|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1436 fasta sequence
[GACAGGGACGCTAACAAAGGGAAGACCAGTAGTTACTTCTATAGCTTCTTTAGCATATGAGGAGGCGGAGATTCTTCGTCTCGCCGCTGCAGTGGAGAAAACAGCATTGCATCCTATCGCAAATGCTATAATGGAGGAGGCCGAACTTCTCAAACTAGATATCCCAGCCACAAGTGGTCAACTTACAGAGCCTGGTTTTGGCTGTTTGGCAGAAGTAGATGGGTGCTTGGTTGCAGTAGGCACTTTGGACTGGGTCCACAATCGATTTGAGACCAAGGCATCGTCAACTGAACTGACAGATCTCGGAAATCATCTAGAGTTTGTGTCTTCCAGTGAGGCATCATCTAATCACTCAAAATCAATTTGCTTATGTTGGCCCGTGAAGGAGAAAGAATAATAGGTGCTATCGCTGTATCAGATGTTCTGCGTGATGATGCCCAAGCCACCCGGGACAGGCTTCAGCAGGAAGAAATCTTTGCATTTCTACTATCAGGAAACAGGAAAAAAGCAGTTGAAAGCATTGGGAGAACT-GTAGGGATCAGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTACAGGATCATAGAGTGACCATCAACTCCGGCGCAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTTTGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAGTGTTGTATTGCCACGGCCCCAAAACATTATCATGGGGGACTAAAAGTTATTAGAGCTTGATTTTTTTTCATTGAAAAGTTATTAGAGCAACGATGGTACAGTTTACATAGCTGCTATCCGACACGAGTGTACTCGATGTATTTGATAAAGAATAGTAACAGTCAGTTCATATTTAAGCGAAAAAAAACAAAAAAGGGA]
[+] EMBL BI118698 [GACAGGGACGCTAACAAAGGGAAGACCAGTAGTTACTTCTATAGCTTCTTTAGCATATGAGGAGGCGGAGATTCTTCGTCTCGCCGCTGCAGTGGAGAAAACAGCATTGCATCCTATCGCAAATGCTATAATGGAGGAGGCCGAACTTCTCAAACTAGATATCCCAGCCACAAGTGGTCAACTTACAGAGCCTGGTTTTGGCTGTTTGGCAGAAGTAGATGGGTGCTTGGTTGCAGTAGGCACTTTGGACTGGGTCCACAATCGATTTGAGACCAAGGCATCGTCAACTGAACTGACAGATCTCGGAAATCATCTAGAGTTTGTGTCTTCCAGTGAGGCATCATCTAATCACTCAAAATCAATTTGCTTATGTTGGCCCGTGAAGGAGAAAGAATAATAGGTGCTATCGCTGTATCAGATGTTCTGCGTGATGATGCCCAAGCCACCCGGGACAGGCTTCAGCAGGAAGAAATCTTTGCATTTCTACTATCAGGAAACAGGAAAAAAACAGTTGAAAGCATTTGGAGAACTGGAAGGGATCAGAAATGGAAAC TTAAGTCATCCTTACTTCCACATGAAAAGGCAGGCATTATAATTGCATTGCAAGGAGAGGGACGTCGGG TGCAATGGTTGGGGACGGAATAAATGATGCACCATCTTTAGCAGCTG TGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATC ]
[-] EMBL CB627958 [ AAGAAGCAGTTGAAAGCATTGGGAGAACT GTAGGGATCAGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTACAGGATCATAGAGTGACCATCAACTCCGGCGCAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTTTGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAGTGTTGTATTGCCACGGCCCCAAAACATTATCATGGGGGACTAAAAGTTATTAGAGCTTGATTTTTTTTCATTGAAAAGTTATTAGAGCAACGATGGTACAGTTTAC ]
[-] EMBL CB659141 [ AAGCAGTTGAAAGCATTGGGAGAACT GTAGGGATCAGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTACAGGATCATAGAGTGACCATCAACTCCGGCGCAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTTTGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAGTGTTGTATTGCCACGGCCCCAAAACATTATCATGGGGGACTAAAAGTTATTAGAGCTTGATTTTTTTTCATTGAAAAGTTATTAGAGCAACGATGGTAC ]
[-] EMBL CB677305 [ CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTTTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTTTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTACAGGATCATAGAGTGACCATCAACTCCGGCGCAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTTTGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAGTGTTGTATTGCCACGGCCCCAAAACATTATCATGGGGGACTAAAAGTTATTAGAGCTTGATTTTTTTTCATTGAAAAGTTATTAGAGCAACGATGGTACAGTTTACATAGCTGCTATCCGACACGAGTGTACTCGATGTATTTGATAAAGAATAGTAACAGTCAGTTCATATTTAAGCGAAAAAAAACAAAAAAGGGA]
consensusID : consensus_8773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence
[TGGNGAACAAGTNAAACAGCTCTGGTGAAANTGCTGCCTCTGACCCNGCTTCACTTGTTCTATTAGGAAANANACTTTCTCACGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTACCTGGGCTGTCGCATATAACATAGTANCTATCCCTATTGCCCCCNGGGTGTTGCTGCCTCAATTTGATTTCNCCATGACACCATCTCTATCANAATTACGGAAAAACAACGGGAAGATCTGAACTCCANCTGAATTAAATTTGCTCNCAAACNCCNTCNAATTTTGTCCANTTTGCATATCCCCNCATCCCTNTNATGGAATTGGCTAACTGCTTTGAAATCCNCACATNTTCCNGGATCNTNNAATTNACCATCNACTCCNGCGCAANCNTTCATACNTN]
[+] EMBL BE228587 [TGGNGAACAAGTNAAACAGCTCTGGTGAAANTGCTGCCTCTGACCCNGCTTCACTTGTTCTATTAGGAAANANACTTTCTCACGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTACCTGGGCTGTCGCATATAACATAGTANCTATCCCTATTGCCCCCNGGGTGTTGCTGCCTCAATTTGATTTCNCCATGACACCATCTCTATCANAATTACGGAAAAACAACGGGAAGATCTGAACTCCANCTGAATTAAATTTGCTCNCAAACNCCNTCNAATTTTGTCCANTTTGCATATCCCCNCATCCCTNTNATGGAATTGGCTAACTGCTTTGAAATCCNCACATNTTCCNGGATCNTNNAATTNACCATCNACTCCNGCGCAANCNTTCATACNTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8773#0 GACAGGGACGCTAACAAAGGGAAGACCAGTAGTTACTTCTATAGCTTCTTTAGCATATGA 60
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 GGAGGCGGAGATTCTTCGTCTCGCCGCTGCAGTGGAGAAAACAGCATTGCATCCTATCGC 120
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 AAATGCTATAATGGAGGAGGCCGAACTTCTCAAACTAGATATCCCAGCCACAAGTGGTCA 180
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 ACTTACAGAGCCTGGTTTTGGCTGTTTGGCAGAAGTAGATGGGTGCTTGGTTGCAGTAGG 240
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 CACTTTGGACTGGGTCCACAATCGATTTGAGACCAAGGCATCGTCAACTGAACTGACAGA 300
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 TCTCGGAAATCATCTAGAGTTTGTGTCTTCCAGTGAGGCATCATCTAATCACTCAAAATC 360
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 AATTTGCTTATGTTGGCCCGTGAAGGAGAAAGAATAATAGGTGCTATCGCTGTATCAGAT 420
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 GTTCTGCGTGATGATGCCCAAGCCACCCGGGACAGGCTTCAGCAGGAAGAAATCTTTGCA 480
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 TTTCTACTATCAGGAAACAGGAAAAAAGCAGTTGAAAGCATTGGGAGAACTGTAGGGATC 540
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 AGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCA 600
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 TTGCAAGGAGAGGGACGTCGGGTTGCAATGGTTGGGGATGGAATAAATGATGCACCATCT 660
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 TTAGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCT 720
consensus_8773#1 -------------------TGGNGAACAAGTNAAACAGCTCTGGTGAAANTGCTGCCTCT 41
* * * ** * *** ** * **********
consensus_8773#0 GACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCA 780
consensus_8773#1 GACCCNGCTTCACTTGTTCTATTAGGAAANANACTTTCTCACGTAATGGATGCTTTATCA 101
*** * ****** **************** * ********* ******************
consensus_8773#0 CTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAAC 840
consensus_8773#1 CTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTA-CCTGGGCTGTCGCATATAAC 160
*************************************** ********************
consensus_8773#0 ATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACA 900
consensus_8773#1 ATAGTANCTATCCCTATTGCCCCCNGGGTGTTGCTGCCTCAATTTGATTTCNCCATGACA 220
****** ************** ** ************************** ********
consensus_8773#0 CCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTA 960
consensus_8773#1 CCATCTCTATCANA---------------------------------------------- 234
************
consensus_8773#0 CTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCC 1020
consensus_8773#1 ---------------------------ATTACGGAAAAACAACGGGAAGATCTGAACTCC 267
* *******************************
consensus_8773#0 AGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGC 1080
consensus_8773#1 AN-CTGAATTAAATTTGCTCNCAAACNCCNTCNAATTTTGTCCANTTTGCATATCCCCNC 326
* ***************** ** ** * ** ***** ***** ********** ** *
consensus_8773#0 ATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTAC-AGGATCATAGA 1139
consensus_8773#1 ATCCCTNTNATGGAATTGGCTAACTGCTTTGAAATC-CNCACATNTTCCNGGATCNTNNA 385
**** * *********** *********** *** * ***** * * ***** * *
consensus_8773#0 GT-GACCATCAACTCCGGCGCAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTT 1198
consensus_8773#1 ATTNACCATCNACTCCNGCGCAANCNTTCATACNTN------------------------ 421
* ****** ***** ****** * * ***** *
consensus_8773#0 TGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAGTGTTGTATTGCCACGGCCCC 1258
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 AAAACATTATCATGGGGGACTAAAAGTTATTAGAGCTTGATTTTTTTTCATTGAAAAGTT 1318
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 ATTAGAGCAACGATGGTACAGTTTACATAGCTGCTATCCGACACGAGTGTACTCGATGTA 1378
consensus_8773#1 ------------------------------------------------------------
consensus_8773#0 TTTGATAAAGAATAGTAACAGTCAGTTCATATTTAAGCGAAAAAAAACAAAAAAGGGA 1436
consensus_8773#1 ----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||