Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8786 cluster # 8786       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8786#0 length = 1240 sequences # 5  

consensusID : consensus_8786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1240
fasta sequence
                              [CAAGCTCGTCTCGTTGATCAATGGCATCAGACAAGTGCTCATCGTTTCTACTAGCAGCGGCAGCGGCTGCAGTGCTCGTCCTCGCGTCGGCGCCGGTGGCTCATTCGTGGAGCAAGGAGGGTCACATGCTCACATGCCGAATCGCGCAGGATCTGCTGGAGCCAGCCGCGGCGCACGCGGTGAGGAACCTGCTGACGGAGGAGGCGGACGGCGACCTGTCGGCGCTGTGCGTGTGGCCGGATCAGGTCAGGCACTGGTACAAGTACAGGTGGACGAGCCCTCTCCACTTCATCGACACCCCTGACAAAGCCTGCAGCTTCGTCTACTCAAGGGATTGCCATGGCGCGGATGGTGCGGAGGATATGTGCGTCGCTGGCGCGATCGCGAACTTCACCTCTCAGCTTATGCACTATAATCACGGCAGCGCCGATCGCAAATATAACATGACTGAAGCACTGCTATTCTTGTCACACTTCAT-GGGAGATGTTCATCAGCCAATGCATGTTGGGTTCACGAGCGACCAAGGGGGCAATACGATTAATCTACGCTGGTTCAGGCACAAATCCAATCTCCATCATGTGTGGGATA-GGGAGATGATACTCACAGCTATTGCTGAATTCTACGGCAAGGACATGGATGCGTTTCAAAAGGACCTTGTGCACAACTTCACCACGGGAACGTGGTCTGATGACGTATCCTCTTGGGGAGACTGCGAGGATCTCCTGTCTTGCTCAACCAAGTACGCTACAGAGAGCATAAATTTGGCTTGCAAATGGGCGTACAACGATGTCCGTGAAGGCGAAACTCTGTCAGATGACTACTTCGGCTCACGGCTCCCGATCGTGACACGACGAATCGCGCAGGGGGGAGTTAGGCTGGCCATGTTCTTGAATCGGCTCTTCGGGGAGCACAACCGTGACGTCGCATCACCAGCCTGAACTGATAGCTGCTTCAGAATTCAGAAAATTCAGAAGTTAACCACACGTGTAATCTAACGGCCGCATCCATTTCATTTTATTTTTACGTGATACGTGACTCTATTTTTACGATGAATAGTTGATGCCAACAATGCTGATTAATTAACCACATAGTAATACAAGTAAGCAACGCTTGAAATCAACAGGACATAGCAAACCAATTCCATTCTTTTCTGATCATAAAGAGATGTACATCCACATGTATGATTAATTGTATCTAGACAAGATTCAATGACTATACTACTCTCATTGCACCAAAAAAA]

[+] EMBL AK099573             [CAAGCTCGTCTCGTTGATCAATGGCATCAGACAAGTGCTCATCGTTTCTACTAGCAGCGGCAGCGGCTGCAGTGCTCGTCCTCGCGTCGGCGCCGGTGGCTCATTCGTGGAGCAAGGAGGGTCACATGCTCACATGCCGAATCGCGCAGGATCTGCTGGAGCCAGCCGCGGCGCACGCGGTGAGGAACCTGCTGACGGAGGAGGCGGACGGCGACCTGTCGGCGCTGTGCGTGTGGCCGGATCAGGTCAGGCACTGGTACAAGTACAGGTGGACGAGCCCTCTCCACTTCATCGACACCCCTGACAAAGCCTGCAGCTTCGTCTACTCAAGGGATTGCCATGGCGCGGATGGTGCGGAGGATATGTGCGTCGCTGGCGCGATCGCGAACTTCACCTCTCAGCTTATGCACTATAATCACGGCAGCGCCGATCGCAAATATAACATGACTGAAGCACTGCTATTCTTGTCACACTTCAT GGGAGATGTTCATCAGCCAATGCATGTTGGGTTCACGAGCGACCAAGGGGGCAATACGATTAATCTACGCTGGTTCAGGCACAAATCCAATCTCCATCATGTGTGGGATA GGGAGATGATACTCACAGCTATTGCTGAATTCTACGGCAAGGACATGGATGCGTTTCAAAAGGACCTTGTGCACAACTTCACCACGGGAACGTGGTCTGATGACGTATCCTCTTGGGGAGACTGCGAGGATCTCCTGTCTTGCTCAACCAAGTACGCTACAGAGAGCATAAATTTGGCTTGCAAATGGGCGTACAACGATGTCCGTGAAGGCGAAACTCTGTCAGATGACTACTTCGGCTCACGGCTCCCGATCGTGACACGACGAATCGCGCAGGGGGGAGTTAGGCTGGCCATGTTCTTGAATCGGCTCTTCGGGGAGCACAACCGTGACGTCGCATCACCAGCCTGAACTGATAGCTGCTTCAGAATTCAGAAAATTCAGAAGTTAACCACACGTGTAATCTAACAGCCGCATCCATTTCATTTTATTTTTACGTGATACGTGACTCTATTTTTACGATGAATAGTTGATGCCAACAATGCTGATTAATTAACCACATAGTAATACAAGTAAGCAACGCTTGAAATCAACAGGACATAGCAAACCAATTCCATTCTTTTCTGATCATAAAGAGATGTACATCCACATGTATGATTAATTGTATCTAGACA                                       ]
[+] EMBL AK061848             [ AAGCTCGTCTCGTTGATCAATGGCATCAGACAAGTGCTCATCGTTTCTACTAGCAGCGGCAGCGGCTGCAGTGCTCGTCCTCGCGTCGGCGCCGGTGGCTCATTCGTGGAGCAAGGAGGGTCACATGCTCACATGCCGAATCGCGCAGGATCTGCTGGAGCCAGCCGCGGCGCACGCGGTGAGGAACCTGCTGACGGAGGAGGCGGACGGCGACCTGTCGGCGCTGTGCGTGTGGCCGGATCAGGTCAGGCACTGGTACAAGTACAGGTGGACGAGCCCTCTCCACTTCATCGACACCCCTGACAAAGCCTGCAGCTTCGTCTACTCAAGGGATTGCCATGGCGCGGATGGTGCGGAGGATATGTGCGTCGCTGGCGCGATCGCGAACTTCACCTCTCAGCTTATGCACTATAATCACGGCAGCGCCGATCGCAAATATAACATGACTGAAGCACTGCTATTCTTGTCACACTTCAT GGGAGATGTTCATCAGCCAATGCATGTTGGGTTCACGAGCGACCAAGGGGGCAATACGATTAATCTACGCTGGTTCAGGCACAAATCCAATCTCCATCATGTGTGGGATA GGGAGATGATACTCACAGCTATTGCTGAATTCTACGGCAAGGACATGGATGCGTTTCAAAAGGACCTTGTGCACAACTTCACCACGGGAACGTGGTCTGATGACGTATCCTCTTGGGGAGACTGCGAGGATCTCCTGTCTTGCTCAACCAAGTACGCTACAGAGAGCATAAATTTGGCTTGCAAATGGGCGTACAACGATGTCCGTGAAGGCGAAACTCTGTCAGATGACTACTTCGGCTCACGGCTCCCGATCGTGACACGACGAATCGCGCAGGGGGGAGTTAGGCTGGCCATGTTCTTGAATCGGCTCTTCGGGGAGCACAACCGTGACGTCGCATCACCAGCCTGAACTGATAGCTGCTTCAGAATTCAGAAAATTCAGAAGTTAACCACACGTGTAATCTAACGGCCGCATCCATTTCATTTTATTTTTACGTGATACGTGACTCTATTTTTACGATGAATAGTTGATGCCAACAATGCTGATTAATTAACCACATAGTAATACAAGTAAGCAACGCTTGAAATCAACAGGACATAGCAAACCAATTCCATTCTTTTCTGATCATAAAGAGATGTACATCCACATGTATGATTAATTGTATCTAGACAAGATTCAATGACTATACTACTC                 ]
[+] EMBL CF333886             [    CTCGTCTCGTTGATCAATGGCATCAGACAAGTGCTCATCGTTTCTACTAGCAGCGGCAGCGGCTGCAGTGCTCGTCCTCGCGTCGGCGCCGGTGGCTCATTCGTGGAGCAAGGAGGGTCACATGCTCACATGCCGAATCGCGCAGGATCTGCTGGAGCCAGCCGCGGCGCACGCGGTGAGGAACCTGCTGACGGAGGAGGCGGACGGCGACCTGTCGGCGCTGTGCGTGTGGCCGGATCAGGTCAGGCACTGGTACAAGTACAGGTGGACGAGCCCTCTCCACTTCATCGACACCCCTGACAAAGCCTGCAGCTTCGTCTACTCAAGGGATTGCCATGGCGCGGATGGTGCGGAGGATATGTGCGTCGCTGGCGCGATCGCGAACTTCACCTCTCAGCTTATGCACTATAATCACGGCAGCGCCGATCGCAAATATAACATGACTGAAGCACTGCTATTCTTGTCACACTTCATGGGGAGATGTTCATCAGCCAATGCATGTTGGGTTCACGAGCGACCAAGGGGGCAATACGATTAATCTACGCTGGTTCAGGCACAAATCCAATCTCCATCATGTGTGGGATANGGGAGATGATACTCACAGCTATTGCTGAATTCTACGGCAAGGACATGGATGCGTTTCAAAAGGACCTTGTGCACAACTTCACCACGGGAACGTGGTCTGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF276413             [          TCGTTGATCAATGGCATCAGACAAGTGCTCATCGTTTCTACTAGCAGCGGCAGCGGCTGCAGTGCTCGTCCTCGCGTCGGCGCCGGTGGCTCATTCGTGGAGCAAGGAGGGTCACATGCTCACATGCCGAATCGCGCAGGATCTGCTGGAGCCAGCCGCGGCGCACGCGGTGAGGAACCTGCTGACGGAGGAGGCGGACGGCGACCTGTCGGCGCTGTGCGTGTGGCCGGATCAGGTCAGGCACTGGTACAAGTACAGGTGGACGAGCCCTCTCCACTTCATCGACACCCCTGACAAAGCCTGCAGCTTCGTCTACTCAAGGGATTGCCATGGCGCGGATGGTGCGGAGGATATGTGCGTCGCTGGCGCGATCGCGAACTTCACCTCTCAGCTTATGCACTATAATCACGGCAGCGCCGATCGCANATATAACATGACTGAAGCACTGCTATTCTTGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF276412             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CAAGTACGCTACAGAGAGCATAAATTTGGCTTGCAAATGGGCGTACAACGATGTCCGTGAAGGCGAAACTCTGTCAGATGACTACTTCGGCTCACGGCTCCCGATCGTGACACGACGAATCGCGCAGGGGGGAGTTAGGCTGGCCATGTTCTTGAATCGGCTCTTCGGGGAGCACAACCGTGACGTCGCATCACCAGCCTGAACTGATAGCTGCTTCAGAATTCAGAAAATTCAGAAGTTAACCACACGTGTAATCTAACGGCCGCATCCATTTCATTTTATTTTTACGTGATACGTGACTCTATTTTTACGATGAATAGTTGATGCCAACAATGCTGATTAATTAACCACATAGTAATACAAGTAAGCAACGCTTGAAATCAACAGGACATAGCAAACCAATTCCATTCTTTTCTGATCATAAAGAGATGTACATCCACATGTATGATTAATTGTATCTAGACAAGATTCAATGACTATACTACTCTCATTGCACCAAAAAAA]


>consensus_8786#0 CAAGCTCGTCTCGTTGATCAATGGCATCAGACAAGTGCTCATCGTTTCTACTAGCAGCGG CAGCGGCTGCAGTGCTCGTCCTCGCGTCGGCGCCGGTGGCTCATTCGTGGAGCAAGGAGG GTCACATGCTCACATGCCGAATCGCGCAGGATCTGCTGGAGCCAGCCGCGGCGCACGCGG TGAGGAACCTGCTGACGGAGGAGGCGGACGGCGACCTGTCGGCGCTGTGCGTGTGGCCGG ATCAGGTCAGGCACTGGTACAAGTACAGGTGGACGAGCCCTCTCCACTTCATCGACACCC CTGACAAAGCCTGCAGCTTCGTCTACTCAAGGGATTGCCATGGCGCGGATGGTGCGGAGG ATATGTGCGTCGCTGGCGCGATCGCGAACTTCACCTCTCAGCTTATGCACTATAATCACG GCAGCGCCGATCGCAAATATAACATGACTGAAGCACTGCTATTCTTGTCACACTTCATGG GAGATGTTCATCAGCCAATGCATGTTGGGTTCACGAGCGACCAAGGGGGCAATACGATTA ATCTACGCTGGTTCAGGCACAAATCCAATCTCCATCATGTGTGGGATAGGGAGATGATAC TCACAGCTATTGCTGAATTCTACGGCAAGGACATGGATGCGTTTCAAAAGGACCTTGTGC ACAACTTCACCACGGGAACGTGGTCTGATGACGTATCCTCTTGGGGAGACTGCGAGGATC TCCTGTCTTGCTCAACCAAGTACGCTACAGAGAGCATAAATTTGGCTTGCAAATGGGCGT ACAACGATGTCCGTGAAGGCGAAACTCTGTCAGATGACTACTTCGGCTCACGGCTCCCGA TCGTGACACGACGAATCGCGCAGGGGGGAGTTAGGCTGGCCATGTTCTTGAATCGGCTCT TCGGGGAGCACAACCGTGACGTCGCATCACCAGCCTGAACTGATAGCTGCTTCAGAATTC AGAAAATTCAGAAGTTAACCACACGTGTAATCTAACGGCCGCATCCATTTCATTTTATTT TTACGTGATACGTGACTCTATTTTTACGATGAATAGTTGATGCCAACAATGCTGATTAAT TAACCACATAGTAATACAAGTAAGCAACGCTTGAAATCAACAGGACATAGCAAACCAATT CCATTCTTTTCTGATCATAAAGAGATGTACATCCACATGTATGATTAATTGTATCTAGAC AAGATTCAATGACTATACTACTCTCATTGCACCAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)