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Oryza sativa
cluster # 8762 cluster # 8762       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8762#0 length = 1840 sequences # 5  

consensusID : consensus_8762#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1840
fasta sequence
                              [AACACGTATGTTCATATCCACACCTCTCCCCCAAGTACGAGACAAGGTCTCGAGAACAAAACCCCCCAAACCCCACGGCGGCGGCGGCGAGCGGCGGCGGAAGAAGCAGCCGCAAGAGGCAGCAGCTCGCGCTGGCGGCGGCATGGGTGGGAGCAGCGCAAGCCCGTGTGACCTGGACAGGGAGTTCGCGCCCCAAATCGCCCAGCTCCTCGCCACCCCTCCTCTCCAACCCGCGCAGGAATACTACAATGGGCTCATACAGTCCAGGAAACATGATGGTATAAGAGTGAACTTCAGCAGCAAGCATGGGAAAGGTGTTTGTGCGAACAAGGAGTTTGCAGAAGGGGACCTTATTCTGAAGGAT-CAAATATTGGTTGGTGCTCAGCACAGTCTTAACAAGATTGATTGCGCTGTGTGCAGTTATTGCTTTCGCTTCATTGGTTCTATAGAGTTCCAGATTGGACGAAGATTGTATTGGCAAAGCGTTGGTTCAAGCAGTGACTGCACTAATAGGAGGCATTGCCATGAGAGTGATTTGGGATCGAGTGCCAGTTCTTCTGGTGCAACAAAGGAAAACAGTAGTACTTTGCCAGAAGAGGTCTTAGGATCACTTATTACTGGTGACATGTCACTGCCTTTCACAGACCATTTTAGTTTGCCTCAAGTTGTTCCTTGTCGTGGATGTGAGGAAGAACGCTACTGCAGCCAATCATGTGCTGATTCCGACTGGGAAACTTATCACTCTTTGCTGTGTACTGGATCTAAGACTGAACCATCCCAGAGATCTGCTCTTCAGAAATTCATAGAACATGCAAATGGGTCCAATGATATTTTTCTTGTTGCTGCCAAGGCTATCACTTTCACTCTGCTGAGGTACAAGAAACTCAAAACGCAGCCTGAATTTCAAAATAACACAGATGAATCAAACTTTTCTTTGCTTATGGAAGCATGGAAACCACTTTCGATGGGCTACAAAAAGAGGTGGTGGGACTCTGTTGCTTTGCCTGAGGATGTTGATTCCTGTGATGAAGATACATTTAGGCAGCAAATTAGGGATCTAGCACTTACGTCATTGCAGCTTCTCAAGGATGCTATTTTTGATTCTGAGTGTGCACCCTTGTTCTCACTTGACGTGTATGGCCATTTAATTGGCATGTTTGAGCTGAACAATCTTGGTTTGGTTGTTCCGTCTCCAGTGGAAGACTATTTCA-TACATATTGAT-GATCTTCCA-GATGATGAGAAGGAGGAAGCTGAA-AAGGTTACAAGGCCAT-T-TCT-AGATGCTTTAGGTGAAGACTATGCA-GCTCCTTGTGAGGGGACGGCATTCTTTCCTTTGCAAAGCTGTATGAATCA-TTCATGTTGTCCAAATGCTA-AAGC---ATATAAAAGGGATGAGGATA-CTGATGGTAATG-CAGTGATAATTGCTCTGGAGCCTATCAAGAAGGACGATGAGATTACCATATCCTACATCGATGAGGATGTCTCCTACGAGGAGAGG-CA-GGCGGAGCTTGCAGATTATGGATTCATCTGTACGTGCCCTAGGTGCCA-AGAAGAAAAGCCCA-ACTGAAC--AAGATCCA-CA-GTTTGGAGGTTCCTGAAATTTATTTTTTTGGTGTGGAATATGCA-ATTGAAGTTTTGACGACTCCA-TTTATTTTA---TTTTTTTTGTCTAGGATATGCAATTGAGATTTTGACAACTCCAAAAATGTTAGGATAGGATATGCGGAAAGAATGATATGATACGTACTTATTTGAGTGGATGCTGGATTTTGCTGTGCTAATGTTGGATGCTGCAGAAAGTTTTTATTCCTTCTGTTCAGTTGAGATTTTTCCTTTTGTGAAAATAACACAT]

[+] EMBL AK065665             [AACACGTATGTTCATATCCACACCTCTCCCCCAAGTACGAGACAAGGTCTCGAGAACAAAACCCCCCAAACCCCACGGCGGCGGCGGCGAGCGGCGGCGGAAGAAGCAGCCGCAAGAGGCAGCAGCTCGCGCTGGCGGCGGCATGGGTGGGAGCAGCGCAAGCCCGTGTGACCTGGACAGGGAGTTCGCGCCCCAAATCGCCCAGCTCCTCGCCACCCCTCCTCTCCAACCCGCGCAGGAATACTACAATGGGCTCATACAGTCCAGGAAACATGATGGTATAAGAGTGAACTTCAGCAGCAAGCATGGGAAAGGTGTTTGTGCGAACAAGGAGTTTGCAGAAGGGGACCTTATTCTGAAGGAT CAAATATTGGTTGGTGCTCAGCACAGTCTTAACAAGATTGATTGCGCTGTGTGCAGTTATTGCTTTCGCTTCATTGGTTCTATAGAGTTCCAGATTGGACGAAGATTGTATTGGCAAAGCGTTGGTTCAAGCAGTGACTGCACTAATAGGAGGCATTGCCATGAGAGTGATTTGGGATCGAGTGCCAGTTCTTCTGGTGCAACAAAGGAAAACAGTAGTACTTTGCCAGAAGAGGTCTTAGGATCACTTATTACTGGTGACATGTCACTGCCTTTCACAGACCATTTTAGTTTGCCTCAAGTTGTTCCTTGTCGTGGATGTGAGGAAGAACGCTACTGCAGCCAATCATGTGCTGATTCCGACTGGGAAACTTATCACTCTTTGCTGTGTACTGGATCTAAGACTGAACCATCCCAGAGATCTGCTCTTCAGAAATTCATAGAACATGCAAATGGGTCCAATGATATTTTTCTTGTTGCTGCCAAGGCTATCACTTTCACTCTGCTGAGGTACAAGAAACTCAAAACGCAGCCTGAATTTCAAAATAACACAGATGAATCAAACTTTTCTTTGCTTATGGAAGCATGGAAACCACTTTCGATGGGCTACAAAAAGAGGTGGTGGGACTCTGTTGCTTTGCCTGAGGATGTTGATTCCTGTGATGAAGATACATTTAGGCAGCAAATTAGGGATCTAGCACTTACGTCATTGCAGCTTCTCAAGGATGCTATTTTTGATTCTGAGTGTGCACCCTTGTTCTCACTTGACGTGTATGGCCATTTAATTGGCATGTTTGAGCTGAACAATCTTGGTTTGGTTGTTCCGTCTCCAGTGGAAGACTATTTCA TACATATTGAT GATCTTCCA GATGATGAGAAGGAGGAAGCTGAA AAGGTTACAAGGCCAT T TCT AGATGCTTTAGGTGAAGACTATGCA GCTCCTTGTGAGGGGACGGCATTCTTTCCTTTGCAAAGCTGTATGAATCA TTCATGTTGTCCAAATGCTA AAGC   ATATAAAAGGGATGAGGATA CTGATGGTAATG CAGTGATAATTGCTCTGGAGCCTATCAAGAAGGACGATGAGATTACCATATCCTACATCGATGAGGATGTCTCCTACGAGGAGAGG CA GGCGGAGCTTGCAGATTATGGATTCATCTGTACGTGCCCTAGGTGCCA AGAAGAAAAGCCCA ACTGAAC  AAGATCCA CA GTTTGGAGGTTCCTGAAATTTATTTTTTTGGTGTGGAATATGCA ATTGAAGTTTTGACGACTCCA TTTATTTTA   TTTTTTTTGTCTAGGATATGCAATTGAGATTTTGACAACTCCAAAAATGTTAGGATAGGATATGCGGAAAGAATGATATGATACGTACTTATTTGAGTGGATGCTGGATTTTGCTGTGCTAATGTTGGATGCTGCAGGAAGTTTTTATTCCTTCTGTTCAGTTGAGATTTTTCCTTTTGTGAAAATAACACAT]
[+] EMBL CF315630             [                            gaaggAGTA GA AAAAGGTCTCGAGAACAAAACCCCCCAAACCCCACGGCGGCGGCGGCGAGCGGCGGCGGAAGAAGCAGCCGCAAGAGGCAGCATCTCGCGCTGGCGGCGGCATGGGTGGGAGCAGCGCAAGCCCGTGTGACCTGGACAGGGAGTTCGCGCCCCAAATCGCCCAGCTCCTCGCCACCCCTCCTCTCCAACCCGCGCAGGAATACTACAATGGGCTCATACAGTCCAGGAAACATGATGGTATAAGAGTGAACTTCAGCAGCAAGCATGGGAAAGGTGTTTGTGCGAACAAGGAGTTTGCAGAAGGGGACCTTATTCTGAAGGATNCAAATATTGGTTGGTGCTCAGCACAGTCTTAACAAGATTGATTGCGCTGTGTGCAGTTATTGCTTTCGCTTCATTGGTTCTATAGAGTTCCAGATTGGACGAAGATTGTATTGGCAAAGCGTTGGTTCAAGCAGTGACTGCACTAATAGGAGGCATTGCCATGAGAGTGATTTGGGATCGAGTGCCAGTTCTTCTGGTGCAACAAAGGAAAACAGTAGTACTTTGCCAGAAGAGGTCTTAGGATCACTTATTACTGGTGACATGTCACTGCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK099320             [                                                  CGAGAACAAAACCCCCCAAACCCCACGGCGGCGGCGGCGAGCGGCGGCGGAAGAAGCAGCCGCAAGAGGCAGCAGCTCGCGCTGGCGGCGGCATGGGTGGGAGCAGCGCAAGCCCGTGTGACCTGGACAGGGAGTTCGCGCCCCAAATCGCCCAGCTCCTCGCCACCCCTCCTCTCCAACCCGCGCAGGAATACTACAATGGGCTCATACAGTCCAGGAAACATGATGGTATAAGAGTGAACTTCAGCAGCAAGCATGGGAAAGGTGTTTGTGCGAACAAGGAGTTTGCAGAAGGGGACCTTATTCTGAAGGAT CAAATATTGGTTGGTGCTCAGCACAGTCTTAACAAGATTGATTGCGCTGTGTGCAGTTATTGCTTTCGCTTCATTGGTTCTATAGAGTTCCAGATTGGACGAAGATTGTATTGGCAAAGCGTTGGTTCAAGCAGTGACTGCACTAATAGGAGGCATTGCCATGAGAGTGATTTGGGATCGAGTGCCAGTTCTTCTGGTGCAACAAAGGAAAACAGTAGTACTTTGCCAGAAGAGGTCTTAGGATCACTTATTACTGGTGACATGTCACTGCCTTTCACAGACCATTTTAGTTTGCCTCAAGTTGTTCCTTGTCGTGGATGTGAGGAAGAACGCTACTGCAGCCAATCATGTGCTGATTCCGACTGGGAAACTTATCACTCTTTGCTGTGTACTGGATCTAAGACTGAACCATCCCAGAGATCTGCTCTTCAGAAATTCATAGAACATGCAAATGGGTCCAATGATATTTTTCTTGTTGCTGCCAAGGCTATCACTTTCACTCTGCTGAGGTACAAGAAACTCAAAACGCAGCCTGAATTTCAAAATAACACAGATGAATCAAACTTTTCTTTGCTTATGGAAGCATGGAAACCACTTTCGATGGGCTACAAAAAGAGGTGGTGGGACTCTGTTGCTTTGCCTGAGGATGTTGATTCCTGTGATGAAGATACATTTAGGCAGCAAATTAGGGATCTAGCACTTACGTCATTGCAGCTTCTCAAGGATGCTATTTTTGATTCTGAGTGTGCACCCTTGTTCTCACTTGACGTGTATGGCCATTTAATTGGCATGTTTGAGCTGAACAATCTTGGTTTGGTTGTTCCGTCTCCAGTGGAAGACTATTTCA TACATATTGAT GATCTTCCA GATGATGAGAAGGAGGAAGCTGAA AAGGTTACAAGGCCAT T TCT AGATGCTTTAGGTGAAGACTATGCA GCTCCTTGTGAGGGGACGGCATTCTTTCCTTTGCAAAGCTGTATGAATCA TTCATGTTGTCCAAATGCTA AAGC   ATATAAAAGGGATGAGGATA CTGATGGTAATG CAGTGATAATTGCTCTGGAGCCTATCAAGAAGGACGATGAGATTACCATATCCTACATCGATGAGGATGTCTCCTACGAGGAGAGG CA GGCGGAGCTTGCAGATTATGGATTCATCTGTACGTGCCCTAGGTGCCA AGAAGAAAAGCCCA ACTGAAC  AAGATCCA CA GTTTGGAGGTTCCTGAAATTTATTTTTTTGGTGTGGAATATGCA ATTGAAGTTTTGACGACTCCA TTTATTTTA   TTTTTTTTGTCTAGGATATGCAATTGAGATTTTGACAACTCCAAAAATGTTAGGATAGGATATGCGGAAAGAATGATATGATACGTACTTATTTGAGTGGATGCTGGATTTTGCTGTGCTAATGTTGGATGCTGCAGAAAGTTTTTATTCCTTCTGTTCAGTTGAGATTTT                      ]
[-] EMBL CF315631             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGCATGTTTGAGCTGAACAATCTTGGTTTGGTTGTTCCGTCTCCAGTGGAAGACTATTTCA TACATATTGAT GATCTTCCA GATGATGAGAAGGAGGAAGCTGAA AAGGTTACAAGGCCAT T TCT AGATGCTTTAGGTGAAGACTATGCA GCTCCTTGTGAGGGGACGGCATTCTTTCCTTTGCAAAGCTGTATGAATCA TTCATGTTGTCCAAATGCTA AAGC   ATATAAAAGGGATGAGGATA CTGATGGTAATG CAGTGATAATTGCTCTGGAGCCTATCAAGAAGGACGATGAGATTACCATATCCTACATCGATGAGGATGTCTCCTACGAGGAGAGG CA GGCGGAGCTTGCAGATTATGGATTCATCTGTACGTGCCCTAGGTGCCA AGAAGAAAAGCCCA ACTGAAC  AAGATCCA CA GTTTGGAGGTTCCTGAAATTTATTTTTTTGGTGTGGAATATGCA ATTGAAGTTTTGACGACTCCA TTTATTTTA   TTTTTTTTGTCTAGGATATGCAATTGAGATTTTGACAACTCCAAAAATGTTAGGATAGGATATGCGGAAAGAATGATATGATACGTACTTATTTGAGTGGATGCTGGATTTTGCTGTGCTAATGTTGGATGCTGCAGAAAGTTTTTAaaaaaa                                        ]
[+] EMBL BQ908390             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGGAAGACTATTTCAGTACATATTGATCGATCTTCCACGATGATGAGAAGGAGGAAGCTGAATAAGGTTACAAGGCCATGTGTCTCAGATGCTTTAGGTGAAGACTATGCACGCTCCTTGTGAGGGGACGGCATTCTTTCCTTTGCAAAGCTGTATGAATCAGTTCATGTTGTCCCAATGCTATAAGCACTATATAAACGGGATGAGGATACCTGATGGTAATGNCAGTGATAATTGCTCTGGAGCCTATCAAGAAGGACGATGAGATTACCATATCCTACATCGATGAGGATGTCTCCTACGAGGAGAGGCCACGGCGGAGCTTGCAGATTATGGATTCATCTGTACGTGCCCTAGGTGCCACAGAAGAAAAGCCCACACTGAACCNCAGATCCACCACGTTTGGAGGTTCCTGAAATTTATTTTTTTGGTCTGGAATATGCACATTGAAGTTTTGACGACTCCACTTTATTTTATTTTTTTTTTTGTCTAGGATATGCCATTGAGATTTTGACAACTCCCAAAATGTTAGGATAGGATATGCGGAAAGAATGATATGATACGTACTTATTTGAGTGGATGCTGGATTTTGCTGTGCTAATGTTGGATGCTGCAGAAAGTTTTTATTCCTTCTGTTCAaaaaaaaaa                        ]


>consensus_8762#0 AACACGTATGTTCATATCCACACCTCTCCCCCAAGTACGAGACAAGGTCTCGAGAACAAA ACCCCCCAAACCCCACGGCGGCGGCGGCGAGCGGCGGCGGAAGAAGCAGCCGCAAGAGGC AGCAGCTCGCGCTGGCGGCGGCATGGGTGGGAGCAGCGCAAGCCCGTGTGACCTGGACAG GGAGTTCGCGCCCCAAATCGCCCAGCTCCTCGCCACCCCTCCTCTCCAACCCGCGCAGGA ATACTACAATGGGCTCATACAGTCCAGGAAACATGATGGTATAAGAGTGAACTTCAGCAG CAAGCATGGGAAAGGTGTTTGTGCGAACAAGGAGTTTGCAGAAGGGGACCTTATTCTGAA GGATCAAATATTGGTTGGTGCTCAGCACAGTCTTAACAAGATTGATTGCGCTGTGTGCAG TTATTGCTTTCGCTTCATTGGTTCTATAGAGTTCCAGATTGGACGAAGATTGTATTGGCA AAGCGTTGGTTCAAGCAGTGACTGCACTAATAGGAGGCATTGCCATGAGAGTGATTTGGG ATCGAGTGCCAGTTCTTCTGGTGCAACAAAGGAAAACAGTAGTACTTTGCCAGAAGAGGT CTTAGGATCACTTATTACTGGTGACATGTCACTGCCTTTCACAGACCATTTTAGTTTGCC TCAAGTTGTTCCTTGTCGTGGATGTGAGGAAGAACGCTACTGCAGCCAATCATGTGCTGA TTCCGACTGGGAAACTTATCACTCTTTGCTGTGTACTGGATCTAAGACTGAACCATCCCA GAGATCTGCTCTTCAGAAATTCATAGAACATGCAAATGGGTCCAATGATATTTTTCTTGT TGCTGCCAAGGCTATCACTTTCACTCTGCTGAGGTACAAGAAACTCAAAACGCAGCCTGA ATTTCAAAATAACACAGATGAATCAAACTTTTCTTTGCTTATGGAAGCATGGAAACCACT TTCGATGGGCTACAAAAAGAGGTGGTGGGACTCTGTTGCTTTGCCTGAGGATGTTGATTC CTGTGATGAAGATACATTTAGGCAGCAAATTAGGGATCTAGCACTTACGTCATTGCAGCT TCTCAAGGATGCTATTTTTGATTCTGAGTGTGCACCCTTGTTCTCACTTGACGTGTATGG CCATTTAATTGGCATGTTTGAGCTGAACAATCTTGGTTTGGTTGTTCCGTCTCCAGTGGA AGACTATTTCATACATATTGATGATCTTCCAGATGATGAGAAGGAGGAAGCTGAAAAGGT TACAAGGCCATTTCTAGATGCTTTAGGTGAAGACTATGCAGCTCCTTGTGAGGGGACGGC ATTCTTTCCTTTGCAAAGCTGTATGAATCATTCATGTTGTCCAAATGCTAAAGCATATAA AAGGGATGAGGATACTGATGGTAATGCAGTGATAATTGCTCTGGAGCCTATCAAGAAGGA CGATGAGATTACCATATCCTACATCGATGAGGATGTCTCCTACGAGGAGAGGCAGGCGGA GCTTGCAGATTATGGATTCATCTGTACGTGCCCTAGGTGCCAAGAAGAAAAGCCCAACTG AACAAGATCCACAGTTTGGAGGTTCCTGAAATTTATTTTTTTGGTGTGGAATATGCAATT GAAGTTTTGACGACTCCATTTATTTTATTTTTTTTGTCTAGGATATGCAATTGAGATTTT GACAACTCCAAAAATGTTAGGATAGGATATGCGGAAAGAATGATATGATACGTACTTATT TGAGTGGATGCTGGATTTTGCTGTGCTAATGTTGGATGCTGCAGAAAGTTTTTATTCCTT CTGTTCAGTTGAGATTTTTCCTTTTGTGAAAATAACACAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)