These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 946 fasta sequence [CTGCTCCCCCCATCGAATCGAATCGAATCGAATCGAATCCCCTCACGATTCCACCAATCCTCCGCCGCCGGAGGAGGAGGCCAGGGAATCGCCGCCGCCAATGTCGCTGCCGGTGGCGAAGCTG-GGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGCCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTA-TTTTTTC-GGTTGCTG-TTGCT-GC-TTTAATTTTTGA-GGTGCAAA-GAAATGCAAGGTCAGAGGC-TA-GGAAGG-AGGAAGCTCGTAAACA-GGAAC-TTGA-GGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACACCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTTAAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCAGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTTCTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTTGCTAACACATCACGCACATAGCTACGGCTGAACTGAATGCCTCCTTT] [+] EMBL OSS5053A [CTGCTCCCCCCATCGAATCGAATCGAATCGAATCGAATCCCCTCACGATTCCACCAATNCTCCGCCGCCGGAGGAGGAGGCCAGGGAATCGCCGCCGCCAATGTCGCTGCCGGTGGCGAA NTGTNGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGCCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGGAAGCTGTACAAGCTGCTACGGATCTCATTGGGGAAGGCTTTATTTTTTTCGGGTTGCTGTTTGCTGGCTTTTAATTTTTGAGGGTGCAAAGGAAATGCAAGGTCAGAGGCTTAGGGANGGNAGGAAGCTCGTAAACAGGGANCTTTTAGGGAATTTNAAC ] [+] EMBL AK070082 [ CCCCCCATCGAATCGAATCGAATCGAATCGAATCCCCTCACGATTCCACCAATCCTCCGCCGCCGGAGGAGGAGGCCAGGGAATCGCCGCCGCCAATGTCGCTGCCGGTGGCGAAGCTG GGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGCCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTA TTTTTTC GGTTGCTG TTGCT GC TTTAATTTTTGA GGTGCAAA GAAATGCAAGGTCAGAGGC TA GGAAGG AGGAAGCTCGTAAACA GGAAC TTGA GGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACACCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTTAAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCAGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTTCTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTTGCTAACACATCACGCACATAGCTACGGCTGAACTGAATGCCTCCTTT] [+] EMBL CF303671 [ CGAATCGAATCCCCTCACGATTCCACCAATCCTCCGCCGCCGGAGGAGGAGGCCAGGGAATCGCCGCCGCCAATGTCGCTGCCGGTGGCGAAGCTG GGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGCCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTA TTTTTTC GGTTGCTG TTGCT GC TTTAATTTTTGA GGTGCAAA GAAATGCAAGGTCAGAGGC TA GGAAGG AGGAAGCTCGTAAACA GGAAC TTGA GGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCT ] consensusID : consensus_8752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [CTGCATCGCGCAGTTANCCATCGTGTTACTACAAGGATACAAAGGCCCCATTTATGGGCATGCAACNGATGTGGAAATCACNCCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTTTTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCNCCTCGCTAAAGGACGAGGCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACNCCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTTAAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCAGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACNCCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTTCTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTTGCTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097466 [CTGCATCGCGCAGTTANCCATCGTGTTACTACAAGGATACAAAGGCCCCATTTATGGGCATGCAACNGATGTGGAAATCACNCCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTTTTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCNCCTCGCTAAAGGACGAGGCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACNCCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTTAAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCAGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACNCCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTTCTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTTGCTAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8752#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [GAGGCCGCCGCCAATGTCACTGCCGGTGGCGAAGCTGGGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGGCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTTTTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACACCTGCTTGATCAATCAAATTAACTTGGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAG] [+] EMBL CB000586 [GAGGCCGCCGCCAATGTCACTGCCGGTGGCGAAGCTGGGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGGCAGCCGCCTCAAGAACCAGGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCGTGTTACTACAAGGATACAAAGGCGCATTTATGGGCATGCAACAGATGTGGAAATCACACCTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTTTTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAGCAACACCTGCTTGATCAATCAAATTAACTTGGTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATAGACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8752#0 CTGCTCCCCCCATCGAATCGAATCGAATCGAATCGAATCCCCTCACGATTCCACCAATCC 60 consensus_8752#2 ------------------------------------------------------------ consensus_8752#1 ------------------------------------------------------------ consensus_8752#0 TCCGCCGCCGGAGGAGGAGGCCAGGGAATCGCCGCCGCCAATGTCGCTGCCGGTGGCGAA 120 consensus_8752#2 ---------------------------GAGGCCGCCGCCAATGTCACTGCCGGTGGCGAA 33 consensus_8752#1 ------------------------------------------------------------ consensus_8752#0 GCTGGGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGCCAGCCGCCTCAAGAACCA 180 consensus_8752#2 GCTGGGGACGCTGGCGCTGCGGACGCTGTCCAAGCCCATCGGCAGCCGCCTCAAGAACCA 93 consensus_8752#1 ------------------------------------------------------------ consensus_8752#0 GGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCG 240 consensus_8752#2 GGCCGCCGTCCACCCCAAGTTCCGCAACTTCATCATCTGCATCGCGCAGATTAACCATCG 153 consensus_8752#1 ------------------------------------CTGCATCGCGCAG-TTANCCATCG 23 ************* *** ****** consensus_8752#0 TGTTACTACAAGGATACAAAGGCGC-ATTTATGGGCATGCAACAGATGTGGAAATCACAC 299 consensus_8752#2 TGTTACTACAAGGATACAAAGGCGC-ATTTATGGGCATGCAACAGATGTGGAAATCACAC 212 consensus_8752#1 TGTTACTACAAGGATACAAAGGCCCCATTTATGGGCATGCAACNGATGTGGAAATCACNC 83 *********************** * ***************** ************** * consensus_8752#0 CTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTT 359 consensus_8752#2 CTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTT 272 consensus_8752#1 CTTTAAATGAGGAGAAAGCTGTACAAGCTGCTACGGATCTCATTGGAGAAGGCTTTATTT 143 ************************************************************ consensus_8752#0 TTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTA 419 consensus_8752#2 TTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTA 332 consensus_8752#1 TTTCGGTTGCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTA 203 ************************************************************ consensus_8752#0 GGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTAT 479 consensus_8752#2 GGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTAT 392 consensus_8752#1 GGAAGGAGGAAGCTCGTAAACAGGAACTTGAGGAATTGAAACAACGGGAAGAGAGTTTAT 263 ************************************************************ consensus_8752#0 CTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGAC 539 consensus_8752#2 CTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGAC 452 consensus_8752#1 CTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCNCCTCGCTAAAGGAC 323 ********************************************* ************** consensus_8752#0 GAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAG 599 consensus_8752#2 GAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAG 512 consensus_8752#1 GAGGC-TTTCAGGAATCTTGAACTTCAAAGGTGTTCATGGAGCAGAAAGCAGCAAGGCAG 382 ***** ****************************************************** consensus_8752#0 CAACACCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTT 659 consensus_8752#2 CAACACCTGCTTGATCAATCAAATTAACTTGG---------------------------- 544 consensus_8752#1 CAACNCCTGCTTGATCAATCAAATTAACTTGGGTCAGGCGAAACAGGATGATATTTTGTT 442 **** *************************** consensus_8752#0 AAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCA 719 consensus_8752#2 ------------------------------------------------------------ consensus_8752#1 AAGTTGATGCGCAAAACACCTCAAAATTTCACTGATCTGTTTTGTGATTCTTGTGTGGCA 502 consensus_8752#0 GTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATA 779 consensus_8752#2 -TTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATA 603 consensus_8752#1 GTTCATTGCCATGCCCATTCTTTTGGTGTATGGATCAAAATATATGCCGGATGATCCATA 562 *********************************************************** consensus_8752#0 GACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTT 839 consensus_8752#2 GACACCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAG------- 656 consensus_8752#1 GACNCCCTAAAATAATAGAGGCCAAGGATAGAAAAAGGCACTGTATCATGTAGATTACTT 622 *** ************************************************* consensus_8752#0 CTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTT 899 consensus_8752#2 ------------------------------------------------------------ consensus_8752#1 CTGGGTAAGTAACTATAGAACAAGTTCGAAAGAGTAAAAGTGAATGTGATATTGTACTTT 682 consensus_8752#0 GCTAACACATCACGCACATAGCTACGGCTGAACTGAATGCCTCCTTT 946 consensus_8752#2 ----------------------------------------------- consensus_8752#1 GCTAAAAAAAAAAAAAAAAAAAAAA---------------------- 707 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||