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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2157 fasta sequence
[CCCCACCCCCGCCGCTTCACTTCTCCCCTCTCGGTCTCTCCGTTCACGGCCGGCCGTGCGTCCCCGGCTAGGCCGGCGAGGGTGGCAGCGCGTCCCCGGTCGACGAGGGGTCGCATCCCACTCCATCTACGAGGCCCTGTACGTCCACGTCCATCCAGGCATCCACTGCGCTGACCAGTACATCCTCGTCAAGCTGTGCAGCAAGGCTCCCCAGTCCCCGATCAAGAAGCAACTGAGCAGGGTGAGGAATATGCGGCGCTTGAGCTTAGGCAATAGGGAGGCTTCCAATTGTTCAGATCAGGCAGTGAGTGGTGCTACCTTGCCCAGATGCAGTACAAGGTCCTCATGTTCCCAACAACCTAATCATTCTCCTAATTTGGATGAGGAGATTTTGGAGGAGGAAGAAACATCTGAGGAAATCTGGTTTCGTGGTCCTACACGTGTGCCACCACAACCTACCCGAGAGGAGGACAAACCTGTGCTGACTCCAGTAGGAGACAGGCAATGGCGAGCAAATGATTATGGAGGCAACATTAGGGTCCCCAATAGCATCCTGACATTACTTCTTAAACAATGGTTCCCTGGCATTGTCACATTGAAGGGTAAAGAGGAGCCAGCATGGAGTTGGAAACATTACAGGATAGCGCCGGATACTCCAAGAAGCAATCAAATACGGCTGCCAAGCTGTCTCCATCGTGTTGAGGAAGACTTCTGGCTTTACTTCAGGTGGGCAGAGGGAAAAGAACAAGAAGCTAGAAAGGTTGTCCACAATTGTGTCAAGGGCCTTGTTGATCGCTTGTTTTATGAAACTCGCATCCTAGCTGTGCTTAATTACCAAAGGAAAATCCTGAAGGTGAACACTTCCAGAGAAATCGCATGCAGAACTTATCTTACAGAGAGCGAGTACCTAAAGGTAGAACCATGGTGGTTCCTGAATTCAGAAAATGCATGGCGGGAGTTGATACGATTGCGGTGGTGTAATCCAAAATGGCAGGCTGTCTCACGTGCTCATAGGATACGGAGGGAGAAAATGAAAGGGCCATCTCACCGCCAAGGCAGTGCTAACTTGAGCCGTTACCAAAAAAATTTGGAGAAGAAGAAAAAGCGGCCAGTTGCTCCACTAGAGGCCTACACAGAAGGAAGGAGGGAAAATCGAGAGGATGGACAATTCAGCTGTGACCCGCGTGTAGCTGAGAAGCTTGAGGCCTATGCTGCAGCTTATGTTCAGTTGCATGGGCCAGAAAATGATTGGCGCACTTCTCCCATTGATCCTGTCGCTGTGCACATGGCTGGTGGTGGAAAGAAACATGGCCGTTTCATGATTGGTGATGGACTCATTGACTCATCAGCAGTGTTTGGTGATAATTCGCGTGATGATCAACGCCCTCGCAGAAGATTGAGGACAGATCATGACAACACAAACCAGGTTGAAGACCTTCTGCGGCAACTACAAGAGGAGCGCGAGGCAAGGGAGCGAGAGCGTGAAGAGAGGGAGCGTGAGAAGGAGAGGGAGCGGCAGGAGAAGGAGCAGGAGAAGGAGTGTGAGCGTGAAGAGAGGGCGCGAGAGAAGGAGCAGGAGCGTAAGGAGAGGGAGGAAGAGCGCAAGGAGAGGGAGTTGGAAAAGATAGCCTCTCAACAGAAATCAGCATTCTTTGAAGCTGCTTTAAGGGTGATACAAAGTAAGCTGAACATAGACTTGTCAGCTTCAGGCACACCTCCCTTACCTGTCATGTTGACTCACCTAGCTTCGTCTGGACC-TGTGGCTTCGAATGGAAACTCAGGCCCCAACCATGTTGGGGTTGGTGCTGCATCTGGTGCAATTGTCAACTTTTAGCATGACAGCGGACTAGTTGTACATTCCTAAAACTATGGATATATTTTGTAACTAAACTGACCTGGATGGTCATGGCCATGAACTTGGATAGCTGTTGGTTGTGGTTGTCTCACTAAGTAGTCTTTTGTTAATTATGTAGGTTTACCTGAACTTTAGGCCACATGGAACTCTAGTAGATGTTCGCTGTGTCTGTTGCCTTAGGTTGGCTGCCTGTTGCCTTTTGGTCATATATGTTGCCATGTTGGCATGCGCTGGAACTTGTGAACTGGAAGTTCGGTTCTTTTGGTCATATATAAAAGCATGCACTGGAACTTGTGAACTGG]
[+] EMBL AK063411 [CCCCACCCCCGCCGCTTCACTTCTCCCCTCTCGGTCTCTCCGTTCACGGCCGGCCGTGCGTCCCCGGCTAGGCCGGCGAGGGTGGCAGCGCGTCCCCGGTCGACGAGGGGTCGCATCCCACTCCATCTACGAGGCCCTGTACGTCCACGTCCATCCAGGCATCCACTGCGCTGACCAGTACATCCTCGTCAAGCTGTGCAGCAAGGCTCCCCAGTCCCCGATCAAGAAGCAACTGAGCAGGGTGAGGAATATGCGGCGCTTGAGCTTAGGCAATAGGGAGGCTTCCAATTGTTCAGATCAGGCAGTGAGTGGTGCTACCTTGCCCAGATGCAGTACAAGGTCCTCATGTTCCCAACAACCTAATCATTCTCCTAATTTGGATGAGGAGATTTTGGAGGAGGAAGAAACATCTGAGGAAATCTGGTTTCGTGGTCCTACACGTGTGCCACCACAACCTACCCGAGAGGAGGACAAACCTGTGCTGACTCCAGTAGGAGACAGGCAATGGCGAGCAAATGATTATGGAGGCAACATTAGGGTCCCCAATAGCATCCTGACATTACTTCTTAAACAATGGTTCCCTGGCATTGTCACATTGAAGGGTAAAGAGGAGCCAGCATGGAGTTGGAAACATTACAGGATAGCGCCGGATACTCCAAGAAGCAATCAAATACGGCTGCCAAGCTGTCTCCATCGTGTTGAGGAAGACTTCTGGCTTTACTTCAGGTGGGCAGAGGGAAAAGAACAAGAAGCTAGAAAGGTTGTCCACAATTGTGTCAAGGGCCTTGTTGATCGCTTGTTTTATGAAACTCGCATCCTAGCTGTGCTTAATTACCAAAGGAAAATCCTGAAGGTGAACACTTCCAGAGAAATCGCATGCAGAACTTATCTTACAGAGAGCGAGTACCTAAAGGTAGAACCATGGTGGTTCCTGAATTCAGAAAATGCATGGCGGGAGTTGATACGATTGCGGTGGTGTAATCCAAAATGGCAGGCTGTCTCACGTGCTCATAGGATACGGAGGGAGAAAATGAAAGGGCCATCTCACCGCCAAGGCAGTGCTAACTTGAGCCGTTACCAAAAAAATTTGGAGAAGAAGAAAAAGCGGCCAGTTGCTCCACTAGAGGCCTACACAGAAGGAAGGAGGGAAAATCGAGAGGATGGACAATTCAGCTGTGACCCGCGTGTAGCTGAGAAGCTTGAGGCCTATGCTGCAGCTTATGTTCAGTTGCATGGGCCAGAAAATGATTGGCGCACTTCTCCCATTGATCCTGTCGCTGTGCACATGGCTGGTGGTGGAAAGAAACATGGCCGTTTCATGATTGGTGATGGACTCATTGACTCATCAGCAGTGTTTGGTGATAATTCGCGTGATGATCAACGCCCTCGCAGAAGATTGAGGACAGATCATGACAACACAAACCAGGTTGAAGACCTTCTGCGGCAACTACAAGAGGAGCGCGAGGCAAGGGAGCGAGAGCGTGAAGAGAGGGAGCGTGAGAAGGAGAGGGAGCGGCAGGAGAAGGAGCAGGAGAAGGAGTGTGAGCGTGAAGAGAGGGCGCGAGAGAAGGAGCAGGAGCGTAAGGAGAGGGAGGAAGAGCGCAAGGAGAGGGAGTTGGAAAAGATAGCCTCTCAACAGAAATCAGCATTCTTTGAAGCTGCTTTAAGGGTGATACAAAGTAAGCTGAACATAGACTTGTCAGCTTCAGGCACACCTCCCTTACCTGTCATGTTGACTCACCTAGCTTCGTCTGGACC TGTGGCTTCGAATGGAAACTCAGGCCCCAACCATGTTGGGGTTGGTGCTGCATCTGGTGCAATTGTCAACTTTTAGCATGACAGCGGACTAGTTGTACATTCCTAAAACTATGGATATATTTTGTAACTAAACTGACCTGGATGGTCATGGCCATGAACTTGGATAGCTGTTGGTTGTGGTTGTCTCACTAAGTAGTCTTTTGTTAATTATGTAGGTTTACCTGAACTTTAGGCCACATGGAACTCTAGTAGATGTTCGCTGTGTCTGTTGCCTTAGGTTGGCTGCCTGTTGCCTTTTGGTCATATATGTTGCCATGTTGGCATGCGCTGGAACTTGTGAACTGGAAGTTCGGTTCTTTTGGTCATATAT ]
[+] EMBL AU102037 [ GCAGGAGAAGGAGTGTGAGCGTGAAGAGAGGGCGCGAGAGAAGGAGCAGGAGCGTAAGGAGAGGGAGGAAGAGCGCAAGGAGAGGGAGTTGGAAAAGATAGCCTCTCAACAGAAATCAGCATTCTTTGAAGCTGCTTTAAGGGTGATACAAAGTAAGCTGAACATAGACTTGTCAGCTTCAGGCACACCTCCCTTACCTGTCATGTTGACTCACCTAGCTTCGTCTGGACC TGTGGCTTCGAATGGAAACTCAGGCCCCAACCATGTTGGGGTTGGTGCTGCATCTGGTGCAATTGTCAACTTTTAGCATGACAGCGGACTAGTTGTACATTCCTAAAACTATGGAT ]
[+] EMBL AU102038 [ CAGGAGAAGGAGTNTGAGCNTGAAGAGAGGGCGCGAGAGAAGGAGCAGGAGCGTAAGGAGAGGGAGGAAGAGCGCAAGGAGAGGGAGTTGGAAAAGATAGCCTCTCAACAGAAATCAGCATTCTTTGAAGCTGCTTTAAGGGTGATACAAAGTAAGCTGAACATAGACTTGTCAGCTTCAGGCACACCTCCCTTACCTGTCATGTTGACTCACCTAGCTTCGTCTGGACC TGTGGCTTCGAATGGAAACTCAGGCCCCAACCATGTTGGGGTTGGTGCTGCATCTGGTGCAATTGTCAACTTTTAGCATGACAGCGGACTAGTTGTACATTCCTAAAACTATGGATATATTTTGTAACTAAACTGACCTGGATGGTCATGGCCATGAACTTGGATAGCTGTTGGTTGTGGTTGTCTCACTAAGTAGTCTTTTGTTAATTATGTAGGTTTACCTGAACTTTAGGCCACATGGAACTCTAGTAGATGTTCGCTGTGTCTGTTGCCTTAGGTTGGCTGCCTGTTGCCTTTTGGTCATATATGTTGCCATGTTGGCATGCGCTGGAACTTGTGAACTGGAAGTTCGGTTCTTTTGGTCATAAAAAAAA ]
[-] EMBL D43260 [ ACCTTGT GCCCCGAATGGAAACTCAGGCCCC ACCATG TGGGGTTGNTGCTGCATCTGGTGCAATTGTCAACTTTTAGCATGACAGCGGACTAGTTGTACATNCCTAAAACTATGGATATATTTTGTAACTAAACTGACCTGGATGGNCATGGCCATGAACTTGGATAGCTGTTGGTTGTGGTTGTCTCACTAAGTAGTCTTTTGTTAATTATGTAGGTTTACCTGAACTTTAGGCCACATGGAACTCTAGTAGATGTTCGCTGTGTCTGTTGCCTTAGGTTGGCTGCCTGTTGCCTTTTGGTCATATATGTTGCCATGTTGGCATGCGCTGGAACTTGTGAACTGGAAGTTCGGTTCTTTTGGTCATATATGTTGGCATGCACTGGAACTTGTGAACTGG]
consensusID : consensus_8749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence
[CTGGATGGTCATGGCCATGAACTTGGATAGCTGTTGGTTGTGGTTGTCTCACTAAGTAGTCTTTTGTTAATTATGTAGGTTTACCTGAACTTTAGGCCACATGGAACTCTAGTAGATGTTCGCTGTGTCTGTTGCCTTAGGTTGGCTGCCTGTTGCCTTTTGGTCATATATGTTGCCATGTTGGCATGCGCTGGAAAAAAAAAAAAAAA]
[+] EMBL CF337532 [CTGGATGGTCATGGCCATGAACTTGGATAGCTGTTGGTTGTGGTTGTCTCACTAAGTAGTCTTTTGTTAATTATGTAGGTTTACCTGAACTTTAGGCCACATGGAACTCTAGTAGATGTTCGCTGTGTCTGTTGCCTTAGGTTGGCTGCCTGTTGCCTTTTGGTCATATATGTTGCCATGTTGGCATGCGCTGGAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8749#0 CCCCACCCCCGCCGCTTCACTTCTCCCCTCTCGGTCTCTCCGTTCACGGCCGGCCGTGCG 60
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 TCCCCGGCTAGGCCGGCGAGGGTGGCAGCGCGTCCCCGGTCGACGAGGGGTCGCATCCCA 120
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 CTCCATCTACGAGGCCCTGTACGTCCACGTCCATCCAGGCATCCACTGCGCTGACCAGTA 180
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 CATCCTCGTCAAGCTGTGCAGCAAGGCTCCCCAGTCCCCGATCAAGAAGCAACTGAGCAG 240
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GGTGAGGAATATGCGGCGCTTGAGCTTAGGCAATAGGGAGGCTTCCAATTGTTCAGATCA 300
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GGCAGTGAGTGGTGCTACCTTGCCCAGATGCAGTACAAGGTCCTCATGTTCCCAACAACC 360
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 TAATCATTCTCCTAATTTGGATGAGGAGATTTTGGAGGAGGAAGAAACATCTGAGGAAAT 420
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 CTGGTTTCGTGGTCCTACACGTGTGCCACCACAACCTACCCGAGAGGAGGACAAACCTGT 480
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GCTGACTCCAGTAGGAGACAGGCAATGGCGAGCAAATGATTATGGAGGCAACATTAGGGT 540
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 CCCCAATAGCATCCTGACATTACTTCTTAAACAATGGTTCCCTGGCATTGTCACATTGAA 600
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GGGTAAAGAGGAGCCAGCATGGAGTTGGAAACATTACAGGATAGCGCCGGATACTCCAAG 660
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 AAGCAATCAAATACGGCTGCCAAGCTGTCTCCATCGTGTTGAGGAAGACTTCTGGCTTTA 720
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 CTTCAGGTGGGCAGAGGGAAAAGAACAAGAAGCTAGAAAGGTTGTCCACAATTGTGTCAA 780
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GGGCCTTGTTGATCGCTTGTTTTATGAAACTCGCATCCTAGCTGTGCTTAATTACCAAAG 840
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GAAAATCCTGAAGGTGAACACTTCCAGAGAAATCGCATGCAGAACTTATCTTACAGAGAG 900
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 CGAGTACCTAAAGGTAGAACCATGGTGGTTCCTGAATTCAGAAAATGCATGGCGGGAGTT 960
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GATACGATTGCGGTGGTGTAATCCAAAATGGCAGGCTGTCTCACGTGCTCATAGGATACG 1020
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GAGGGAGAAAATGAAAGGGCCATCTCACCGCCAAGGCAGTGCTAACTTGAGCCGTTACCA 1080
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 AAAAAATTTGGAGAAGAAGAAAAAGCGGCCAGTTGCTCCACTAGAGGCCTACACAGAAGG 1140
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 AAGGAGGGAAAATCGAGAGGATGGACAATTCAGCTGTGACCCGCGTGTAGCTGAGAAGCT 1200
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 TGAGGCCTATGCTGCAGCTTATGTTCAGTTGCATGGGCCAGAAAATGATTGGCGCACTTC 1260
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 TCCCATTGATCCTGTCGCTGTGCACATGGCTGGTGGTGGAAAGAAACATGGCCGTTTCAT 1320
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GATTGGTGATGGACTCATTGACTCATCAGCAGTGTTTGGTGATAATTCGCGTGATGATCA 1380
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 ACGCCCTCGCAGAAGATTGAGGACAGATCATGACAACACAAACCAGGTTGAAGACCTTCT 1440
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GCGGCAACTACAAGAGGAGCGCGAGGCAAGGGAGCGAGAGCGTGAAGAGAGGGAGCGTGA 1500
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GAAGGAGAGGGAGCGGCAGGAGAAGGAGCAGGAGAAGGAGTGTGAGCGTGAAGAGAGGGC 1560
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 GCGAGAGAAGGAGCAGGAGCGTAAGGAGAGGGAGGAAGAGCGCAAGGAGAGGGAGTTGGA 1620
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 AAAGATAGCCTCTCAACAGAAATCAGCATTCTTTGAAGCTGCTTTAAGGGTGATACAAAG 1680
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 TAAGCTGAACATAGACTTGTCAGCTTCAGGCACACCTCCCTTACCTGTCATGTTGACTCA 1740
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 CCTAGCTTCGTCTGGACCTGTGGCTTCGAATGGAAACTCAGGCCCCAACCATGTTGGGGT 1800
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 TGGTGCTGCATCTGGTGCAATTGTCAACTTTTAGCATGACAGCGGACTAGTTGTACATTC 1860
consensus_8749#1 ------------------------------------------------------------
consensus_8749#0 CTAAAACTATGGATATATTTTGTAACTAAACTGACCTGGATGGTCATGGCCATGAACTTG 1920
consensus_8749#1 -----------------------------------CTGGATGGTCATGGCCATGAACTTG 25
*************************
consensus_8749#0 GATAGCTGTTGGTTGTGGTTGTCTCACTAAGTAGTCTTTTGTTAATTATGTAGGTTTACC 1980
consensus_8749#1 GATAGCTGTTGGTTGTGGTTGTCTCACTAAGTAGTCTTTTGTTAATTATGTAGGTTTACC 85
************************************************************
consensus_8749#0 TGAACTTTAGGCCACATGGAACTCTAGTAGATGTTCGCTGTGTCTGTTGCCTTAGGTTGG 2040
consensus_8749#1 TGAACTTTAGGCCACATGGAACTCTAGTAGATGTTCGCTGTGTCTGTTGCCTTAGGTTGG 145
************************************************************
consensus_8749#0 CTGCCTGTTGCCTTTTGGTCATATATGTTGCCATGTTGGCATGCGCTGGAACTTGTGAAC 2100
consensus_8749#1 CTGCCTGTTGCCTTTTGGTCATATATGTTGCCATGTTGGCATGCGCTGGAAAAAAAAAAA 205
*************************************************** **
consensus_8749#0 TGGAAGTTCGGTTCTTTTGGTCATATATAAAAGCATGCACTGGAACTTGTGAACTGG 2157
consensus_8749#1 AAAA----------------------------------------------------- 209
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||