These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1013 fasta sequence [CTCGCCTCGGTTGTTTCGTCCCAGGAAACTCGATTCTGCTTCTGAATCGGATTTTCCCAGGGATTTCGCCGGCGGCTAGGATCGGGTCGGGGGTCCGCCATGGCCGACGTGTTCGAGGGCTACGAGCGCCAGTACTGCGAGATCTCCGCCTCCCTCGCCCGCAAGTGCACCGCTGCCTCCGCTCTCCAAGGAGAGAAGCTGAAGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGAAAGGAACGTTGAAGAGGGTCACCACCGGTAACGCGCAGCAAGGGTCGAGGGAAGAGTTGCTGGAGTCAGGAATGGCTGAAACGTTGGGGGTATCTGCTGATCAAAAGTCAAGATTGCTCAGGATAACTGAAAAGCAAAATAAAACAACCGATAGGATCAGAGATAGCCACAGAACTATGCTGGAGACTGAAGATCTTGGAGTCTCCCTCTTGCAGGACCTGCATCAACAGCGTGAACGTCTAATACATGCTCATGGCACATTGGATAACGTGGATGACAACATCGGGAAGAGTAGAAGGATCATGGGTGCCATGGTGAGGAGGATGGACAGGAACAAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGTTTTGTCTTATTTCTTTTTTTGGGTTTGGACGAAACCATTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGTAAAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK102003 [CTCGCCTCGGTTGTTTCGTCCCAGGAAACTCGATTCTGCTTCTGAATCGGATTTTCCCAGGGATTTCGCCGGCGGCTAGGATCGGGTCGGGGGTCCGCCATGGCCGACGTGTTCGAGGGCTACGAGCGCCAGTACTGCGAGATCTCCGCCTCCCTCGCCCGCAAGTGCACCGCTGCCTCCGCTCTCCAAGGAGAGAAGCTGAAGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGAAAGGAACGTTGAAGAGGGTCACCACCGGTAACGCGCAGCAAGGGTCGAGGGAAGAGTTGCTGGAGTCAGGAATGGCTGAAACGTTGGGGGTATCTGCTGATCAAAAGTCAAGATTGCTCAGGATAACTGAAAAGCAAAATAAAACAACCGATAGGATCAGAGATAGCCACAGAACTATGCTGGAGACTGAAGATCTTGGAGTCTCCCTCTTGCAGGACCTGCATCAACAGCGTGAACGTCTAATACATGCTCATGGCACATTGGATAACGTGGATGACAACATCGGGAAGAGTAGAAGGATCATGGGTGCCATGGTGAGGAGGATGGACAGGAACAAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGTTTTGTCTTATTTCTTTTTTTGGGTTTGGACGAAACCATTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGTAAAAAAAGTGAGAAGGTTTTGAGTATCTGATAGT ] [+] EMBL C28260 [ CTCGATTCTNCTTCTGAATCGGATTTTCCCAGGGATTTCGCCGGCGGCTAGGATCGGGTCGGGGGTCCGCCATGGCCGACGTGTTCGAGGGCTACGAGCGCCAGTACTGCGAGATCTCCGCCTCCCTCGCCCGCAAGTGCACCGCTGCCTCCGCTCTCCAAGGAGAGAAGCTGAAGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGAAA GAACGTTGAAGAGGGTCACCACCGGTAACGCGCAGAAGGGGTCGAGGGAAGAGTTTCTGGAGTCAGGAATGGCTNAAACGTTNGGGGTATCTGCTGAT ] [+] EMBL CF334951 [ GTGCCATGGTGAGGAGGATGGACAGGAACAAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGTTTTGTCTTATTTCTTTTTTTGGGTTTGGACGAAACCATTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGTAAAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 415 fasta sequence [CGGGAAGAGTAGAAGGATCACTGGGTGCCACTGGTGAGGAGGATGGACCAGGAACCACAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACCTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGCNCTTTGTCCTATTTCTTTTTTTGGGTTTGGACGAAACCACTTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGT-AAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATC-AATGGATTTTCATTTATAATTCTGGACAGCTCNAATAAATG-ACCATTTTGTGCA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BM038924 [CGGGAAGAGTAGAAGGATCACTGGGTGCCACTGGTGAGGAGGATGGACCAGGAACCACAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACCTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGCNCTTTGTCCTATTTCTTTTTTTGGGTTTGGACGAAACCACTTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGT AAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATC AATGGATTTTCATTTATAATTCTGGACAGCTCNAATAAATG ACCATTTTGTGCA AAAA ] [+] EMBL C97620 [ TCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCG TTTTGTCTTATTTCTTTTTTTGGGTTTGGACGAAACCA TTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGTAAAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAAATGGATTTTCATTTATAATTNTGGACAGCT AAATAAATGNGCAATTTTGTGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8776#0 CTCGCCTCGGTTGTTTCGTCCCAGGAAACTCGATTCTGCTTCTGAATCGGATTTTCCCAG 60 consensus_8776#1 ------------------------------------------------------------ consensus_8776#0 GGATTTCGCCGGCGGCTAGGATCGGGTCGGGGGTCCGCCATGGCCGACGTGTTCGAGGGC 120 consensus_8776#1 ------------------------------------------------------------ consensus_8776#0 TACGAGCGCCAGTACTGCGAGATCTCCGCCTCCCTCGCCCGCAAGTGCACCGCTGCCTCC 180 consensus_8776#1 ------------------------------------------------------------ consensus_8776#0 GCTCTCCAAGGAGAGAAGCTGAAGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGG 240 consensus_8776#1 ------------------------------------------------------------ consensus_8776#0 GCCGAGGCACTGATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGG 300 consensus_8776#1 ------------------------------------------------------------ consensus_8776#0 GCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGAAAGGAACG 360 consensus_8776#1 ------------------------------------------------------------ consensus_8776#0 TTGAAGAGGGTCACCACCGGTAACGCGCAGCAAGGGTCGAGGGAAGAGTTGCTGGAGTCA 420 consensus_8776#1 ------------------------------------------------------------ consensus_8776#0 GGAATGGCTGAAACGTTGGGGGTATCTGCTGATCAAAAGTCAAGATTGCTCAGGATAACT 480 consensus_8776#1 ------------------------------------------------------------ consensus_8776#0 GAAAAGCAAAATAAAACAACCGATAGGATCAGAGATAGCCACAGAACTATGCTGGAGACT 540 consensus_8776#1 ------------------------------------------------------------ consensus_8776#0 GAAGATCTTGGAGTCTCCCTCTTGCAGGACCTGCATCAACAGCGTGAACGTCTAATACAT 600 consensus_8776#1 ------------------------------------------------------------ consensus_8776#0 GCTCATGGCACATTGGATAACGTGGATGACAACATCGGGAAGAGTAGAAGGATCA-TGGG 659 consensus_8776#1 -----------------------------------CGGGAAGAGTAGAAGGATCACTGGG 25 ******************** **** consensus_8776#0 TGCCA-TGGTGAGGAGGATGGAC-AGGAACAA--GTGGATCATAGGTTTCATTATAGCTC 715 consensus_8776#1 TGCCACTGGTGAGGAGGATGGACCAGGAACCACAGTGGATCATAGGTTTCATTATAGCTC 85 ***** ***************** ****** * ************************** consensus_8776#0 TCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCAC-TGAGGGACTCCT 774 consensus_8776#1 TCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACCTGAGGGACTCCT 145 *********************************************** ************ consensus_8776#0 TGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGTT--TTGTCTTATT 832 consensus_8776#1 TGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGCNCTTTGTCCTATT 205 ********************************************** ***** **** consensus_8776#0 TCTTTTTTTGGGTTTGGACGAAACCA-TTTCATGTGGTGGTTGTGAATGTGTTTTGGTCA 891 consensus_8776#1 TCTTTTTTTGGGTTTGGACGAAACCACTTTCATGTGGTGGTTGTGAATGTGTTTTGGTCA 265 ************************** ********************************* consensus_8776#0 TGTAAAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAAAAAA------- 944 consensus_8776#1 TGTAAAAAA-GTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAATGGATTTTCAT 324 ********* *************************************** * consensus_8776#0 -----------AAAAAAAAAAAAAAAAAA-----------AAAAAAAAAAAAAAAAAAAA 982 consensus_8776#1 TTATAATTCTGGACAGCTCNAATAAATGACCATTTTGTGCAAAAAAAAAAAAAAAAAAAA 384 * * ** *** * ******************** consensus_8776#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1013 consensus_8776#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 415 ******************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||