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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1051 fasta sequence
[TCCTCGGTCCTCCCTCGAGCTAGAGCCATGGCTGCCCTGGCCCTGGGCGCCGCCGCCACCTGGCCGGAG--CATNCGTCCTGTGCCTCCTCTTCATCCTCGCCGCCGCCATGCTCGTCGCCCTCCACTCCCTCCCCCGCCGCGCCGCCCACCGCCTCCGCCGCGCCTCCTCCGCCGGCTCCTCCTCCGCCGCCGCCGCGCAGTCTCGCCGCCACTTCGCGCAGGGCGCCCAGCTCCTCGCCCGCGCGCGCGCCGCCGCCGCGGGCGGGAACCAAGAAGCCACCCGGCCCGCTCGCTCGCGCGGCGCTCGCCGAGGCCGACCGCGCCATCGCCCTCGACCCGCGCGACGCCGCCCCGCTCATCCTCAAGGCCCTCGCCCTCGACCTCCAGGGCCACCGCCTCCCCGCGCTGCGCGCCCTCGACGCCGCCCTCGCCCCGCCGCTCGCGCGCTCCCTCGAGCCACGGGAGCGCGGGGACGCCCTCGCGAAGCGCGCCGAGATCGCGCTCGCGCTCCACCGCCGCCACCGACGCCGCCTCGACCAGGCCGCCGACGACCTCGCCGAGGCCGTCCGCCTCAGCCCCCAGAACGCCCGCGCGCACGCGCTGCTCGGCGAGTGCTACGAGCGGAAGGGCATGGCCGCGGAGGCCCTGGACGCCTTCAAGACCGCCGCCTCCATCGACCCGTCGCTCGCCGCCGCGCGCGACGCTCTCCGCCGGACCGAAGGGAGCGATGATGGCGTCGAGAGTGACAGTGACTGATGAACTTGCTGATGGGTGAACATTTCTAACTCTTGTTGTGTATCTCGGGTGGAATGAACAACCGTCTTGATGGCAACAATGGTAAATGTGTAATATTATAAGGTTTTTTGTGGTTGGTTACCTTCAAACATTGTTACTTACCTCGCTCCATTGTTGTATATTAGTGGATATGCGGATTTAGTAGAATGGAAAATACCCAGTTTACATACTATTCAGGTGATGGTATGCCTGTGGATTTAGTTCAGATATGCTATATCTGTATCTTTTGGATTTGCCCCCATTATAGTTGTTCTGT]
[+] EMBL AK066727 [TCCTCGGTCCTCCCTCGAGCTAGAGCCATGGCTGCCCTGGCCCTGGGCGCCGCCGCCACCTGGCCGGAG CATNCGTCCTGTGCCTCCTCTTCATCCTCGCCGCCGCCATGCTCGTCGCCCTCCACTCCCTCCCCCGCCGCGCCGCCCACCGCCTCCGCCGCGCCTCCTCCGCCGGCTCCTCCTCCGCCGCCGCCGCGCAGTCTCGCCGCCACTTCGCGCAGGGCGCCCAGCTCCTCGCCCGCGCGCGCGCCGCCGCCGCGGGCGGGAACCAAGAAGCCACCCGGCCCGCTCGCTCGCGCGGCGCTCGCCGAGGCCGACCGCGCCATCGCCCTCGACCCGCGCGACGCCGCCCCGCTCATCCTCAAGGCCCTCGCCCTCGACCTCCAGGGCCACCGCCTCCCCGCGCTGCGCGCCCTCGACGCCGCCCTCGCCCCGCCGCTCGCGCGCTCCCTCGAGCCACGGGAGCGCGGGGACGCCCTCGCGAAGCGCGCCGAGATCGCGCTCGCGCTCCACCGCCGCCACCGACGCCGCCTCGACCAGGCCGCCGACGACCTCGCCGAGGCCGTCCGCCTCAGCCCCCAGAACGCCCGCGCGCACGCGCTGCTCGGCGAGTGCTACGAGCGGAAGGGCATGGCCGCGGAGGCCCTGGACGCCTTCAAGACCGCCGCCTCCATCGACCCGTCGCTCGCCGCCGCGCGCGACGCTCTCCGCCGGACCGAAGGGAGCGATGATGGCGTCGAGAGTGACAGTGACTGATGAACTTGCTGATGGGTGAACATTTCTAACTCTTGTTGTGTATCTCGGGTGGAATGAACAACCGTCTTGATGGCAACAATGGTAAATGTGTAATATTATAAGGTTTTTTGTGGTTGGTTACCTTCAAACATTGTTACTTACCTCGCTCCATTGTTGTATATTAGTGGATATGCGGATTTAGTAGAATGGAAAATACCCAGTTTACATACTATTCAGGTGATGGTATGCCTGTGGATTTAGTTCAGATATGCTATATCTGTATCTTTTGGATTTGCCCCCATTATAGTTGTTCTGT]
[+] EMBL AU183257 [ ACCTGGCCGGAGGCCAT CGTCCTGTGCCTCCTCTTCATCCTCGCCGCCGCCATGCTCGTCGCCCTCCACTCCCTCCCCCGCCGCGCCGCCCACCGCCTCCGCCGCGCCTCCTCCGCCGGCTCCTCCTCCGCCGCCGCCGCGCAGTCTCGCCGCCACTTCGCGCAGGGCGCCCAGCTCCTCGCCCGCGCGCGCGCCGCCGCCGCGGGCGGG ACCAAGAAGCCACCCGGCCCGCTCGCTCGCGCGGCGCTCGCCGAGGCCGACCGCGCCATCGCCCTCGACCCGCGCGACGCCGCCCCGCTCATCCTCAAGGCCCTCGCCCTCGACCTCCAGGGCCACCGCCTCCCCGCGCTGCGCGCCCTCGACGCCGCCCTCGCCCCGCCGNTCGCGCGCTCCCTCGAGCCACGGGAGCGCGGGGACGCCCTCGCGAA ]
consensusID : consensus_8748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 378 fasta sequence
[ACCCGTCGCTCGCCGCCGCGCGCGACGCTTTCCGCCGGACCGAAGGGAGCGATGATGGCGTCGANAGTGACAGTGACTGATGAACTTGCTGATGGGTGAACATTTCTAACTCTTGTTGTGTATCTCGGGTGGAATGAACANCCGTNTTGATGGCAACAATGGTAAATGTGTAATATTATAAGGTTTTTTGTGGTTGGTTACCTTCAAACATTGTTACTTACCTCGCTCCATTGTTGTA-TATTAGTGGATATGCGGATTTAGTAGAATGGAAAATACCCAGTTTACATACTATTCAGGTGATGGTATGCCTGTGGATTTAGTTCAGATATGCTATATCTGTATCTTTTGGATTTGCCCCCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU183256 [ACCCGTCGCTCGCCGCCGCGCGCGACGCTTTCCGCCGGACCGAAGGGAGCGATGATGGCGTCGANAGTGACAGTGACTGATGAACTTGCTGATGGGTGAACATTTCTAACTCTTGTTGTGTATCTCGGGTGGAATGAACANCCGTNTTGATGGCAACAATGGTAAATGTGTAATATTATAAGGTTTTTTGTGGTTGGTTACCTTCAAACATTGTTACTTACCTCGCTCCATTGTTGTA TATTAGTGGATATGCGGATTTAGTAGAATGGAAAATACCCAGTTTACATACTATTCAGGTGATGGTATGCCTGTGGATTTAGTTCAGATATGCTATATCTGTATCTTTTGGATTTGCCCCCAAAAAAAAAAAAAAAAAAA]
[+] EMBL BM037927 [ TCCATTGTTGTATTATTAGTGGATATGCGGATTTAGTAGAATGGAAAATACCCAGTTTACATACTATTCAGGTGATGGTATGCCTGTGGATTTAGTTCAGATATGCTATATCTGTATCTTTTGGATTaaaaa ]
[+] EMBL C28793 [ AATACCCAGTTTACATACTATTCAGGTGATGGTATGCCTGTGGATTTAGTTCAGATATGCTATATCTGTATC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8748#0 TCCTCGGTCCTCCCTCGAGCTAGAGCCATGGCTGCCCTGGCCCTGGGCGCCGCCGCCACC 60
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 TGGCCGGAGCATNCGTCCTGTGCCTCCTCTTCATCCTCGCCGCCGCCATGCTCGTCGCCC 120
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 TCCACTCCCTCCCCCGCCGCGCCGCCCACCGCCTCCGCCGCGCCTCCTCCGCCGGCTCCT 180
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 CCTCCGCCGCCGCCGCGCAGTCTCGCCGCCACTTCGCGCAGGGCGCCCAGCTCCTCGCCC 240
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 GCGCGCGCGCCGCCGCCGCGGGCGGGAACCAAGAAGCCACCCGGCCCGCTCGCTCGCGCG 300
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 GCGCTCGCCGAGGCCGACCGCGCCATCGCCCTCGACCCGCGCGACGCCGCCCCGCTCATC 360
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 CTCAAGGCCCTCGCCCTCGACCTCCAGGGCCACCGCCTCCCCGCGCTGCGCGCCCTCGAC 420
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 GCCGCCCTCGCCCCGCCGCTCGCGCGCTCCCTCGAGCCACGGGAGCGCGGGGACGCCCTC 480
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 GCGAAGCGCGCCGAGATCGCGCTCGCGCTCCACCGCCGCCACCGACGCCGCCTCGACCAG 540
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 GCCGCCGACGACCTCGCCGAGGCCGTCCGCCTCAGCCCCCAGAACGCCCGCGCGCACGCG 600
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 CTGCTCGGCGAGTGCTACGAGCGGAAGGGCATGGCCGCGGAGGCCCTGGACGCCTTCAAG 660
consensus_8748#1 ------------------------------------------------------------
consensus_8748#0 ACCGCCGCCTCCATCGACCCGTCGCTCGCCGCCGCGCGCGACGCTCTCCGCCGGACCGAA 720
consensus_8748#1 ----------------ACCCGTCGCTCGCCGCCGCGCGCGACGCTTTCCGCCGGACCGAA 44
***************************** **************
consensus_8748#0 GGGAGCGATGATGGCGTCGAGAGTGACAGTGACTGATGAACTTGCTGATGGGTGAACATT 780
consensus_8748#1 GGGAGCGATGATGGCGTCGANAGTGACAGTGACTGATGAACTTGCTGATGGGTGAACATT 104
******************** ***************************************
consensus_8748#0 TCTAACTCTTGTTGTGTATCTCGGGTGGAATGAACAACCGTCTTGATGGCAACAATGGTA 840
consensus_8748#1 TCTAACTCTTGTTGTGTATCTCGGGTGGAATGAACANCCGTNTTGATGGCAACAATGGTA 164
************************************ **** ******************
consensus_8748#0 AATGTGTAATATTATAAGGTTTTTTGTGGTTGGTTACCTTCAAACATTGTTACTTACCTC 900
consensus_8748#1 AATGTGTAATATTATAAGGTTTTTTGTGGTTGGTTACCTTCAAACATTGTTACTTACCTC 224
************************************************************
consensus_8748#0 GCTCCATTGTTGTATATTAGTGGATATGCGGATTTAGTAGAATGGAAAATACCCAGTTTA 960
consensus_8748#1 GCTCCATTGTTGTATATTAGTGGATATGCGGATTTAGTAGAATGGAAAATACCCAGTTTA 284
************************************************************
consensus_8748#0 CATACTATTCAGGTGATGGTATGCCTGTGGATTTAGTTCAGATATGCTATATCTGTATCT 1020
consensus_8748#1 CATACTATTCAGGTGATGGTATGCCTGTGGATTTAGTTCAGATATGCTATATCTGTATCT 344
************************************************************
consensus_8748#0 TTTGGATTTGCCCCCATTATAGTTGTTCTGT--- 1051
consensus_8748#1 TTTGGATTTGCCCCCAAAAAAAAAAAAAAAAAAA 378
**************** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||