These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 542 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTAAGGTAAAATTTAACTATTTCAATACGATTAAAAAACCACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAGCCACCATTTGATGACAACAACAGGGTTGAAGGATATAGAAAGATTCATGCTTATTATATGATCCTCATTCAGCCATTCCGTTTAACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACCATCACATGATATATATGCTACAAACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACNCGAGGGGAGGGAGGGAGTGAGCTTACCGGNAGCACCGCTGCCCCCCTTGTCTCGT] [+] EMBL CA761889 [TTTTTTTTTTTTTTTTTTTTTTAAGGTAAAATTTAACTATTTCAATACGATTAAAAAACCACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAGCCACCATTTGATGACAACAACAGGGTTGAAGGATATAGAAAGATTCATGCTTATTATATGATCCTCATTCAGCCATTCCGTTTAACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACCATCACATGATATATATGCTACAAACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACNCGAGGGGAGGGAGGGAGTGAGCTTACCGGNAGCACCGCTGCCCCCCTTGTCTCGT] [+] EMBL CA761943 [TTTTTTTTTTTTTTTTTTTTTTAAGGTAAAATTTAACTATTTCAATACGATTAAAAAACCACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAGCCACCATTTGATGACAACAACAGGGTTGAAGGATATAGAAAGATTCATGCTTATTATATGATCCTCATTCAGCCATTCCGTTTAACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACCATCACATGATATATATGCTACAAACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACNCGAGGGGAGGGAGGGAGTGAGCTTACCGGNAGCACCGCTGCCCCCCTTGTCTCGT] consensusID : consensus_8784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [TTTTTTTTTTTGTAAAAAAAAAAATACTGAACCAACCATCCATCTATTTCATTGTAATGACTTTTTGTTGGTGATATATACATATACATATAAAACTGCAAACTCAATCAGCCCACCATTGACTGTTGGTGACCTTCTAAAATCAAAGGTCATGGTCACATGAGACAAAGTGATTCAAAGATGATAGTGTGCAGGTATAAGTTAAAATTTAACTATTTCAATACGATTAAGAAACCACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAACCACCATTTGATGACAACAACAGGGTTGAAGGATATAGAAAGATCCATGCTTATTATATGATCCTCATTCAGCCATTCCTTTTAACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACCATCACATGATATATATGCTACAAACCTACAAGGCAATTACGGAAACGGTAACAAAACTGAA] [+] EMBL CF334262 [TTTTTTTTTTTGTAAAAAAAAAAATACTGAACCAACCATCCATCTATTTCATTGTAATGACTTTTTGTTGGTGATATATACATATACATATAAAACTGCAAACTCAATCAGCCCACCATTGACTGTTGGTGACCTTCTAAAATCAAAGGTCATGGTCACATGAGACAAAGTGATTCAAAGATGATAGTGTGCAGGTATAAGTTAAAATTTAACTATTTCAATACGATTAAGAAACCACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAACCACCATTTGATGACAACAACAGGGTTGAAGGATATAGAAAGATCCATGCTTATTATATGATCCTCATTCAGCCATTCCTTTTAACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACCATCACATGATATATATGCTACAAACCTACAAGGCAATTACGGAAACGGTAACAAAACTGAA] consensusID : consensus_8784#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 454 fasta sequence [CCAACCCACCAAAATTTTCATATCTCCTAACCAAACAAAGCAATTAATAGCTCTCAATCCCTCTTAAAAACT-CCCCTCAACCATAAAAGAAATCCAAAGTTTGGCCTCTCACCTTGACCATCAGTTACAGGAATTAAAAGGCGGATTATTACAGTGAAATAGGTGGCTATTACTCACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACGCGAGGGGAGGGAGGGAGTGAGNTGAGCGGCAGCACCGCTGCACGCGCCCTGGCTGTCGCTGCGTGCAATGCGGGAGGAGGGGAAGGGGAACCAGGCGGCGCCGCATCTGCGTGGGTGGA] [-] EMBL CB637335 [CCAACCCACCAAAATTTTCATATCTCCTAACCAAACAAAGCAATTAATAGCTCTCAATCCCTCTTAAAAACT CCCCTCAACCATAAAAGAAATCCAAAGTTTGGCCTCTCACCTTGACCATCAGTTACAGGAATTAAAAGGCGGATTATTACAGTGAAATAGGTGGCTATTACTCACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACGCGAGGGGAGGGAGGGAGTGAGNTGAGCGGCAGCACCGCTGCACGCGCCCTGGCTGTCG ] [-] EMBL CF334261 [ TTTTCATATCTCCTAACCAAACAAAGCAATTAATAGCTCTCAATCCCTCTTAAAAACTCCCCCTCAACCATAAAAGAAATCCAAAGTTTGGCCTCTCACCTTGACCATCAGTTACAGGAATTAAAAGGCGGATTATTACAGTGAAATAGGTGGCTATTACTCACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACGCGAGGGGAGGGAGGGAGTGAGCTGAGCGGCAGCACCGCTGCACGCGCCCTGGCTGTCGCTGCGTGCAATGCGGGAGGAGGGGAAGGGGAACCAGGCGGCGCCGCATCTGCGTGGGTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8784#0 ------------------------------------------------------------ consensus_8784#1 TTTTTTTTTTTGTAAAAAAAAAAATACTGAACCAACCATCCATCTATTTCATTGTAATGA 60 consensus_8784#2 ------------------------------------------------------------ consensus_8784#0 ------------------------------------------------------------ consensus_8784#1 CTTTTTGTTGGTGATATATACATATACATATAAAACTGCAAACTCAATCAGCCCACCATT 120 consensus_8784#2 --------------------------------------CCAACCCACCAAAATTTTCATA 22 consensus_8784#0 --------------------------------------------------------TTTT 4 consensus_8784#1 GACTGTTGGTGACCTTCTAAAATCAAAGGTCATGGTCACATGAGACAAAGTGATTCAAAG 180 consensus_8784#2 TCTCCTAACCAAACAAAGCAATTAATAGCTCTCAATCCCTCTTAAAAACTCCCCTCAACC 82 consensus_8784#0 TTTTTTTTTTTTTTTTTTAAGGTAAAATTTAACTATTTCAATACGATTAAAAAACCACCA 64 consensus_8784#1 ATGATAGTGTGCAGGTATAAGTTAAAATTTAACTATTTCAATACGATTAAGAAACCACCA 240 consensus_8784#2 ATAAAAGAAATC---CAAAGTTTGGCCTCTCACCTTGACCATCAGTTACAGGAATTAAAA 139 * * * * * ** * * ** * * * ** * * consensus_8784#0 TAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCA 124 consensus_8784#1 TAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCA 300 consensus_8784#2 GGCGGATTATTACAGTGAAATAGGTGGCTATTACTCACCAGGGA----GGTGAAGGGTGA 195 * * * * * * * * ** * * ** *** ** * consensus_8784#0 GTCCACCTTGAATTCGTTCTTA-ACATGAAAAAGCCACCATTTGATGACAACAACAGGGT 183 consensus_8784#1 GTCCACCTTGAATTCGTTCTTA-ACATGAAAAAACCACCATTTGATGACAACAACAGGGT 359 consensus_8784#2 ATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGC-GATGGGAGAGAAAGAGC 254 * * *** * * * * *** ** *** **** * * ** * consensus_8784#0 TGAAGGATATAGAAA---GATTCATGCTTATTATATGATCCTCATTCA-GCCATTCCGTT 239 consensus_8784#1 TGAAGGATATAGAAA---GATCCATGCTTATTATATGATCCTCATTCA-GCCATTCCTTT 415 consensus_8784#2 CACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCT 314 ** *** * * * * **** ** * * * * * * * * consensus_8784#0 TAACATATGACAGG---GGCATCTGAAAATATTTCCAACCAAC--GCCGGCCATACCATA 294 consensus_8784#1 TAACATATGACAGG---GGCATCTGAAAATATTTCCAACCAAC--GCCGGCCATACCATA 470 consensus_8784#2 GCCCAGGTAAGGGAACCGACGCGAGGGGAGGGAGGGAGTGAGNTGAGCGGCAGCACCGCT 374 ** * * * * * * * * * **** *** consensus_8784#0 AAAT-TGAACCATCACATGATATATATGCTACAAACCAGGGAGGTGAAGGGTGAATTCGT 353 consensus_8784#1 AAAT-TGAACCATCACATGATATATATGCTACAAACCTACAAGGCAATTACGGAAACGGT 529 consensus_8784#2 GCACGCGCCCTGGCTGTCGCTGCGTGCAATGCGGGAGGAGGGGAAGGGGAACCAGGCGGC 434 * * * * * * * * * * * * consensus_8784#0 TTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCC 413 consensus_8784#1 AACAAAACTGAA------------------------------------------------ 541 consensus_8784#2 GCCGCATCTGCGTGGGTGGA---------------------------------------- 454 * * consensus_8784#0 TATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGG 473 consensus_8784#1 ------------------------------------------------------------ consensus_8784#2 ------------------------------------------------------------ consensus_8784#0 TAAGGGAACCGACNCGAGGGGAGGGAGGGAGTGAGCTTACCGGNAGCACCGCTGCCCCCC 533 consensus_8784#1 ------------------------------------------------------------ consensus_8784#2 ------------------------------------------------------------ consensus_8784#0 TTGTCTCGT 542 consensus_8784#1 --------- consensus_8784#2 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||