cluster # 877

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Oryza sativa
cluster # 877 cluster # 877 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_877#0 length = 259 sequences # 1

consensus_877#1 length = 224 sequences # 1

consensusID : consensus_877#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGCGTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANCAAGCGGCGCGCAANGGTCG]

[+] EMBL OSS11450A            [GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGCGTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANCAAGCGGCGCGCAANGGTCG]




>consensus_877#0
GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGAT
GTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGC
GTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGG
CCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANC
AAGCGGCGCGCAANGGTCG

consensusID : consensus_877#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGGTGCGGCGGCGGCGGCGTCGTGCCCGGCGACGNCNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANCA]

[+] EMBL C74566               [TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGGTGCGGCGGCGGCGGCGTCGTGCCCGGCGACGNCNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANCA]




>consensus_877#1
TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGATGTCGGTGTTGGCGGTG
GCGGCGGTGCTCGTTGTGGCCGGCACGGTGCGGCGGCGGCGGCGTCGTGCCCGGCGACGN
CNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGGCCGTGCTCGCCGCTGGG
GGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_877#0      GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGAT 60
consensus_877#1      ----------------TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGAT 44
                                     ***************************** **************

consensus_877#0      GTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGC 120
consensus_877#1      GTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACG-GTGCGGCGGCGGCGGC 103
                     ******************************************* * **** ** ******

consensus_877#0      GTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGG 180
consensus_877#1      GTCGTGCCCGGCGACGNCNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGG 163
                     ****************   **  ********* ***** ***** ***** ** ******

consensus_877#0      CCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANC 240
consensus_877#1      CCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANC 223
                     ************************************* * ************ *******

consensus_877#0      AAGCGGCGCGCAANGGTCG 259
consensus_877#1      A------------------ 224
                     *