These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1602 fasta sequence [ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGGATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCAATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGTTTGGATTTTTGG-TTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGA-TGTCGGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGCCGCGGCGAGAGCCG-GGAGTTCGCGTGGATCTACGACTACGAGGATGCGCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGCGCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCGTCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATTCCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGATCATACATATAATACTTGTCGGCTCAGGGGGAAAACATAAGTTATCTGCACAGTTTGGATTGAATTTTGGAATGAAGATAACCAAGGTCTCTTGCCAGTTTGCTCCTGCAGTGTCCCGTACTCCAGTGTGGCCACTTGCCTGCCAGTGGCGATGAAGAGGAAACAGTGTTAAGGCATGCAGTGCAGCAACAAGCTCGGCCGGTTTAAGAGTGATGACAAGCACGCGGTCCCTGCTGCGGTTTGTGCCCAGAATGGGACTGTGAGCATGGCCGGGACAGATAGTTTTGTTGGATTGGATGCACACTGCCGGCCGGCCTGCACCATCGCCGTCCCGTGTGTCACGGGCACTCGTACGTCGCCGGCCGTCGCCGTCACTGGCCCACCCGTCAGCGGCACACGGTGGGGTTGTTCTTGTTACAGTGGGAAGCTGGAAGAGTGTTGGCAAGAGAACAGTGAGGCTGGTTGTTGCTGGCTATGATGTTAACCTGACCTATTGCTACTGCTCCTGCTGCACACTGTGGCTCTCCAGTGACTCTCCAGTGAGCCCATCTCAACCTATCCGGTTTGTGCATGCGGTGCCATGGCCATTCTGGAGCTGAGTCCCAGGTTAAAGTGGTGTACCCATCCAATGTTGCTGCTGCTGTTCTTGATGTGCCTGTCCTGAAACATCACAAGTGAAGTCCAGTCAAGTTCTGTTCAGTGTCCCCCTATCTTCACGAGACGAGCTGGCGTTGCATTGCGAGAAGAGAGATGACAAACGGTGTGGCTCAAACTGGGAGCTCATCCCAAGCAAAAGCTCCATCTCAACCGATGGAAGCAGGCAAAGCATTTTAGCTCCTACTACTTCATTGTATCACGGTGAGGATTTTGGTTTTGTTTTGCATGATACAAAAGATTGCTGTTCATCGTTGCAGCAGTTGGGGGTAAGGTAGTAACTCCCCCGTCCCATAATATAACATTT] [+] EMBL AK106259 [ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGGATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCAATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGTTTGGATTTTTGGTTTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGA TGTCGGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGCCGCGGCGAGAGCCG GGAGTTCGCGTGGATCTACGACTACGAGGATGCGCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGCGCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCGTCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATTCCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGATCATACATATAATACTTGTCGGCTCAGGGGGAAAACATAAGTTATCTGCACAGTTTGGATTGAATTTTGGAATGAAGATAACCAAGGTCTCTTGCCAGTTTGCTCCTGCAGTGTCCCGTACTCCAGTGTGGCCACTTGCCTGCCAGTGGCGATGAAGAGGAAACAGTGTTAAGGCATGCAGTGCAGCAACAAGCTCGGCCGGTTTAAGAGTGATGACAAGCACGCGGTCCCTGCTGCGGTTTGTGCCCAGAATGGGACTGTGAGCATGGCCGGGACAGATAGTTTTGTTGGATTGGATGCACACTGCCGGCCGGCCTGCACCATCGCCGTCCCGTGTGTCACGGGCACTCGTACGTCGCCGGCCGTCGCCGTCACTGGCCCACCCGTCAGCGGCACACGGTGGGGTTGTTCTTGTTACAGTGGGAAGCTGGAAGAGTGTTGGCAAGAGAACAGTGAGGCTGGTTGTTGCTGGCTATGATGTTAACCTGACCTATTGCTACTGCTCCTGCTGCACACTGTGGCTCTCCAGTGACTCTCCAGTGAGCCCATCTCAACCTATCCGGTTTGTGCATGCGGTGCCATGGCCATTCTGGAGCTGAGTCCCAGGTTAAAGTGGTGTACCCATCCAATGTTGCTGCTGCTGTTCTTGATGTGCCTGTCCTGAAACATCACAAGTGAAGTCCAGTCAAGTTCTGTTCAGTGTCCCCCTATCTTCACGAGACGAGCTGGCGTTGCATTGCGAGAAGAGAGATGACAAACGGTGTGGCTCAAACTGGGAGCTCATCCCAAGCAAAAGCTCCATCTCAACCGATGGAAGCAGGCAAAGCATTTTAGCTCCTACTACTTCATTGTATCACGGTGAGGATTTTGGTTTTGTTTTGCATGATACAAAAGATTGCTGTTCATCGTTGCAGCAGTTGGGGGTAAGGTAGTAACTCCCCCGTCCCATAATATAACATTT] [+] EMBL C71677 [ GAATTTTNCCAATGATTCCTTCGGATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGANTTCGCCACCCAGTATCTCAATTTCNTTCGTGCGAGGCATCCGTNTTCGATTTGCGAAGGTGAATTTTNATCGGTTTGGTTTGGATTTTTGG TTTTTTTTTTCTCCATCAGATGGATGGATTGGNGCCGGCGG GATTGTCGGAGGCGCTGCTGGTCTTCGCNAGCGGNAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGNCGCGGCGAGAGCCGNGAAGTTCGCNTGGTTCTACGACT ] [+] EMBL CF337444 [ CCGATGATTCCTTCGGATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCAATTTCGTTCGTGCGAGGCATCCG GTTCGATTTGCGAAGGTGAATTTTGATCGG TTGGTTT GATTTTTGG TTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGA TGTCGGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGCCGCGGCGAGAGCCG GGAGTTCGCGTGGATCTACGACTACGAGGATGCGCCGATGAt ] consensusID : consensus_8750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1119 fasta sequence [ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGTATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCAATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGTTTGGATTTTTGGTTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGATGTCGGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGCCGCGGCGAGAGCCGGGAGTTCGCGTGGATCTACGACTACGAGGATGCGCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGCGCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCGTCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATTCCGATCAGGGGGCGCTACCTGTGTAATGTTAAAATGGTGGCTTGGAGGGGCAGGACAATGCTCAGGGATTTCTCCAAGGTGAGGGTGCAGGAGACTGAAGAAAAACAGGGTTTGGGAATTGGTTATTGGGTTGATGCACTGCAACAGAAGCTGCATTTCTCGATTCCGCTGGTGAGGGAAGGGGATGGGTCGATAGAGGTTGTTGCAGACAACAATGGATGGAGCTTCATGGGTGAGGATGTGGTTGCGCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGGTAACATTTTACAGTTCGTTCCATGTAAACCTTATACCTTAAATAGGGCTAATAGTTTACAATCAATTTAGTAGGTTTAATGATGATCTTTACACACTTCTGTATAAGCAACAAAAGTATTAGATTATAGCATACCATGTTCCTTGTGTACTTATTATTGATTTAACTTCAGAGCCTATGAATTTAACTTGTAAGCAAGATAAGTCACTTTTCCAATCTGTACACTTGTTG] [+] EMBL AK106659 [ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGTATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCAATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGTTTGGATTTTTGGTTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGATGTCGGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGCCGCGGCGAGAGCCGGGAGTTCGCGTGGATCTACGACTACGAGGATGCGCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGCGCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCGTCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATTCCGATCAGGGGGCGCTACCTGTGTAATGTTAAAATGGTGGCTTGGAGGGGCAGGACAATGCTCAGGGATTTCTCCAAGGTGAGGGTGCAGGAGACTGAAGAAAAACAGGGTTTGGGAATTGGTTATTGGGTTGATGCACTGCAACAGAAGCTGCATTTCTCGATTCCGCTGGTGAGGGAAGGGGATGGGTCGATAGAGGTTGTTGCAGACAACAATGGATGGAGCTTCATGGGTGAGGATGTGGTTGCGCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGGTAACATTTTACAGTTCGTTCCATGTAAACCTTATACCTTAAATAGGGCTAATAGTTTACAATCAATTTAGTAGGTTTAATGATGATCTTTACACACTTCTGTATAAGCAACAAAAGTATTAGATTATAGCATACCATGTTCCTTGTGTACTTATTATTGATTTAACTTCAGAGCCTATGAATTTAACTTGTAAGCAAGATAAGTCACTTTTCCAATCTGTACACTTGTTG] [-] EMBL CF317983 [ GGATGCGCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGCGCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCGTCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATTCCGATCAGGGGGCGCTACCTGTGTAATGTTAAAATGGTGGCTTGGAGGGGCAGGACAATGCTCAGGGATTTCTCCAAGGTGAGGGTGCAGGAGACTGAAGAAAAACAGGGTTTGGGAATTGGTTATCGGGTTGATGCACTGCAACAGAAGCTGCATTTCTCGATTCCGCTGGTGAGGGAAGGGGATGGGTCGATAGAGGTTGTTGCAGACAACAATGGATGGAGCTTCATGGGTGAGGATGTGGTTGCGCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGGTAACATTTTACAGTTCGTTCCATGTAAACCTTATACCTTAAATAGGGCTAATAGTTTACAATCAAaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8750#0 ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGGATTCGCGTTTCGGGGCTGACGAAA 60 consensus_8750#1 ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGTATTCGCGTTTCGGGGCTGACGAAA 60 *********************************** ************************ consensus_8750#0 CCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCA 120 consensus_8750#1 CCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCA 120 ************************************************************ consensus_8750#0 ATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGT 180 consensus_8750#1 ATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGT 180 ************************************************************ consensus_8750#0 TTGGATTTTTGGTTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGATGTC 240 consensus_8750#1 TTGGATTTTTGGTTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGATGTC 240 ************************************************************ consensus_8750#0 GGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACG 300 consensus_8750#1 GGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACG 300 ************************************************************ consensus_8750#0 ACCTCATCTTCGCCGCGGCGAGAGCCGGGAGTTCGCGTGGATCTACGACTACGAGGATGC 360 consensus_8750#1 ACCTCATCTTCGCCGCGGCGAGAGCCGGGAGTTCGCGTGGATCTACGACTACGAGGATGC 360 ************************************************************ consensus_8750#0 GCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGC 420 consensus_8750#1 GCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGC 420 ************************************************************ consensus_8750#0 GCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCG 480 consensus_8750#1 GCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCG 480 ************************************************************ consensus_8750#0 TCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATT 540 consensus_8750#1 TCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATT 540 ************************************************************ consensus_8750#0 CCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCT 600 consensus_8750#1 CCGATCAGGG------------------------------------GGCGCTACCTGTGT 564 ********** * ** **** * * consensus_8750#0 CAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGATCATACATATAATACTTGT 660 consensus_8750#1 AATGTTAAAATGGTG----------------GCTTGGAGGGGCA---GGACAAT------ 599 * * ** ** * ** * ** * ** * *** consensus_8750#0 CGGCTCAGGGGGAAAACATAAGTTATCTGCACAGTTTGGATTGAATTTTGGAATGAAGAT 720 consensus_8750#1 --GCTCAGGGA------------TTTCTCCAAGGTGAGGGTGCAGG---AGACTGAAGAA 642 ******** * *** ** ** ** * * ** ****** consensus_8750#0 AACCAAGGTCTCTTGCCAGTTTGCTCCTGCAGTGTCCCGTACTCCAGTGTGGCCACTTGC 780 consensus_8750#1 AAACAGGGTTTGGGAATTGGTTATTGGGTTGATGCACTGCAACAGAAGCTGCATTTCTCG 702 ** ** *** * * ** * ** * * * * ** * consensus_8750#0 CTGCCAGTGGCGATGAAGAGGAAACAGT-GTTAAGGCATGCAGTGCAGCAACAAGCTCGG 839 consensus_8750#1 ATTCCGCTGGTGAGGGAAGGGGATGGGTCGATAGAGGTTGTTGCAGA-CAACAATGGATG 761 * ** *** ** * * ** * ** * ** * ** * * ****** * consensus_8750#0 CCGGTTTAAGAGTGATGACAAGCACGCGGTCCCTGCTGCGGTTTGTGCCCAGAATGGGAC 899 consensus_8750#1 GAGCTTCATGGGTGAGGATGTGGTTGCG---CGATCAGGGATATCGAGGAAGAGTAGGAT 818 * ** * * **** ** * *** * * * * * * *** * *** consensus_8750#0 TGTGAGCATGGCCGGGACAGATAGTTTTGTTGGATTGGATGCACACTGCCGGCCGGCCTG 959 consensus_8750#1 GTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGAT------GATTGGCTC- 871 ** * * * ** * * * * * ** * * * *** consensus_8750#0 CACCATCGCCGTCCCGTGTGTCACGGGCACTCGTACGTCGCCGGCCGTCGCCGTCACTGG 1019 consensus_8750#1 --TCCTCAGTGTTTCATAGGTAACATTTTACAGTTCGTTCCATGTAAACCTTATACCTTA 929 * ** ** * * ** ** ** *** * * * * ** consensus_8750#0 CCCACCCGTCAGCGGCACACGGTGGGGTTGTTCTTGTTACAGTGGGAAGCTGGAAGAGTG 1079 consensus_8750#1 AATAGG-GCTAATAGTTTACAATCAATTTAGTA--GGTTTAATGATGATCTTTACACACT 986 * * * * ** * ** * * * * ** * ** * consensus_8750#0 TTGGCAAGAG-AACAGTGAGGCTGG-TTGTTGCTGGCTATGATGTTAACCTGACCTATTG 1137 consensus_8750#1 TCTGTATAAGCAACAAAAGTATTAGATTATAGCATACCATGTTCCTTGTGT-ACTTATTA 1045 * * * ** **** * * ** * ** * *** * * * ** **** consensus_8750#0 CTACTGCTCCTGCTGCACACTGTGGCTCTCCAGTGACTCTCCAGTGAGCCCATCTCAACC 1197 consensus_8750#1 TTGATTTAACTTCAGAGC-CTATGAATTT-----AACTTGTAAGCAAGATAAGTC--ACT 1097 * * ** * * * ** ** * * *** ** ** * ** consensus_8750#0 TATCCGGTTTGTGCATGCGGTGCCATGGCCATTCTGGAGCTGAGTCCCAGGTTAAAGTGG 1257 consensus_8750#1 TTTCCAATCTGTACACTTGTTG-------------------------------------- 1119 * *** * *** ** * ** consensus_8750#0 TGTACCCATCCAATGTTGCTGCTGCTGTTCTTGATGTGCCTGTCCTGAAACATCACAAGT 1317 consensus_8750#1 ------------------------------------------------------------ consensus_8750#0 GAAGTCCAGTCAAGTTCTGTTCAGTGTCCCCCTATCTTCACGAGACGAGCTGGCGTTGCA 1377 consensus_8750#1 ------------------------------------------------------------ consensus_8750#0 TTGCGAGAAGAGAGATGACAAACGGTGTGGCTCAAACTGGGAGCTCATCCCAAGCAAAAG 1437 consensus_8750#1 ------------------------------------------------------------ consensus_8750#0 CTCCATCTCAACCGATGGAAGCAGGCAAAGCATTTTAGCTCCTACTACTTCATTGTATCA 1497 consensus_8750#1 ------------------------------------------------------------ consensus_8750#0 CGGTGAGGATTTTGGTTTTGTTTTGCATGATACAAAAGATTGCTGTTCATCGTTGCAGCA 1557 consensus_8750#1 ------------------------------------------------------------ consensus_8750#0 GTTGGGGGTAAGGTAGTAACTCCCCCGTCCCATAATATAACATTT 1602 consensus_8750#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||