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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8766 cluster # 8766       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8766#0 length = 1006 sequences # 5  

consensusID : consensus_8766#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1006
fasta sequence
                              [ACTAATCCATCCTGTAGCTTCTAATCAAACTGAGAGGGAGAGAGATCAGAGAGAGCGCATATAAATACAATGAGCAGGTCGAGCATGGCCGCTGTCTTCCTGGTGGTGTTGATAGCCATCAACGTCGTCTGCTTATCCCCACAAGGTGCAACTGCAGCGCCAGAGGGGGAACTTCATAAACTCAACCTTGAGCTGCCACCGCCGTTGCCGCCTGGGAAGGAACCCTCAACGGAGGCGTACCGGTTCACCCAACAAGTCTGCGATTTTGGAACTAGCACCTTCACGGAACAGATGATCGGTGCCCGCTGCTACGATGTACTCATCCCGTATGGCGAGTCATTCAAGGGCAACCAAGTGAAGGCCACTCAGGTGGCCACCATCATCTTAGTCACCAAGATCCAAGCCCTCACTAGTGAGGCGTACGCGATAAGAGACATGGGCATCAGGGACGAAAACATCAATAACTGCGGGTCTTTCTTTGCCATTGGCGAAACCTTTTCGGACACCACCAACTCGACGCTATACGCGCTCGAGCGCCTCACTGCCGCCGGAGAAGGTAAACGCAGTAAGGAGGACCTGGAAACTGTGCACAAGTGGACCAAGAATTTGGAGACCCAATACGATGAGACCGCGAGCAAGTGCAAGTTAGGTGATCTGTT-CAAGTACGGTGACAAGAAGGTTCCCACCGTTTGGGTCATAGACCTGCTCACGACCACAGCCATCCGCCTCCTCAATGCCATAAAGCCATGATTGATCGATCGATCATCCCTTCAATCTTAGCTATATATACCTTCCACTAAATTTTTTTTATTTATATTTTGGATAATTCCCATGATATATATGTAATAAGTGCGTGATGCGCATGGATATCGCATGCATGCTGCATTTGTAACATTGTTATCAATATTTGAAAATATTTTTTTCAATATTGTAATTACTAGCAAAGTGTGTCGATGTGTTGTAACGGACCGAAAAACCAAAATGCAATAATGGTTAAGCTGACAAA]

[+] EMBL AK070815             [ACTAATCCATCCTGTAGCTTCTAATCAAACTGAGAGGGAGAGAGATCAGAGAGAGCGCATATAAATACAATGAGCAGGTCGAGCATGGCCGCTGTCTTCCTGGTGGTGTTGATAGCCATCAACGTCGTCTGCTTATCCCCACAAGGTGCAACTGCAGCGCCAGAGGGGGAACTTCATAAACTCAACCTTGAGCTGCCACCGCCGTTGCCGCCTGGGAAGGAACCCTCAACGGAGGCGTACCGGTTCACCCAACAAGTCTGCGGTTTTGGAACTAGCACCTTCACGGAACAGATGATCGGTGCCCGCTGCTACGATGTACTCATCCCGTATGGCGAGTCATTCAAGGGCAACCAAGTGAAGGCCACTCAGGTGGCCACCATCATCTTAGTCACCAAGATCCAAGCCCTCACTAGTGAGGCGTACGCGATAAGAGACATGGGCATCAGGGACGAAAACATCAATAACTGCGGGTCTTTCTTTGCCATTGGCGAAACCTTTTCGGACACCACCAACTCGACGCTATACGCGCTCGAGCGCCTCACTGCCGCCGGAGAAGGTAAACGCAGTAAGGAGGACCTGGAAACTGTGCACAAGTGGACCAAGAATTTGGAGACCCAATACGATGAGACCGCGAGCAAGTGCAAGTTAGGTGATCTGTT CAAGTACGGTGACAAGAAGGTTCCCACCGTTTGGGTCATAGACCTGCTCACGACCACAGCCATCCGCCTCCTCAATGCCATAAAGCCATGATTGATCGATCGATCATCCCTTCAATCTTAGCTATATATACCTTCCACTAAATTTTTTTTATTTATATTTTGGATAATTCCCATGATATATATGTAATAAGTGCGTGATGCGCATGGATATCGCATGCATGCTGCATTTGTAACATTGTTATCAATATTTGAAAATATTTTTTTCAATATTGTAATTACTAGCAAAGTGTGTCGATGTGTTGTAACGGACCGAAAAACCAAAATGCAATAATGGTTAAGCTGAC   ]
[+] EMBL C73246               [                 CTTCTAATCAAACTNAGAGGGAGANAGATCAGAGAGAGCGCATATAAATACAATGAGCAGGTCGAGCATGGCCGCTGTNTTCCTGGTGGTGTTGATAGCCATCAACGTCGTCTGCTTATCCCCACAAGGTGCAACTGCAGCGCCAGAGGGGGAACTTCATAAACTCAACCTTGAGCTGCCACCGCCGTTGCCGCCTGGAAAGGAACCCTCAACGGAGGCGTACCGGTTCACCCAACAAGTCTGCNATTTTGGAACTAGCACCTTCACGGAACANATGATCGGTGCCCGCTGCTACGATGTACTCATCCCGTATGGCGAGTCATTCAAGGGCAACCAAGTTAAGGCCACTCAGGTGGCCACCATCATCTTAGTCACCAAGATCCAAGCCCTCATTAGTTAGGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU162212             [                                    GGAGAGAG TCAGAGAGAGCGCATATAAATACAATGAGCAGGTCGAGCATGGCCG TGTCTTCCTGGTGGTGTTGATAGCCATCAACGTCGTCTGCTTATCCCCACAAGGTGCAACTGCAGCGCCAGAGGGGGAACTTCATAAACTCAACCTTGAGCTGCCACCGCCGTTGCCGCCTGGGAAGGAACCCTCAACGGAGGCGTACCGGTTCACCCAACAAGTCTGCGATTTTGGAACTAACACCTTCACGGAACA ATGATCGGTG CCG TGCTACG TGTACTCATCCCCNATGGCGAANCATTCAAGGGCAACCAAGTTAAAGGCACTCAAGTGGGCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU094164             [                                                                                                                                                                                                                                                                                                                                                             cCCAAGTGAAGGCCACTCAGGTGNCCACCATCATCTTAGTCACCAAGATCCAAGCCCTCACTAGTGAGGCGTACGCGATAAGAGACATGGGCATCAGGGACGAAAACATCAATAACTGCGGGTCTTTCTTTGCCATTGGCGAAACCTTTTCGGACACCACCAACTCGACGCTATACGCGCTCGAGCGCCTCACTGCCGCCGGAGAAGGTAAACGCAGTAAGGAGGACCTGGAAACTGTGCACAAGTGGACCAAGAATTTGGAGACCCAATACGATGAGACCGCGAGCAAGTGCAAGTTAGGTGATCTGTT CAAGTACGGTGACAAGAAGGTTCCCACCGTTTGGGTCATAGACCTGCTCACGACCACAGCCATCCGCCTCCTCAATGCCATAAAGCCATGATTGATCGATCGATCATCCCTTCAATCTTAGCTATATATACCTTCCACTAAATTTTTTTTATTTATATTTTGGATAATTCCCATGATATATATGTAATAAGTGCGTGATGCGCATGGATATCGCATGCATGCTGCATTTGTAACATTGTTATCAATATTTGAAAATATTTTTTTCAAaaaaa                                                                           ]
[+] EMBL C99122               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCCAGTTAGGTGATCTGTTCCAAGTACGGTGACAAGAAGTTCCCCACCGTTTGGGTCATAGACCTGCTCACGACCACAGCCACCCGCCTCCTCAATGCCATAAAGCCATGATTGATCGATCGATCATCCCTTCAATCTTAGCTATATATACCTTCCACTAAATTTTTTTTATTTATATTTTGGATAATTCCCATGATATATATGTAATAAGTGCGTGATGCGCATGGATATCGCATGCATGCTGCATTTGTAACATTGTTATCAATATTTGAAAATATTTTTTTCAATATTGTAATTACTAGCAAAGTGTGTCGATGTGTTGTAACGGACCGAAAAACCAAAATGCAATAATGGTTAAGCTGAAAAA]


>consensus_8766#0 ACTAATCCATCCTGTAGCTTCTAATCAAACTGAGAGGGAGAGAGATCAGAGAGAGCGCAT ATAAATACAATGAGCAGGTCGAGCATGGCCGCTGTCTTCCTGGTGGTGTTGATAGCCATC AACGTCGTCTGCTTATCCCCACAAGGTGCAACTGCAGCGCCAGAGGGGGAACTTCATAAA CTCAACCTTGAGCTGCCACCGCCGTTGCCGCCTGGGAAGGAACCCTCAACGGAGGCGTAC CGGTTCACCCAACAAGTCTGCGATTTTGGAACTAGCACCTTCACGGAACAGATGATCGGT GCCCGCTGCTACGATGTACTCATCCCGTATGGCGAGTCATTCAAGGGCAACCAAGTGAAG GCCACTCAGGTGGCCACCATCATCTTAGTCACCAAGATCCAAGCCCTCACTAGTGAGGCG TACGCGATAAGAGACATGGGCATCAGGGACGAAAACATCAATAACTGCGGGTCTTTCTTT GCCATTGGCGAAACCTTTTCGGACACCACCAACTCGACGCTATACGCGCTCGAGCGCCTC ACTGCCGCCGGAGAAGGTAAACGCAGTAAGGAGGACCTGGAAACTGTGCACAAGTGGACC AAGAATTTGGAGACCCAATACGATGAGACCGCGAGCAAGTGCAAGTTAGGTGATCTGTTC AAGTACGGTGACAAGAAGGTTCCCACCGTTTGGGTCATAGACCTGCTCACGACCACAGCC ATCCGCCTCCTCAATGCCATAAAGCCATGATTGATCGATCGATCATCCCTTCAATCTTAG CTATATATACCTTCCACTAAATTTTTTTTATTTATATTTTGGATAATTCCCATGATATAT ATGTAATAAGTGCGTGATGCGCATGGATATCGCATGCATGCTGCATTTGTAACATTGTTA TCAATATTTGAAAATATTTTTTTCAATATTGTAATTACTAGCAAAGTGTGTCGATGTGTT GTAACGGACCGAAAAACCAAAATGCAATAATGGTTAAGCTGACAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)