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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 946 fasta sequence
[CTGCTCCCCCCATCGAATCGAATCGAATCGAATCGAATCCCCTCACGATTCCACCAATCCTCCGCCGCCGGAGGAGGAGGCCAGGGAATCGCCGCCGCCAATGTCGCTGCCGGTGGCGAAGCTG-GGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGCCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTA-TTTTTTC-GGTTGCTG-TTGCT-GC-TTTAATTTTTGA-GGTGCAAA-GAAATGCAAGGTCAGAGGC-TA-GGAAGG-AGGAAGCTCGTAAACA-GGAAC-TTGA-GGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACACCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTTAAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCAGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTTCTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTTGCTAACACATCACGCACATAGCTACGGCTGAACTGAATGCCTCCTTT]
[+] EMBL OSS5053A [CTGCTCCCCCCATCGAATCGAATCGAATCGAATCGAATCCCCTCACGATTCCACCAATNCTCCGCCGCCGGAGGAGGAGGCCAGGGAATCGCCGCCGCCAATGTCGCTGCCGGTGGCGAA NTGTNGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGCCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGGAAGCTGTACAAGCTGCTACGGATCTCATTGGGGAAGGCTTTATTTTTTTCGGGTTGCTGTTTGCTGGCTTTTAATTTTTGAGGGTGCAAAGGAAATGCAAGGTCAGAGGCTTAGGGANGGNAGGAAGCTCGTAAACAGGGANCTTTTAGGGAATTTNAAC ]
[+] EMBL AK070082 [ CCCCCCATCGAATCGAATCGAATCGAATCGAATCCCCTCACGATTCCACCAATCCTCCGCCGCCGGAGGAGGAGGCCAGGGAATCGCCGCCGCCAATGTCGCTGCCGGTGGCGAAGCTG GGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGCCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTA TTTTTTC GGTTGCTG TTGCT GC TTTAATTTTTGA GGTGCAAA GAAATGCAAGGTCAGAGGC TA GGAAGG AGGAAGCTCGTAAACA GGAAC TTGA GGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACACCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTTAAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCAGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTTCTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTTGCTAACACATCACGCACATAGCTACGGCTGAACTGAATGCCTCCTTT]
[+] EMBL CF303671 [ CGAATCGAATCCCCTCACGATTCCACCAATCCTCCGCCGCCGGAGGAGGAGGCCAGGGAATCGCCGCCGCCAATGTCGCTGCCGGTGGCGAAGCTG GGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGCCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTA TTTTTTC GGTTGCTG TTGCT GC TTTAATTTTTGA GGTGCAAA GAAATGCAAGGTCAGAGGC TA GGAAGG AGGAAGCTCGTAAACA GGAAC TTGA GGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCT ]
consensusID : consensus_8752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[CTGCATCGCGCAGTTANCCATCGTGTTACTACAAGGATACAAAGGCCCCATTTATGGGCATGCAACNGATGTGGAAATCACNCCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTTTTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCNCCTCGCTAAAGGACGAGGCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACNCCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTTAAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCAGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACNCCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTTCTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTTGCTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097466 [CTGCATCGCGCAGTTANCCATCGTGTTACTACAAGGATACAAAGGCCCCATTTATGGGCATGCAACNGATGTGGAAATCACNCCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTTTTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCNCCTCGCTAAAGGACGAGGCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACNCCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTTAAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCAGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACNCCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTTCTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTTGCTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8752#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence
[GAGGCCGCCGCCAATGTCACTGCCGGTGGCGAAGCTGGGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGGCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTTTTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACACCTGCTTGATCAATCAAATTAACTTGGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAG]
[+] EMBL CB000586 [GAGGCCGCCGCCAATGTCACTGCCGGTGGCGAAGCTGGGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGGCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTTTTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACACCTGCTTGATCAATCAAATTAACTTGGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8752#0 CTGCTCCCCCCATCGAATCGAATCGAATCGAATCGAATCCCCTCACGATTCCACCAATCC 60
consensus_8752#2 ------------------------------------------------------------
consensus_8752#1 ------------------------------------------------------------
consensus_8752#0 TCCGCCGCCGGAGGAGGAGGCCAGGGAATCGCCGCCGCCAATGTCGCTGCCGGTGGCGAA 120
consensus_8752#2 ---------------------------GAGGCCGCCGCCAATGTCACTGCCGGTGGCGAA 33
consensus_8752#1 ------------------------------------------------------------
consensus_8752#0 GCTGGGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGCCAGCCGCCTCAAGAACCA 180
consensus_8752#2 GCTGGGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGGCAGCCGCCTCAAGAACCA 93
consensus_8752#1 ------------------------------------------------------------
consensus_8752#0 GGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCG 240
consensus_8752#2 GGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCG 153
consensus_8752#1 ------------------------------------CTGCATCGCGCAG-TTANCCATCG 23
************* *** ******
consensus_8752#0 TGTTACTACAAGGATACAAAGGCGC-ATTTATGGGCATGCAACAGATGTGGAAATCACAC 299
consensus_8752#2 TGTTACTACAAGGATACAAAGGCGC-ATTTATGGGCATGCAACAGATGTGGAAATCACAC 212
consensus_8752#1 TGTTACTACAAGGATACAAAGGCCCCATTTATGGGCATGCAACNGATGTGGAAATCACNC 83
*********************** * ***************** ************** *
consensus_8752#0 CTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTT 359
consensus_8752#2 CTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTT 272
consensus_8752#1 CTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTT 143
************************************************************
consensus_8752#0 TTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTA 419
consensus_8752#2 TTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTA 332
consensus_8752#1 TTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTA 203
************************************************************
consensus_8752#0 GGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTAT 479
consensus_8752#2 GGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTAT 392
consensus_8752#1 GGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTAT 263
************************************************************
consensus_8752#0 CTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGAC 539
consensus_8752#2 CTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGAC 452
consensus_8752#1 CTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCNCCTCGCTAAAGGAC 323
********************************************* **************
consensus_8752#0 GAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAG 599
consensus_8752#2 GAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAG 512
consensus_8752#1 GAGGC-TTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAG 382
***** ******************************************************
consensus_8752#0 CAACACCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTT 659
consensus_8752#2 CAACACCTGCTTGATCAATCAAATTAACTTGG---------------------------- 544
consensus_8752#1 CAACNCCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTT 442
**** ***************************
consensus_8752#0 AAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCA 719
consensus_8752#2 ------------------------------------------------------------
consensus_8752#1 AAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCA 502
consensus_8752#0 GTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATA 779
consensus_8752#2 -TTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATA 603
consensus_8752#1 GTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATA 562
***********************************************************
consensus_8752#0 GACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTT 839
consensus_8752#2 GACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAG------- 656
consensus_8752#1 GACNCCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTT 622
*** *************************************************
consensus_8752#0 CTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTT 899
consensus_8752#2 ------------------------------------------------------------
consensus_8752#1 CTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTT 682
consensus_8752#0 GCTAACACATCACGCACATAGCTACGGCTGAACTGAATGCCTCCTTT 946
consensus_8752#2 -----------------------------------------------
consensus_8752#1 GCTAAAAAAAAAAAAAAAAAAAAAA---------------------- 707
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||