAACTCGTGACCCTGCCCGTCGTCGTTGACGGCACTGTAACTCCTGCGCAAATAGCTCTTAGGTTTCTTGGGTACATGTAAACGTTTGCGTAAATGTGTAATCTCCACCTGCTCTGTAATCTGTTGCTCTTTGCAGAG AAAAAAAGGGGACGGATTAGCTGAAACATGACAAAAGCGTATCTTGTTCATGCTGTTCTTTCACAGAATTGTTCGCGACTTCCGGTGCCAGTATCCTCGTCCTTTGAAAGGGATAGGATCCGAGGATGTATGAGTATAACTTATGATTGATTTGGTTCTTGGTTGGAGAATATANTTTTCACCTCGGTGACCTGTGATGATGA]
consensusID : consensus_8740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence
[CCAGGAGGAAGAAGATATTCTAGAGATAATTTAGAGAGATCAGTTGCGTTTGGCGAGGCTGCGTGAGAGAGATCATCATTATCCAGCAAACCACCATGGAGAACATCAAGGGGGGGCATGGCGCGGCGGCGGCGGGCGGCCGGAACGGGTGGATGACGGTGCCGGCGTTCGGGGACTGGGACATGAAGAACGGCGCGCTGCCGGACTACTCCATGGATTTCTCCAAGATCCGCGAGATGCGGAAGCAGAACAAGAAGGAGCTCTCCCGCACCAGCCTCGGCGGCGACGACGACCTCCTCGCCCAGCAGAAGCAGCAGCAGCCGCAGCCGCAGCAGAAGCCCGCCAAGGCCAACCTCGGCCGGCCGGCCGACGACCACAACCACCGGCAACTCCATGGCCGCCACGGCTCGCCGACGGGAAGGAGGACGTTTCTGAGCTACTTCCAGTGCTGTATTAAGGCCTGAAGAAGGACTGTCAACTACTGCTATTGGCTGTACTGTTGTGTCACAGTGCAAACTACTCAGCTTATTTTTAGATTAGGCTTCTTGGGCTTTGTCAAGCCTAGCAAGATGTGTAATATATTCGTCGTGATGCTTAATGGTTTGGTCATTCAGAGAACAAAACTATTTATGAGTGGCACAGATTGCTTGCGAATTGAGGTGCAAAGCTGTAATATATTGAAGGATAAATGGCATCTT]
[-] EMBL CB652725 [CCAGGAGGAAGAAGATATTCTAGAGATAATTTAGAGAGATCAGTTGCGTTTGGCGAGGCTGCGTGAGAGAGATCATCATTATCCAGCAAACCACCATGGAGAACATCAAGGGGGGGCATGGCGCGGCGGCGGCGGGCGGCCGGAACGGGTGGATGACGGTGCCGGCGTTCGGGGACTGGGACATGAAGAACGGCGCGCTGCCGGACTACTCCATGGATTTCTCCAAGATCCGCGAGATGCGGAAGCAGAACAAGAAGGAGCTCTCCCGCACCAGCCTCGGCGGCGACGACGACCTCCTCGCCCAGCAGAAGCAGCAGCAGCCGCAGCCGCAGCAGAAGCCCGCCAAGGCCAACCTCGGCCGGCCGGCCGACGACCACAACCACCGGCAACTCCATGGCCGCCACGGCTCGCCGACGGGAAGGAGGACGTTTCTGAGCTACTTCCAGTGCTGTATTAAGGCCTGAAGAAGGACTGTCAACTACTGCTATTGGCTGTACTGTTGTGTCACAGTGCAAACTACTCAGCTTATTTTTAGATTAGGCTTCTTGGGCTTTGTCAAGCCTAGCAAGATGTGTAATATATTCGTCGTGATGCTTAATGGTTTGGTCATTCAGAGAACAAAACTATTTATGAGTGGCACAGATTGCTTGCGA ]
[+] EMBL AK063222 [ CATGGCGCGGCGGCGGCGGGCGGCCGGAACGGGTGGATGACGGTGCCGGCGTTCGGGGACTGGGACATGAAGAACGGCGCGCTGCCGGACTACTCCATGGATTTCTCCAAGATCCGCGAGATGCGGAAGCAGAACAAGAAGGAGCTCTCCCGCACCAGCCTCGGCGGCGACGACGACCTCCTCGCCCAGCAGAAGCAGCAGCAGCCGCAGCCGCAGCAGAAGCCCGCCAAGGCCAACCTCGGCCGGCCGGCCGACGACCACCGCCACCGGCAACTCCATGGCCGCCACGGCTCGCCGACGGGAAGGAGGACGTTTCTGAGCTACTTCCAGTGCTGTATTAAGGCCTGAAGAAGGACTGTCAACTACTGCTATTGGCTGTACTGTTGTGTCACAGTGCAAACTACTCAGCTTATTTTTAGATTAGGCTTCTTGGGCTTTGTCAAGCCTAGCAAGATGTGTAATATATTCGTCGTGATGCTTAATCTTTTGGTCATTCAGAGAACAAAACTATTTATGAGTGGCACAGATTGCTTGCGAATTGAGGTGCAAAGCTGTAATATATTGAAGGATAAATGGCATCTT]
consensusID : consensus_8740#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[CTACCACCTCCAAGACAAGTTGAGCACTGCTCAGCTTGGCAGCTTGCCATCCAGGAGGAAGAAGATATTCTAGAGATAATCTAGAGAGATCAGTTGCGTTTTGCGAGGCTGCGTGAGAGAGATCATCATTATCCAGCAAACCACCATGGAGAACATCAAGGGGGGGCATGGCGCGGCGGCGGCGGGCGGCCGGAACGGGTGGATGACGGTGCCGGCGTTCGGGGACTGGGACATGAAGAACGGCGCGGTGCCGGACTACTCCATGGACTTCTCCAAGATCCGGGAGATGCGCAAGCAGAACAAGCGCGAGCTCTCCCGCGCCAGCCTCGGCGGGGACGACGACCTCCTCGCCGCGCAGCAGCACAAGGCCGCCGCGCCGCAGCCCGCCCCCAACGCCTCCGCCGCCGCCGACGACCACC]
[+] EMBL CA753652 [CTACCACCTCCAAGACAAGTTGAGCACTGCTCAGCTTGGCAGCTTGCCATCCAGGAGGAAGAAGATATTCTAGAGATAATCTAGAGAGATCAGTTGCGTTTTGCGAGGCTGCGTGAGAGAGATCATCATTATCCAGCAAACCACCATGGAGAACATCAAGGGGGGGCATGGCGCGGCGGCGGCGGGCGGCCGGAACGGGTGGATGACGGTGCCGGCGTTCGGGGACTGGGACATGAAGAACGGCGCGGTGCCGGACTACTCCATGGACTTCTCCAAGATCCGGGAGATGCGCAAGCAGAACAAGCGCGAGCTCTCCCGCGCCAGCCTCGGCGGGGACGACGACCTCCTCGCCGCGCAGCAGCACAAGGCCGCCGCGCCGCAGCCCGCCCCCAACGCCTCCGCCGCCGCCGACGACCACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8740#1 ------------------------------------------------------------
consensus_8740#2 -----------CTACCACCTCCAAGACAAGTTGAGCACTGCTCAGCTTGGCAGCTTGCCA 49
consensus_8740#0 CTCTCTTCTCTTCTTCTTCTTCAATTTTCCTCGCACCGTCGGCGAAGGCGAAGCGGAAGA 60
consensus_8740#1 -CCAG-GAGGAAGAAGATATTCTAG-AGATAATTTAGAGAGATCAGTTGCGTTTGGCGAG 57
consensus_8740#2 TCCAG-GAGGAAGAAGATATTCTAG-AGATAATCTAGAGAGATCAGTTGCGTTTTGCGAG 107
consensus_8740#0 GGCGGCGGAGCAGTAGCTAGTCTACTAGCTAGTAGTAGTAGCTCGCCGGCGAGCGGAGAG 120
* * * * ** ** ** **** ** ** * ** ** *** * ***
consensus_8740#1 GCTGCGT-------GAGAGAGATCATCATTATCCAGCAAACCACCATGGAGAACATCAAG 110
consensus_8740#2 GCTGCGT-------GAGAGAGATCATCATTATCCAGCAAACCACCATGGAGAACATCAAG 160
consensus_8740#0 GAGGAGCCGAGGAGGAGGAGGAGCTTCGTGGCCGGCCGGGCCGCCATGGAGAGCCGCAAG 180
* * * *** ** * ** * * * ** ********* * ****
consensus_8740#1 GGGGGGCATGGCGCGGCGGCGGCGGGCGGCCGGAACGGGTGGATGACGGTGCCGGCGTTC 170
consensus_8740#2 GGGGGGCATGGCGCGGCGGCGGCGGGCGGCCGGAACGGGTGGATGACGGTGCCGGCGTTC 220
consensus_8740#0 GAGGAGGA--GCAGCATGGGGGAGGAGGGGCGGTG-GGGTGGATGACGGTGCCGGCGTTC 237
* ** * * ** ** ** ** ** *** ************************
consensus_8740#1 GGGGACTGGGACATGAAGAACGGCGCGCTGCCGGACTACTCCATGGATTTCTCCAAGATC 230
consensus_8740#2 GGGGACTGGGACATGAAGAACGGCGCGGTGCCGGACTACTCCATGGACTTCTCCAAGATC 280
consensus_8740#0 GGGGAGTGGGACATGAAGAACGGCGCGGTGCCGGACTACTCCATGGACTCCTCCAAGATC 297
***** ********************* ******************* * **********
consensus_8740#1 CGCGAGATGCGGAAGCAGAACAAGAAGGAGCTCTCCCGCACCAGCCTCGGCGGCGACGAC 290
consensus_8740#2 CGGGAGATGCGCAAGCAGAACAAGCGCGAGCTCTCCCGCGCCAGCCTCGGCGGGGACGAC 340
consensus_8740#0 CGGGAGATGCGCAAGCAGAACAAGCGCGAGCTCTCCCGCGCCAGCCTCGGCGGGGACGAC 357
** ******** ************ ************ ************* ******
consensus_8740#1 GACCTCCTCGCCCAGCAGAAGCAGCAGCAGCCGCAGCCGCAGCAGAAGCCCGCCAAGGCC 350
consensus_8740#2 GACCTCCTCGCCGCGCAGCAGCACAAG--GCCGCCGC-GCCGCAGCCCGCCCCCAACGCC 397
consensus_8740#0 GACCTCCTCGCCGCGCAGCAGCACAAG--GCCGCCGC-GCCGCAGCCCGCCCCCAACGCC 414
************ **** **** ** ***** ** ** **** ** **** ***
consensus_8740#1 AACCTCGGCCGGCCGGCCGACGACCACAACCACCGGCAACTCCATGGCCGCCACGGCTCG 410
consensus_8740#2 ----TCCGCCGCC--GCCGACGACCACC-------------------------------- 419
consensus_8740#0 ----TCCGCCGCC--GCCGACGACCACCGCCGGCCGCTCCACGCCGCCCACGACGACTCG 468
** **** * ************
consensus_8740#1 CCGACGGGAAGGAGGACGTTTCTGAGCTACTTCCAGTGCTGTATTAAGGCCTGAAGAAGG 470
consensus_8740#2 ------------------------------------------------------------
consensus_8740#0 CCCACGGGGAGGAAGAAGTTCCTTAGCTATTTCCAGTGCTGTATAAGAGCCTGGAGAACT 528
consensus_8740#1 ACTGTCA-ACTACTGCTATTGGCTGTACTGTTGTGTCACAGTGCAAACTACTCAGCTTAT 529
consensus_8740#2 ------------------------------------------------------------
consensus_8740#0 GTGACCCTGCCCGTCGTGTTGGCGGCACGTAACTCCTGCGCAAATAGCTCTTAGGTTTCT 588
consensus_8740#1 TTT-TAGATTAGGCTTCTTGGGCTTTGTCAAGCCTAGCAAGATGTGTAATATATTCGTCG 588
consensus_8740#2 ------------------------------------------------------------
consensus_8740#0 TGGGTACTGTAAAGTTTGCGTAAATGTGTAATCTCCACCTGCTCTGTAATCTGTTGCTCT 648
consensus_8740#1 TGATGCTTAATGG-------------TTTGGTCATTCAGAGAACAAAACTATTTATGAG- 634
consensus_8740#2 ------------------------------------------------------------
consensus_8740#0 TTGCAGAGAAAAAAAAGGGGACCGATTGTGAACAATGAAAAAGCGTATTTGTTCATGCTG 708
consensus_8740#1 --TGGCACAGA-TTGCTTGCGAATTGAGGTGCAAAGCTGTAATATATTGAAGGATAAATG 691
consensus_8740#2 ------------------------------------------------------------
consensus_8740#0 TTTTTCGCAGAATTGTTCGCGACTTCCGGTGCAGTATCATCGTCCTTTGAAAGGGATAGG 768
consensus_8740#1 GCATCTT----------------------------------------------------- 698
consensus_8740#2 ------------------------------------------------------------
consensus_8740#0 ATCCGAGGATGTATGAGTATAACTTATGATTGATTTGGTTCTTGGTTGGAGAATATAATT 828
consensus_8740#1 -------------------------
consensus_8740#2 -------------------------
consensus_8740#0 TTCACCTGGTGACCTGTGATGATGA 853
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||