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Oryza sativa
cluster # 8745 cluster # 8745       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8745#0 length = 1044 sequences # 5  

consensusID : consensus_8745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1044
fasta sequence
                              [ACTGCCATCGAGAGGTCGTCGTCGTCGTCGTCGATCACCTCGTCGTCGACGCACCACCAAAGCAAAGGCAAACCAAAACTCCTCTCCTCCTCCTCGTCTTCGCCGCCTGCGCGCGTCGCCGTCGCGTCCAGCCGGGGCGGAGGGAGGGGGGGTTCTTGAGGATGGTGGAGGTGGGAGGAGGAGCGGCGGAGGCGGCGGCGGGGAGGAGGTGGCGGCTGGCGGACGAGAGGTGCGACCTGCGCGCGGCGGAGACGGAGTACGTGAGGCGGTTCCACCGCCACGAGCCCCGCGACCACCAGTGCTCCTCCGCCGTCGCCAAGCACATCAAGGCCCCCGTCCACCTGGTTTGGTCTCTGGTGAGG-CGTTTTGATC-AGCCACAGCTTTTCAAGCCATTTGTGAGCCGGTGTGAGATGAAAGGG-AACATTGAGATTGGCAGTGTAAGGGAGG-TTAATGTTAAGTCTGGCCTGCCTGCC-ACAAGAAGCACTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA-CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG-CAGAGGTTTCTGAACGCCTGGTTGTCAAGGA-CCAAACCGAGCCCCTCGACCGGTGATTGTTG-CCAAGATTCCA-AGAGCTATTTTGTGTTGCAAATGCTTAATTAGATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTCAAACCAAAAGAGAAGAAAAAAAAATATTGTGCCTCCTCTTTGAGCCTCTGTTGCTGTTCTTTACCACCCTAGTATGTCACAAGGGCCTAAAAAAAATATTGT]

[+] EMBL AK064805             [ACTGCCATCGAGAGGTCGTCGTCGTCGTCGTCGATCACCTCGTCGTCGACGCACCACCAAAGCAAAGGCAAACCAAAACTCCTCTCCTCCTCCTCGTCTTCGCCGCCTGCGCGCGTCGCCGTCGCGTCCAGCCGGGGCGGAGGGAGGGGGGGTTCTTGAGGATGGTGGAGGTGGGAGGAGGAGCGGCGGAGGCGGCGGCGGGGAGGAGGTGGCGGCTGGCGGACGAGAGGTGCGACCTGCGCGCGGCGGAGACGGAGTACGTGAGGCGGTTCCACCGCCACGAGCCCCGCGACCACCAGTGCTCCTCCGCCGTCGCCAAGCACATCAAGGCCCCCGTCCACCTGGTTTGGTCTCTGGTGAGG CGTTTTGATC AGCCACAGCTTTTCAAGCCATTTGTGAGCCGGTGTGAGATGAAAGGG AACATTGAGATTGGCAGTGTAAGGGAGG TTAATGTTAAGTCTGGCCTGACTGCC ACAAGAAGCACTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG CAGAGGTTTCTGAACGCCTGGTTGTCAAGGA CCAAACCGAGCCCCTCGACCGGTGATTGTTG CCAAGATTCCA AGAGCTATTTTGTGTTGCAAATGCTTAATTAGATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTCAAACCAAAAGAGAAGAAAAAAAAA                                                                              ]
[+] EMBL AK059303             [         GAGAGGTCGTCGTCGTCGTCGTCGATCACCTCGTCGTCGACGCACCACCAAAGCAAAGGCAAACCAAAACTCCTCTCCTCCTCCTCGTCTTCGCCGCCTGCGCGCGTCGCCGTCGCGTCCAGCCGGGGCGGAGGGAGGGGGGGTTCTTGAGGATGGTGGAGGTGGGAGGAGGAGCGGCGGAGGCGGCGGCGGGGAGGAGGTGGCGGCTGGCGGACGAGAGGTGCGACCTGCGCGCGGCGGAGACGGAGTACGTGAGGCGGTTCCACCGCCACGAGCCCCGCGACCACCAGTGCTCCTCCGCCGTCGCCAAGCACATCAAGGCCCCCGTCCACCTGGTTTGGTCTCTGGTGAGG CGTTTTGATC AGCCACAGCTTTTCAAGCCATTTGTGAGCCGGTGTGAGATGAAAGGG AACATTGAGATTGGCAGTGTAAGGGAGG TTAATGTTAAGTCTGGCCTGCCTGCC ACAAGAAGCACTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG CAGAGGTTTCTGAACGCCTGGTTGTCAAGGA CCAAACCGAGCCCCTCGACCGGTGATTGTTG CCAAGATTCCA AGAGCTATTTTGTGTTGCAAATGCTTAATTAGATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTCAAACCAAAAGAGAAGAAAAAAAAATATTGTGCCTCCTCTTTGAGCCTCTGTTGCTGTTCTTTACCACCCTAGTATGTCACAAGGGCCTAAAAAAAATATTGT]
[+] EMBL AK104581             [          AGAGGTCGTCGTCGTCGTCGTCGATCACCTCGTCGTCGACGCACCACCAAAGCAAAGGCAAACCAAAACTCCTCTCCTCCTCCTCGTCTTCGCCGCCTGCGCGCGTCGCCGTCGCGTCCAGCCGGGGCGGAGGGAGGGGGGGTTCTTGAGGATGGTGGAGGTGGGAGGAGGAGCGGCGGAGGCGGCGGCGGGGAGGAGGTGGCGGCTGGCGGACGAGAGGTGCGACCTGCGCGCGGCGGAGACGGAGTACGTGAGGCGGTTCCACCGCCACGAGCCCCGCGACCACCAGTGCTCCTCCGCCGTCGCCAAGCACATCAAGGCCCCCGTCCACCTGGTTTGGTCTCTGGTGAGG CGTTTTGATC AGCCACAGCTTTTCAAGCCATTTGTGAGCCGGTGTGAGATGAAAGGG AACATTGAGATTGGCAGTGTAAGGGAGG TTAATGTTAAGTCTGGCCTGCCTGCC ACAAGAAGCACTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG CAGAGGTTTCTGAACGCCTGGTTGTCAAGGA CCAAACCGAGCCCCTCGACCGGTGATTGTTG CCAAGATTCCA AGAGCTATTTTGTGTTGCAAATGCTTAATTAGATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTCAAACCAAAAGAGAAGAAAAAAAAATA                                                                            ]
[+] EMBL BQ907597             [                                                                                                                                                                                                                                                                                                                                                                TCT GTGAGGCCTTTTTGATCAACCCACAGCTTTTCAA CCATTTGTGA CCGGTGTGAGATGAAAGGG AACATTGAGATT GCAGTGTAAGGGAGG TTAATGTTAAGTCT GCCTGCCTGCC ACAAGAAGCACTGAGAGGCTGGAGCTGTTAGATGAC ATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG CAGAGGTTTCTGAACGCCTGGTTGTCAAGGA CCAAACCGAGCCCCTCGACCGGTGATTGTTG CC AGATTCC  AGAGCTATTTTGTGTTGC AATGCTTAATTAGATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTC AACC AAAGAGAAGAAAANCAAATATTGT CCTCCTCTTTGACCCaaaa                                                    ]
[-] EMBL BU667220             [                                                                                                                                                                                                                                                                                                                                                                                                                              aAAAGGGAAACATGAAGATTGGCA T TAAGGGAGGTTTAATGTTAAGTCT GCCTGCCTGCCAACAAGAAGCCCTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCCCCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACACCCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTGCCAGAGGTTTCTGAACGCCTGGTTGTCAAGGACCCAACCCGAGCCCCTCGACCGGTGATTGTTGCCCCAGATTCCACAGAGCTA                                                                                                                                                                                                                                                    ]


>consensus_8745#0 ACTGCCATCGAGAGGTCGTCGTCGTCGTCGTCGATCACCTCGTCGTCGACGCACCACCAA AGCAAAGGCAAACCAAAACTCCTCTCCTCCTCCTCGTCTTCGCCGCCTGCGCGCGTCGCC GTCGCGTCCAGCCGGGGCGGAGGGAGGGGGGGTTCTTGAGGATGGTGGAGGTGGGAGGAG GAGCGGCGGAGGCGGCGGCGGGGAGGAGGTGGCGGCTGGCGGACGAGAGGTGCGACCTGC GCGCGGCGGAGACGGAGTACGTGAGGCGGTTCCACCGCCACGAGCCCCGCGACCACCAGT GCTCCTCCGCCGTCGCCAAGCACATCAAGGCCCCCGTCCACCTGGTTTGGTCTCTGGTGA GGCGTTTTGATCAGCCACAGCTTTTCAAGCCATTTGTGAGCCGGTGTGAGATGAAAGGGA ACATTGAGATTGGCAGTGTAAGGGAGGTTAATGTTAAGTCTGGCCTGCCTGCCACAAGAA GCACTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGG GAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCG ACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG CAGAGGTTTCTGAACGCCTGGTTGTCAAGGACCAAACCGAGCCCCTCGACCGGTGATTGT TGCCAAGATTCCAAGAGCTATTTTGTGTTGCAAATGCTTAATTAGATTGTGCAGAGTTGC TATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAG AGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTCAAACCAAAAGAGAAGAAA AAAAAATATTGTGCCTCCTCTTTGAGCCTCTGTTGCTGTTCTTTACCACCCTAGTATGTC ACAAGGGCCTAAAAAAAATATTGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)