These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1216 fasta sequence [AAAGCCAGCCCACCACTCCAGCCATGTGGCGCCGCGCCTCCCACCTCCTCCGCGCCACCGCCACCGCCACCGCCACCGCGGTCTCCCGCCGCGTCCCTCACCCACATCCCGCCCCCGCAACCGCAATCTCCACC-GTTCTGCCCGCCCCAAAGCTCGCCTCATCCTTATCCTACGCCACCCAAGCCGCGGCGGCGGCGGCCGTGCCGGCGGCGAGGGCCCCGAGAACGGTGGGGAGTCTGCTGCGGCTCAACGACCTGAGGGACAATCCGGGGGCGCGGAAGCAGAAGACCCGGAAGGGCCGAGGGATCGGCTCCGGGAAGGGCAAGACGGCTGGCCGCGGCCACAAGGGGCAGAAGGCGCGGGGCACCGCCAGATTCGGCTTCGAGGGCGGCCAGACCCCGCTCCGTCGCCGCCTCCCCCGTCGCGGCTTCAAGAACCGCTTCTCTCTGACGTTTCAGCCATGTGGTCTGGGGAAAATTGCAAAGCTCATCAACGCTGGAAAAATTGATTCCTCTGAATTGATCACAATGAAGACACTGAAGGATACAGGTGCTATTGGAAAACAAATAAAGGATGGAATTCGACTAATGGGCCGTGGAGCAGAGGAAATTAAATGGCCAATCCACCTTGAGGTATCAAGGACAACTGCTAGGGCAAAAGCTGCAGTTGAAGCAGCTGGTGGAACGGTAAGACTGGTGTACTATAATAACCTTGGATTCAGGGCACTTCTCAAGCCCGAGTGGTTTGCAAAGAAAGGCCGACTTTTACCTAAAGCAGCAAGGCCCCCACCCAAGCAACGAGACAAGGTTGATAGCATTGGCCGCCTGCCTGCCCCAACAAAGCCGCTTCCCTTCACACCAGAAGAATTGGAATTTGCAGCAAAACGTGAAGCTGCTCGAGTGATTGCGTAGAAGGGAGCATGAAGATGCTCCTCTGAACTAGAGTTTTGAATTGGGCATGCACAAGAATCAACTGTCCTTTATTTGAAGGATCCCTTGGTAGCAAGTTCGGTATGTTTGCTTGTCA-TTTAGACCAGTATGTCA-TTTTTCTTT-ACCCGTAGTCACATCACCAACACGTGAG-CCGGACAGCACTGCTATACCTCTTGATCTAAAACTCAAAGATGCTCGTGTCGCGGTCAACAACTGCTGTGAGTCCAGCATTTGGATTATTTTAGATATATATTTAGTTCTGATATCATAGTTGTGCATTAAAAAAA] [+] EMBL AK073645 [AAAGCCAGCCCACCACTCCAGCCATGTGGCGCCGCGCCTCCCACCTCCTCCGCGCCACCGCCACCGCCACCGCCACCGCGGTCTCCCGCCGCGTCCCTCACCCACATCCCGCCCCCGCAACCGCAATCTCCACC GTTCTGCCCGCCCCAAAGCTCGCCTCATCCTTATCCTACGCCACCCAAGCCGCGGCGGCGGCGGCCGTGCCGGCGGCGAGGGCCCCGAGAACGGTGGGGAGTCTGCTGCGGCTCAACGACCTGAGGGACAATCCGGGGGCGCGGAAGCAGAAGACCCGGAAGGGCCGAGGGATCGGCTCCGGGAAGGGCAAGACGGCTGGCCGCGGCCACAAGGGGCAGAAGGCGCGGGGCACCGCCAGATTCGGCTTCGAGGGCGGCCAGACCCCGCTCCGTCGCCGCCTCCCCCGTCGCGGCTTCAAGAACCGCTTCTCTCTGACGTTTCAGCCATGTGGTCTGGGGAAAATTGCAAAGCTCATCAACGCTGGAAAAATTGATTCCTCTGAATTGATCACAATGAAGACACTGAAGGATACAGGTGCTATTGGAAAACAAATAAAGGATGGAATTCGACTAATGGGCCGTGGAGCAGAGGAAATTAAATGGCCAATCCACCTTGAGGTATCAAGGACAACTGCTAGGGCAAAAGCTGCAGTTGAAGCAGCTGGTGGAACGGTAAGACTGGTGTACTATAATAACCTTGGATTCAGGGCACTTCTCAAGCCCGAGTGGTTTGCAAAGAAAGGCCGACTTTTACCTAAAGCAGCAAGGCCCCCACCCAAGCAACGAGACAAGGTTGATAGCATTGGCCGCCTGCCTGCCCCAACAAAGCCGCTTCCCTTCACACCAGAAGAATTGGAATTTGCAGCAAAACGTGAAGCTGCTCGAGTGATTGCGTAGAAGGGAGCATGAAGATGCTCCTCTGAACTAGAGTTTTGAATTGGGCATGCACAAGAATCAACTGTCCTTTATTTGAAGGATCCCTTGGTAGCAAGTTCGGTATGTTTGCTTGTCA TTTAGACCAGTATGTCA TTTTTCTTT ACCCGTAGTCACATCACCAACACGTGAG CCAGACAGCACTGCTATACCTCTTGATCTAAAACTCAAAGATGCTCGTGTCGCGGTCAACAACTGCTGTGAGTCCAGCATTTGGATTATTTTAGATATATATTTAG ] [+] EMBL CB656496 [ ATCTCCACCAGTTCTGCCCGCCCCAAAGCTCGCCTCATCCTTATCCTACGCCACCCAAGCCGCGGCGGCGGCGGCCGTGCCGGCGGCGAGGGCCCCGAGAACGGTGGGGAGTCTGCTGCGGCTCAACGACCTGAGGGACAATCCGGGGGCGCGGAAGCAGAAGACCCGGAAGGGCCGAGGGATCGGCTCCGGGAAGGGCAAGACGGCTGGCCGCGGCCACAAGGGGCAGAAGGCGCGGGGCACCGCCAGATTCGGCTTCGAGGGCGGCCAGACCCCGCTCCGTCGCCGCCTCCCCCGTCGCGGCTTCAAGAACCGCTTCTCTCTGACGTTTCAGCCATGTGGTCTGGGGAAAATTGCAAAGCTCATCAACGCTGGAAAAATTGATTCCTCTGAATTGATCACAATGAAGACACTGAAGGATACAGGTGCTATTGGAAAACAAATAAAGGATGGAATTCGACTAATGGGCCGTGGAGCAGAGGAAATTAAATGGCCAATCCACCTTGAGGTATCAAGGACAACTGCTAGGGCAAAAGCTGCAGTTGAAGCAGCTGGTGGAACGGTAAGACTGGTGTACTATAATAACCTTGGATTCAGGGCACTTCTCAAGCCCGAGTGGTTTGCAAAGAAAGGCCGACTTTTACCTAAAGCAGCAAGGCCCCCACCCAAGCAACGAGACAAGGTTGATAGCATTGGCCGCCTGCCTGCCCCAACAAAGCCGCTT ] [+] EMBL CA767114 [ GCGGGGCACCGCCAGATTCGGCTTCGAGGGCGGCCAGACCCCGCTCCGTCGCCGCCTCCCCCGTCGCGGCTTCAAGAACCGCTTCTCTCTGACGTTTCAGCCATGTGGTCTGGGGAAAATTGCAAAGCTCATCAACGCTGGAAAAATTGATTCCTCTGAATTGATCACAATGAAGACACTGAAGGATACAGGTGCTATTGGAAAACAAATAAAGGATGGAATTCGACTAATGGGCCGTGGAGCAGAGGAAATTAAATGGCCAATCCACCTTGAGGTATCAAGGACAACTGCTAGGGCAAAAGCTGCAGTTGAAGCAGCTGGTGGAACGGTAAGACTGGTGTACTATAATAACCTTGGATTCAGGGCACTTCTCAAGCCCGAGTGGTTTGCAAAGAAAGGCCGACTTTTACCTAAAGCAGCAAGGCCCCCACCCAAGCAACGAGACAAGGTTGATAGCATTGGCCGCCTGCCTGCCCCAACAAAGCCGCTTCCCTTCACACCAGAAGAATTGGAATTTGCAGCAAAACGTGAAGCTGCTCGAGTGATTGCGTAGAAGGGAGCATGAAGATGCTCCTCTGAACTAGAGTTTTGAATTGGGCATGCACAAGAATCAACTGTCCTTTATTTGAANGATCCCTTGGTAGCAAGNTCGGTATGNTTGCTTGNCATTTTANACCAGTATGTCATTTTTTCTTTAACCCGTAGTCACATCACCAACACGTGAGCCCGGA ] [+] EMBL BQ907725 [ CGACTAATGGCCCGTGGA CAGAGGAAATTAAAT GCC ATCCACCTTGAGGTATCAAGGACAACTGCTAGGGC AAAGCTGCAGTTGAAGCAGCTGGTGGAACGGTAAGACTGGTGTACTATAATAACCTTGGATTCAGGGCACTTCTCAAGCCCGAGTGGTTTGCAAAGAAAGGCCGACTTTTACCTAAAGCAGCAAGGCCCCCACCCAAGCAACGAGACAAGGTTGATAGCATTGGCCGCCTGCCTGCCCCAAC AAGCCGCTTCCCTTCACACCAGAAGAATTGGAATTTGCAGCAAAACGTGAAGCTGCTCGAGTGATTGCGTAGAAGGGAGCATGAAGATGCTCCTCTGAACTAGAGTTTTGAATTGGGCATGCACAAGAATCAACTGTCCTTTATTTGAAGGATCCCTTGGTAGCAAGTTCGGTATGTTTGCTTGTCA TTTAGACCAGTATGTCA TTTTTCTTT ACCCGTAGTCACATCACCAACACGTGAG CCGGACAGCACTGCTATACCTCTTGATCTAAAACTCAAAGATGCTCGTGTC CGGTCAACAACTGCTGTGAGTCCAGCATTTGGATTATTTTAGATATATATTTAGTTCTGATATCATAGTTGTGCATTAAAAAAA] [+] EMBL CA305809 [ ACCTTGGATTCAGGGCACTTCTCAAGCCCGAGTGGTTTGCAAAGAAAGGCCGACTTTTACCTAAAGCAGCAAGGCCCCCACCCAAGCAACGAGACAAGGTTGATAGCATTGGCCGCCTGCCTGCCCCAACAAAGCCGCTTCCCTTCACACCAGAAGAATTGGAATTTGCAGCAAAACGTGAAGCTGCTCGAGTGATTGCGTAGAAGGGAGCATGAAGATGCTCCTCTGAACTAGAGTTTTGAATTGGGCATGCACAAGAATCAACTGTCCTTTATTTGAAGGATCCCTTGGTAGCAAGTTCGGTATGTTTGCTTGTCA TTTAGACCAGTATGTCA TTTTTCTTT ACCCGTAGTCACATCACCAACACGTGAG CCGGACAGCACTGCTATACCTCTTGATCTAAAACTCAAAGATGCTCGTGTCGCGGTCAACAACTGCTGTGAGTNCAGCATTTGGATTATTTTAGAT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||