cluster # 8754

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Oryza sativa
cluster # 8754 cluster # 8754 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8754#0 length = 1388 sequences # 1

consensus_8754#1 length = 725 sequences # 4

consensusID : consensus_8754#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1388
fasta sequence

                              [CAAATTCCTAAGCATTTGGATCCAAATCCCTTGTATTCAAATAGGCCATTAGTTTTTTAAAAAAATGCAGTACTCCTTTTTACTTCTTTTTGCTAATTTAAACAACATAAGAGTAGTGGCGAGAGTAGTGGCAATAACCTAAGGAGGTAGATACCTTCTTCTTCACAATTTTAACCATTTATTTTTTAAACTATTCTGTTCAGCAACTTTAAATTAGACATACTCACCACAGTTCTTCACCATTGCCTCCAACAGCTGAAAATATTTCGTGACCAATATTAACAAGAAAAATCATAATCATGGAGTACTCGCTGCCTTATCATATGCTGATAGCTCAACAGTGAGTCAGTGACAGATAAGTAAATGGGCATTGACAAACAAATTGATGTTAGTCACAGAAATAAAAACTGGAGGTTCTCACATGAAAATATTACACAAGGGTAGATATTGTGATTAAAATTGTAGCACGAACCATCAACGTGAAAAATTCAACTCTGGCATCCTTATGCTCCAACTGCTTCACAATTTTCTACCACGCCTTGGTTTGCCTGATTCAAAGTGGCTGATAGTATTCTGGGTGACCAGAGATTCAGAGGTAACCTTCCATCTACAAGTTATTTTTTGGAGATAATGCAGTTTTAGCAATTCAAACTGTCGAGTTTACCAATAAGAAATAAATAGAACATTTAATGTGTTTAGTGATGCAGTATTTTTCACTGTACTGTTCAAATTGAATGTCTACATTCTATATAGTTAAACTACAGAGAACTTTGAATGCATTTTTTTTACCATGAACAGCAACTTAGACTAAAAGTATAAACTGCCTTCAGACCTTGTATTTTCAATAACGAAAGTAGCAAGCTAAAGCAACCAGTAAAGCTACAACATATTTACATGGCGAATTACTCAACAGATATAGCACGGCCTGATTTGCAACAAAAAAGAAAAGTAGAAAGAAGATAGCATGCCTGTAATAAAAACAGATTAGTTTAACCATATTCTGTTAAAGGAGAGCAACAGGTTATGGTAATCATTGTAAACCAGATTCTGATGCAAGTTACTGTTTTATTCCATCTCTCAGAAACTTTTATCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGTTAAATACT]

[+] EMBL AK108754             [CAAATTCCTAAGCATTTGGATCCAAATCCCTTGTATTCAAATAGGCCATTAGTTTTTTAAAAAAATGCAGTACTCCTTTTTACTTCTTTTTGCTAATTTAAACAACATAAGAGTAGTGGCGAGAGTAGTGGCAATAACCTAAGGAGGTAGATACCTTCTTCTTCACAATTTTAACCATTTATTTTTTAAACTATTCTGTTCAGCAACTTTAAATTAGACATACTCACCACAGTTCTTCACCATTGCCTCCAACAGCTGAAAATATTTCGTGACCAATATTAACAAGAAAAATCATAATCATGGAGTACTCGCTGCCTTATCATATGCTGATAGCTCAACAGTGAGTCAGTGACAGATAAGTAAATGGGCATTGACAAACAAATTGATGTTAGTCACAGAAATAAAAACTGGAGGTTCTCACATGAAAATATTACACAAGGGTAGATATTGTGATTAAAATTGTAGCACGAACCATCAACGTGAAAAATTCAACTCTGGCATCCTTATGCTCCAACTGCTTCACAATTTTCTACCACGCCTTGGTTTGCCTGATTCAAAGTGGCTGATAGTATTCTGGGTGACCAGAGATTCAGAGGTAACCTTCCATCTACAAGTTATTTTTTGGAGATAATGCAGTTTTAGCAATTCAAACTGTCGAGTTTACCAATAAGAAATAAATAGAACATTTAATGTGTTTAGTGATGCAGTATTTTTCACTGTACTGTTCAAATTGAATGTCTACATTCTATATAGTTAAACTACAGAGAACTTTGAATGCATTTTTTTTACCATGAACAGCAACTTAGACTAAAAGTATAAACTGCCTTCAGACCTTGTATTTTCAATAACGAAAGTAGCAAGCTAAAGCAACCAGTAAAGCTACAACATATTTACATGGCGAATTACTCAACAGATATAGCACGGCCTGATTTGCAACAAAAAAGAAAAGTAGAAAGAAGATAGCATGCCTGTAATAAAAACAGATTAGTTTAACCATATTCTGTTAAAGGAGAGCAACAGGTTATGGTAATCATTGTAAACCAGATTCTGATGCAAGTTACTGTTTTATTCCATCTCTCAGAAACTTTTATCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGTTAAATACT]




>consensus_8754#0
CAAATTCCTAAGCATTTGGATCCAAATCCCTTGTATTCAAATAGGCCATTAGTTTTTTAA
AAAAATGCAGTACTCCTTTTTACTTCTTTTTGCTAATTTAAACAACATAAGAGTAGTGGC
GAGAGTAGTGGCAATAACCTAAGGAGGTAGATACCTTCTTCTTCACAATTTTAACCATTT
ATTTTTTAAACTATTCTGTTCAGCAACTTTAAATTAGACATACTCACCACAGTTCTTCAC
CATTGCCTCCAACAGCTGAAAATATTTCGTGACCAATATTAACAAGAAAAATCATAATCA
TGGAGTACTCGCTGCCTTATCATATGCTGATAGCTCAACAGTGAGTCAGTGACAGATAAG
TAAATGGGCATTGACAAACAAATTGATGTTAGTCACAGAAATAAAAACTGGAGGTTCTCA
CATGAAAATATTACACAAGGGTAGATATTGTGATTAAAATTGTAGCACGAACCATCAACG
TGAAAAATTCAACTCTGGCATCCTTATGCTCCAACTGCTTCACAATTTTCTACCACGCCT
TGGTTTGCCTGATTCAAAGTGGCTGATAGTATTCTGGGTGACCAGAGATTCAGAGGTAAC
CTTCCATCTACAAGTTATTTTTTGGAGATAATGCAGTTTTAGCAATTCAAACTGTCGAGT
TTACCAATAAGAAATAAATAGAACATTTAATGTGTTTAGTGATGCAGTATTTTTCACTGT
ACTGTTCAAATTGAATGTCTACATTCTATATAGTTAAACTACAGAGAACTTTGAATGCAT
TTTTTTTACCATGAACAGCAACTTAGACTAAAAGTATAAACTGCCTTCAGACCTTGTATT
TTCAATAACGAAAGTAGCAAGCTAAAGCAACCAGTAAAGCTACAACATATTTACATGGCG
AATTACTCAACAGATATAGCACGGCCTGATTTGCAACAAAAAAGAAAAGTAGAAAGAAGA
TAGCATGCCTGTAATAAAAACAGATTAGTTTAACCATATTCTGTTAAAGGAGAGCAACAG
GTTATGGTAATCATTGTAAACCAGATTCTGATGCAAGTTACTGTTTTATTCCATCTCTCA
GAAACTTTTATCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGA
GGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCT
TCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCC
TCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGT
TTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGT
TAAATACT

consensusID : consensus_8754#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 725
fasta sequence

                              [TTGAGAATGGCTTCCTCACCGCTGCTCCGATCCGCCGGCGGCGTGCTCCGGCGGTCGATCCATGGAGCGCGGGAGCAATCCAGCCTCTTCTTCTTCCCCACCGCCACCGATTTGGCTGGGAGGAGACAATCCGTCTACAAGCAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCGCTCGCGGTCGCGGACCACCCGCGGCGCCTCTTCAGCTCCTCCGGTTGCAGCGGGAGGACGGAGCCCGCTGAGAAACTTTTGTCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGTTAAATACTTTCTGGTGTTAATCCCTAGCTTCGTTTCTATCGGTCTTATTCTTGATAAACTCCATGTGTTTGGTTGACTCCAAAAAGAAGGGCAACTTCCAACGTAACTTTTATTCAAGTGTAAACCCATTTTTATATTTTGGTCATGACTTTTGGCTAGTAAAAAAAAAAAAAA]

[+] EMBL CF337399             [TTGAGAATGGCTTCCTCACCGCTGCTCCGATCCGCCGGCGGCGTGCTCCGGCGGTCGATCCATGGAGCGCGGGAGCAATCCAGCCTCTTCTTCTTCCCCACCGCCACCGATTTGGCTGGGAGGAGACAATCCGTCTACAAGCAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCGCTCGCGGTCGCGGACCACCCGCGGCGCCTCTTCAGCTCCTCCGGTTGCAGCGGGAGGACGGAGCCCGCTGAGAAACTTTTGTCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCT                                                                                                                                                                                               ]
[+] EMBL CF337395             [TTGAGAATGGCTTCCTCACCGCTGCTCCGATCCGCCGGCGGCGTGCTCCGGCGGTCGATCCATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CA760938             [                                                         ATCCATGAAGCGCGGGAGCAATCCAGCCTCTTCTTCTTCCCCACCGCCACCGATTTGGCTGGGAGGAGACAATCCGTCTACAAGCAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCGCTCGCGGTCGCGGACCACCCGCGGCGCCTCTTCAGCTCCTCCGGTTGCAGCGGGAGGACGGAGCCCGCTGAGAAACTTTTATCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGC TTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGTTAAATACTTTCTGGTGTTAATCCCTAGCTTCGTTTCTATCGGTCTTATTCTTGATAAACTCCATGTGTTTGGTTGACTCCAAAAAGAAGGGCAACTTCCAACGTAACTTTTATTCAAGTGTAAACCCATTTTTATATTTTGGTCATGACTTTTGGCTAGTAAAAAAAAAAAAAA]
[-] EMBL CF317943             [                                                                                                        CACCGATTTGGCTGGGAGGAGACAATCCGTCTACAAGCAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCGCTCGCGGTCGCGGACCACCCGCGGCGCCTCTTCAGCTCCTCCGGTTGCAGCGGGAGGACGGAGCCCGCTGAGAAACTTTTGTCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGTTAAATACTTTCTGGTGTTAAaaaaaaaa                                                                                                                                                  ]




>consensus_8754#1
TTGAGAATGGCTTCCTCACCGCTGCTCCGATCCGCCGGCGGCGTGCTCCGGCGGTCGATC
CATGGAGCGCGGGAGCAATCCAGCCTCTTCTTCTTCCCCACCGCCACCGATTTGGCTGGG
AGGAGACAATCCGTCTACAAGCAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCG
CTCGCGGTCGCGGACCACCCGCGGCGCCTCTTCAGCTCCTCCGGTTGCAGCGGGAGGACG
GAGCCCGCTGAGAAACTTTTGTCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGG
AAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAG
GAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACAC
GAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTA
GACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATG
TATGATCAAGTTAAATACTTTCTGGTGTTAATCCCTAGCTTCGTTTCTATCGGTCTTATT
CTTGATAAACTCCATGTGTTTGGTTGACTCCAAAAAGAAGGGCAACTTCCAACGTAACTT
TTATTCAAGTGTAAACCCATTTTTATATTTTGGTCATGACTTTTGGCTAGTAAAAAAAAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8754#0      CAAATTCCTAAGCATTTGGATCCAAATCCCTTGTATTCAAATAGGCCATTAGTTTTTTAA 60
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      AAAAATGCAGTACTCCTTTTTACTTCTTTTTGCTAATTTAAACAACATAAGAGTAGTGGC 120
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      GAGAGTAGTGGCAATAACCTAAGGAGGTAGATACCTTCTTCTTCACAATTTTAACCATTT 180
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      ATTTTTTAAACTATTCTGTTCAGCAACTTTAAATTAGACATACTCACCACAGTTCTTCAC 240
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      CATTGCCTCCAACAGCTGAAAATATTTCGTGACCAATATTAACAAGAAAAATCATAATCA 300
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      TGGAGTACTCGCTGCCTTATCATATGCTGATAGCTCAACAGTGAGTCAGTGACAGATAAG 360
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      TAAATGGGCATTGACAAACAAATTGATGTTAGTCACAGAAATAAAAACTGGAGGTTCTCA 420
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      CATGAAAATATTACACAAGGGTAGATATTGTGATTAAAATTGTAGCACGAACCATCAACG 480
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      TGAAAAATTCAACTCTGGCATCCTTATGCTCCAACTGCTTCACAATTTTCTACCACGCCT 540
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      TGGTTTGCCTGATTCAAAGTGGCTGATAGTATTCTGGGTGACCAGAGATTCAGAGGTAAC 600
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      CTTCCATCTACAAGTTATTTTTTGGAGATAATGCAGTTTTAGCAATTCAAACTGTCGAGT 660
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      TTACCAATAAGAAATAAATAGAACATTTAATGTGTTTAGTGATGCAGTATTTTTCACTGT 720
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      ACTGTTCAAATTGAATGTCTACATTCTATATAGTTAAACTACAGAGAACTTTGAATGCAT 780
consensus_8754#1      ------------------------------------------------------------
                                                                                  

consensus_8754#0      TTTTTTTACCATGAACAGCAACTTAGACTAAAAGTATAAACTGCCTTCAGACCTTGTATT 840
consensus_8754#1      ---------------------------------TTGAGAATGGCTTCCTCACC--GCTGC 25
                                                        *   **  ** * *  ***  *    

consensus_8754#0      TTCAATAACGAAAGTAGCAAGCTAAAGCAACCAGTAAAGCTACAACATATTTACATGGCG 900
consensus_8754#1      TCCGATC-CGCCGGCGGCGTGCTCCGGCGGTCGATCCA--TGGAGCGCGGGAGCAATCCA 82
                      * * **  **   *  **  ***   **   *  *  *  *  * *       **   * 

consensus_8754#0      AATTACTCAACAGATATAGCACGGCCTGATTTGCAACAAAAAAGAAAAGTAGAAAGAAGA 960
consensus_8754#1      GCCTCTTCTTCTTCCCCACCGCCACC-GATTTGGCTGGGAGGAGACAATCCGTCTACAAG 141
                         *  **  *      * * *  ** ******      *  *** **   *     *  

consensus_8754#0      TAGCATGCCTGTAATAAAAACAGATTAGTTTAACCATATTCTGTTAAAGGAGAGCAACAG 1020
consensus_8754#1      CAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCGCTCGCGGTCGCGGACCACCCG 201
                       **   ** *          *   ** *     ****     *     *  ** ** * *

consensus_8754#0      GTTATGGTAATCATTGTAAACCAGATTCTGATGCAAGTTACTGTTTTATTCCATCTCTCA 1080
consensus_8754#1      ----CGGCGCCTCTTCAGCTCC---TCCGGTTGCAGCGGGAGGACGGAGCCCG---CTGA 251
                           **      **     **   * * * ****       *    *  **    ** *

consensus_8754#0      GAAACTTTTATCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGA 1140
consensus_8754#1      GAAACTTTTGTCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGA 311
                      ********* **************************************************

consensus_8754#0      GGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCT 1200
consensus_8754#1      GGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCT 371
                      ************************************************************

consensus_8754#0      TCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCC 1260
consensus_8754#1      TCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCC 431
                      ************************************************************

consensus_8754#0      TCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGT 1320
consensus_8754#1      TCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGT 491
                      ************************************************************

consensus_8754#0      TTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGT 1380
consensus_8754#1      TTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGT 551
                      ************************************************************

consensus_8754#0      TAAATACT---------------------------------------------------- 1388
consensus_8754#1      TAAATACTTTCTGGTGTTAATCCCTAGCTTCGTTTCTATCGGTCTTATTCTTGATAAACT 611
                      ********                                                    

consensus_8754#0      ------------------------------------------------------------
consensus_8754#1      CCATGTGTTTGGTTGACTCCAAAAAGAAGGGCAACTTCCAACGTAACTTTTATTCAAGTG 671
                                                                                  

consensus_8754#0      ------------------------------------------------------
consensus_8754#1      TAAACCCATTTTTATATTTTGGTCATGACTTTTGGCTAGTAAAAAAAAAAAAAA 725