These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1178 fasta sequence [ACCATTAATCCCAGCACTTGATATGGCTGGTAGCCTTGCTCCCATAGAAAAATGTACTGAATCCAGATACTGAACTGAGAAGCATTTGAGCTTGAGCCTTCGCAGGACATCTCTACCATTGTCAATAGATCAACGTGTCAAATCTTGGCTCATAAAAACAGATCTGGCTATTGCAAAGCTGGCTTGCACAACCAGCAATCCATGACCAAGCCTTCTTATCCACATCGTATAGAAGACCTTTTCCCTGGTTCCACGATGTGAAACATATCAAGTTGTCCTGCCCAAAGCACTCGAACCTTTCAGCAGACAACCTCAGCAAAGCCCTGAAGTACTTGGGCGGCATCCGGCTTATCTCTACCCAGACTGTCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCCCAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCCGGCGCCGTCAAAGCCGGAGAAGCAGACGAGACCCCCCGAGGAGCCGACTAGCCAGAGGTCCCAGGCGGGGAGGAAGCCGAACGGGAGCTTGTAGCGGGCGCGGAGGGGCAGGCTGAGCACGCTGCACTGCGGCGGCGAGCTCGCGGCGCCCCTCCAGAAGGTGAGGAGGCAGGGCCCGTGGGAGGGGACCCCGGCGTGCGCGGCGAGGAAGGCCGGGTCGTGGAGGATGGAGTCCCAGCGGCGGGAGACGGGGCGGAGGCGGAAGAGCAGGAAGGGCGGGACGCGGGCGAGCACCTCGAGGAGGAGGTCGTCGGGGAGGGGCGCCCAGACGCGCGCAGGCATG] [+] EMBL CB659075 [ACCATTAATCCCAGCACTTGATATGGCTGGTAGCCTTGCTCCCATAGAAAAATGTACTGAATCCAGATACTGAACTGAGAAGCATTTGAGCTTGAGCCTTCGCAGGACATCTCTACCATTGTCAATAGATCAACGTGTCAAATCTTGGCTCATAAAAACAGATCTGGCTATTGCAAAGCTGGCTTGCACAACCAGCAATCCATGACCAAGCCTTCTTATCCACATCGTATAGAAGACCTTTTCCCTGGTTCCACGATGTGAAACATATCAAGTTGTCCTGCCCAAAGCACTCGAACCTTTCAGCAGACAACCTCAGCAAAGCCCTGAAGTACTTGGGCGGCATCCGGCTTATCTCTACCCAGACTGTCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCCCAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCC ] [+] EMBL CB659073 [ ctcTTTATCCCAGCACTTGATATGGCTGGTAGCCTTGCTCCACTATAAAAATGTACTGAATCCAGATACTGAACTGAGAAGCATTTGAGCTTGAGCCTTCGCAGGACATCTCTACCATTGTCAATAGATCAACGTGTCAAATCTTGGCTCATAAAAACAGATCTGGCTATTGCAAAGCTGGCTTGCACAACCAGCAATCCATGACCAAGCCTTCTTATCCACATCGTATAGAAGACCTTTTCCCTGGTTCCACGATGTGAAACATATCAAGTTGTCCTGCCCAAAGCACTCGAACCTTTCAGCAGACAACCTCAGCAAAGCCCTGAAGTACTTGGGCGGCATCCGGCTTATCTCTACCCAGACTGTCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCCCAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCG ] [-] EMBL CB659072 [ TCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCCCAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCCGGCGCCGTCAAAGCCGGAGAAGCAGACGAGACCCCCCGAGGAGCCGACTAGCCAGAGGTCCCAGGCGGGGAGGAAGCCGAACGGGAGCTTGTAGCGGGCGCGGAGGGGCAGGCTGAGCACGCTGCACTGCGGCGGCGAGCTCGCGGCGCCCCTCCAGAAGGTGAGGAGGCAGGGCCCGTGGGAGGGGACCCCGGCGTGCGCGGCGAGGAAGGCCGGGTCGTGGAGGATGGAGTCCCAGCGGCGGGAGACGGGGCGGAGGCGGAAGAGCAGGAAGGGCGGGACGCGGGCGAGCACCTCGAGGAGGAGGTCGTCGGGGAGGGGCGCCCAGACGCGCGCAGGCATG] [-] EMBL CB659074 [ TCTTCCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCCGGCGCCGTCAAAGCCGGAGAAGCAGACGAGACCCCCCGAGGAGCCGACTAGCCAGAGGTCCCAGGCGGGGAGGAAGCCGAACGGGAGCTTGTAGCGGGCGCGGAGGGGCAGGCTGAGCACGCTGCACTGCGGCGGCGAGCTCGCGGCGCCCCTCCAGAAGGTGAGGAGGCAGGGCCCGTGGGAGGGGACCCCGGCGTGCGCGGCGAGGAAGGCCGGGTCGTGGAGGATGGAGTCCCAGCGGCGGGAGACGGGGCGGAGGCGGAAGAGCAGGAAGGGCGGGACGCGGGCGAGCACCTCGAGGAGGAGGTCGTCGGGGAGGGGCGCCCAGACGCGCGCAGGCATG] consensusID : consensus_8741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [AGNNCCCAGANNNNCANNNNNNNCAGTGTGCTGTATNNNNNAATCCNTNNNACCAAGAACAACCGTGTGCGAGCTNNNGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAA] [-] EMBL CF197222 [AGNNCCCAGANNNNCANNNNNNNCAGTGTGCTGTATNNNNNAATCCNTNNNACCAAGAACAACCGTGTGCGAGCTNNNGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8741#0 ACCATTAATCCCAGCACTTGATATGGCTGGTAGCCTTGCTCCCATAGAAAAATGTACTGA 60 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 ATCCAGATACTGAACTGAGAAGCATTTGAGCTTGAGCCTTCGCAGGACATCTCTACCATT 120 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 GTCAATAGATCAACGTGTCAAATCTTGGCTCATAAAAACAGATCTGGCTATTGCAAAGCT 180 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 GGCTTGCACAACCAGCAATCCATGACCAAGCCTTCTTATCCACATCGTATAGAAGACCTT 240 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 TTCCCTGGTTCCACGATGTGAAACATATCAAGTTGTCCTGCCCAAAGCACTCGAACCTTT 300 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 CAGCAGACAACCTCAGCAAAGCCCTGAAGTACTTGGGCGGCATCCGGCTTATCTCTACCC 360 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 AGACTGTCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCC 420 consensus_8741#1 --------------------AGNNCCCAGANNNNCANNNNNNNCAGTGTGCTGTATNNNN 40 ** ****** ** ************* consensus_8741#0 CAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCA 480 consensus_8741#1 NAATCCNTNNNACCAAGAACAACCGTGTGCGAGCTNNNGCAACTAGATATCCATCCAGCA 100 ***** * ************************ ********************** consensus_8741#0 GCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCA 540 consensus_8741#1 GCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCA 160 ************************************************************ consensus_8741#0 TCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCG 600 consensus_8741#1 TCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCG 220 ************************************************************ consensus_8741#0 ACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGT 660 consensus_8741#1 ACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGT 280 ************************************************************ consensus_8741#0 CATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGA 720 consensus_8741#1 CATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGA 340 ************************************************************ consensus_8741#0 ACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGT 780 consensus_8741#1 ACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGT 400 ************************************************************ consensus_8741#0 CCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCCGGCGC 840 consensus_8741#1 CCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAA-------- 452 **************************************************** consensus_8741#0 CGTCAAAGCCGGAGAAGCAGACGAGACCCCCCGAGGAGCCGACTAGCCAGAGGTCCCAGG 900 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 CGGGGAGGAAGCCGAACGGGAGCTTGTAGCGGGCGCGGAGGGGCAGGCTGAGCACGCTGC 960 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 ACTGCGGCGGCGAGCTCGCGGCGCCCCTCCAGAAGGTGAGGAGGCAGGGCCCGTGGGAGG 1020 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 GGACCCCGGCGTGCGCGGCGAGGAAGGCCGGGTCGTGGAGGATGGAGTCCCAGCGGCGGG 1080 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 AGACGGGGCGGAGGCGGAAGAGCAGGAAGGGCGGGACGCGGGCGAGCACCTCGAGGAGGA 1140 consensus_8741#1 ------------------------------------------------------------ consensus_8741#0 GGTCGTCGGGGAGGGGCGCCCAGACGCGCGCAGGCATG 1178 consensus_8741#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||