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Oryza sativa
cluster # 8764 cluster # 8764       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8764#0 length = 1015 sequences # 4  
consensus_8764#1 length = 361 sequences # 1  

consensusID : consensus_8764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1015
fasta sequence
                              [CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGC-GAC-GGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCA---GAGGAAGAGAAGAACGAGCTAGACGAC-GACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGACTTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTCAAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACTCATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA]

[+] EMBL AK069900             [CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGC GAC GGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCA   GAGGAAGAGAAGAACGAGCTAGACGAC GACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGACTTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTCAAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACTCATGACTTGTATCTGATTTCATCAACTTAATTGAAACA                 ]
[+] EMBL AU172789             [ AAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGCNGACNGGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BE040395             [                   aTCTCCTGGGTGATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGC GAC GGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCGGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCANGCCGTGGAGGTGGCGGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACCGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGTGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGTCACCCAAGAAAGGCACTGATGAAGACGACCAAAAAGATGAAGATGGTGCANAGGAGGAAGAGAAG ACNAGCTANACGAC GACATCTAGGCCACCCGTCCAATGGATGGATGGGTGGGTAATTCCT  TCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAATATCCATTGATTCTGGTGGGGGGGA   TCTAGTACTAGAACTACTAGTGGCTGCAGTGTGACCTGC CCTCAAGTGAATG ATGGATGAATG                                                                                                                                                                                         ]
[+] EMBL AU172790             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGAAGATGGTGCA   GAGGAAGAGAAGAACGAGCTAGACGACGGACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGACTTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTCAAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACTCATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA]


>consensus_8764#0 CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAG GAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGCGACGGCAGCGCCTT CACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTG CAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGA GGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAA AAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTA CAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAG GTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAA GGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGA GCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGA TGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGA TGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTAT GCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACT ACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGAC TTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTC AAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACT CATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA



consensusID : consensus_8764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence
                              [GCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGGC]

[-] EMBL AU225712             [GCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGGC]


>consensus_8764#1 GCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGC AGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGA TGAAGATGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCC AATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGC TAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACT AGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGG C



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8764#0      CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAG 60
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      GAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGCGACGGCAGCGCCTT 120
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      CACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTG 180
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      CAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGA 240
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      GGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAA 300
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      AAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTA 360
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      CAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAG 420
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      GTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAA 480
consensus_8764#1      ------------------------------------------------------GCTCAA 6
                                                                            ******

consensus_8764#0      GGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGA 540
consensus_8764#1      GGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGA 66
                      ************************************************************

consensus_8764#0      GCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGA 600
consensus_8764#1      GCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGA 126
                      ************************************************************

consensus_8764#0      TGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGA 660
consensus_8764#1      TGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGA 186
                      ************************************************************

consensus_8764#0      TGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTAT 720
consensus_8764#1      TGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTAT 246
                      ************************************************************

consensus_8764#0      GCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACT 780
consensus_8764#1      GCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACT 306
                      ************************************************************

consensus_8764#0      ACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGAC 840
consensus_8764#1      ACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGGC----- 361
                      ********************************  * * * * * * * *           

consensus_8764#0      TTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTC 900
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      AAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACT 960
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      CATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA 1015
consensus_8764#1      -------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)