Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8788 cluster # 8788       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8788#0 length = 1094 sequences # 5  

consensusID : consensus_8788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1094
fasta sequence
                              [ACAGCCACACAAAT-CACAGCCTCCTTCAAACCGGCAGCCGGCGCCGGCTGCTGATCCTCTCCATCGCCGCCGTGGCCGTGCTGCCGGCGTGCCTCCAAATGACTCCGCCCGGCAGTATCAGCACCACCTCGTCGAACCTTCGGGCCCAGCAAAAACCCTCAATTCCCAAGAAACCGTGTGCTTTCGGAGCGCCACCGAGACACCTGCATCGCCCGTGCAAGAAGAACGCTGCCGTCTCGGTGGCGTGCACCGGGCAAGGCGAACAACGATCCAGCCCTGCCATCGCGGCGCCGCAGGAGGCTCAGGCAGGCACGTTTAGCGTCGAGTTCCGGACGCGGGACGGGTGCCGGCTGGGCATCTCCAGGTACCCGGACTTCGCGTACAACGCCCAGGGCGGCCGCGGCGTCGGCGTCGTCGCCAGCAGCGGCGAGGATAGTGGCACGGTTCTGGTCGAGTTCGACGTGTCAAGCCTGTACATCCCGGCGATGTCCGGCGCGACGACCAAGTTCCTCGGGCTGCCGCTGCCGCCGTTCCTCAAGATCGACATCTTGCCCGAGGCTCTCCGCGGAAACATCGATCCAACAAGTGGTCAGGTTGATCTGAAGTTCAGGTCGAGGTTCTGCTTCTCGGTTGGAAGCATCTACCGAGCACCGCCGCTGTTCGTCGACACAACGCTGACCTCCGAGGAGTCCAGTGGAGCCATAAGACGAGGAACTGGAGAAAGGATGGACGGCGAAGGGAGATGCAAGCTGGTAGGGGTGGCCGTCGTCGACCCCATTGATGACGTCTTCATGAACACCTTCCTCAGCCTGCCGACCGAGTGCATCGCTTACTTGAACGCCACCATCTCCATCACTGAACCAAGCTGATCTTGCCTGTTTCAGTTGGTTGTATAGATCTTAATGCGTGGTGAAACGCATGAATGTTGCAGGACGAAACTTGCACGGAAAAGAACAGACTGTACTATTGTAGTATTGGCCAAGGGAATGCCTCTTATTCATACAGATTTTATTTAAAAGAACGACTCATTCATACAGATATTATAAAAGTGGTAAATCCTAGAGAGGGATTAATTTTTTTTCTTGAAAAAAAAA]

[+] EMBL AK068106             [ACAGCCACACAAAT CACAGCCTCCTTCAAACCGGCAGCCGGCGCCGGCTGCTGATCCTCTCCATCGCCGCCGTGGCCGTGCTGCCGGCGTGCCTCCAAATGACTCCGCCCGGCAGTATCAGCACCACCTCGTCGAACCTTCGGGCCCAGCAAAAACCCTCAATTCCCAAGAAACCGTGTGCTTTCGGAGCGCCACCGAGACACCTGCATCGCCCGTGCAAGAAGAACGCTGCCGTCTCGGTGGCGTGCACCGGGCAAGGCGAACAACGATCCAGCCCTGCCATCGCGGCGCCGCAGGAGGCTCAGGCAGGCACGTTTAGCGTCGAGTTCCGGACGCGGGACGGGTGCCGGCTGGGCATCTCCAGGTACCCGGACTTCGCGTACAACGCCCAGGGCGGCCGCGGCGTCGGCGTCGTCGCCAGCAGCGGCGAGGATAGTGGCACGGTTCTGGTCGAGTTCGACGTGTCAAGCCTGTACATCCCGGCGATGTCCGGCGCGACGACCAAGTTCCTCGGGCTGCCGCTGCCGCCGTTCCTCAAGATCGACATCTTGCCCGAGGCTCTCCGCGGAAACATCGATCCAACAAGTGGTCAGGTTGATCTGAAGTTCAGGTCGAGGTTCTGCTTCTCGGTTGGAAGCATCTACCGAGCACCGCCGCTGTTCGTCGACACAACGCTGACCTCCGAGGAGTCCAGTGGAGCCATAAGACGAGGAACTGGAGAAAGGATGGACGGCGAAGGGAGATGCAAGCTGGTAGGGGTGGCCGTCGTCGACCCCATTGATGACGTCTTCATGAACACCTTCCTCAGCCTGCCGACCGAGTGCATCGCTTACTTGAACGCCACCATCTCCATCACTGAACCAAGCTGATCTTGCCTGTTTCAGTTGGTTGTATAGATCTTAATGCGTGGTGAAACGCATGAATGTTGCAGGACGAAACTTGCACGGAAAAGAACAGACTGTACTATTGTAGTATTGGCCAAGGGAATGCC                                                                                                       ]
[+] EMBL CF335865             [ACAGCCACACAAATACACAGCCTCCTTCAAACCGGCAGCCGGCGCCGGCTGCTGATCCTCTCCATCGCCGCCGTGGCCGTGCTGCCGGCGTGCCTCCAAATGACTCCGCCCGGCAGTATCAGCACCACCTCGTCGAACCTTCGGGCCCAGCAAAAACCCTCAATTCCCAAGAAACCGTGTGCTTTCGGAGCGCCACCGAGACACCTGCATCGCCCGTGCAAGAAGAACGCTGCCGTCTCGGTGGCGTGCACCGGGCAAGGCGAACAACGATCCAGCCCTGCCATCGCGGCGCCGCAGGAGGCTCAGGCAGGCACGTTTAGCGTCGAGTTCCGGACGCGGGACGGGTGCCGGCTGGGCATCTCCAGGTACCCGGACTTCGCGTACAACGCCCAGGGCGGCCGCGGCGTCGGCGTCGTCGCCAGCAGCGGCGAGGATAGTGGCACGGTTCTGGTCGAGTTCGACGTGTCAAGCCTGTACATCCCGGCGATGTCCGGCGCGACGACCAAGTTCCTCGGGCTGCCGCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF333269             [ACAGCC CACAAAT  ACAGCCTCCTTCAAACCGGCAGCCGGCGCCGGCTGCTGATCCTCTCCATCGCCGCCGTGGCCGTGCTGCCGGCGTGCCTCCAAATGACTCCGCCCGGCAGTATCAGCACCACCTCGTCGAACCTTCGGGCCCAGCAAAAACCCTCAATTCCCAAGAAACCGTGTGCTTTCGGAGCGCCACCGAGACACCTGCATCGCCCGTGCAAGAAGAACGCTGCCGTCTCGGTGGCGTGCACCGGGCAAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CF333270             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCTGCCGCCGTTCCTCAAGATCGACATCTTGCCCGAGGCTCTCCGCGGAAACATCGATCCAACAAGTGGTCAGGTTGATCTGAAGTTCAGGTCGAGGTTCTGCTTCTCGGTTGGAAGCATCTACCGAGCACCGCCGCTGTTCGTCGACACAACGCTGACCTCCGAGGAGTCCAGTGGAGCCATAAGACGAGGAACTGGAGAAAGGATGGACGGCGAAGGGAGATGCAAGCTGGTTGGGGTGGCCGTCGTCGACCCCATTGATGACGTCTTCATGAACACCTTCCTCAGCCTGCCGACCGAGTGCATCGCTTACTTGAACGCCACCATCTCCATCACTGAACCAAGCTGATCTTGCCTGTTTCAGTTGGTTGTATAGATCTTAATGCGTGGTGAAACGCATGAATGTTGCAGGACGAAACTTGCACGGAAAAGAACAGACTGTACTATTGTAGTATTGGCCAAGGGAATGCCTCTTATTCATACAGATTTTATTTAAAA                                                                            ]
[-] EMBL CF335866             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GACCTCCGAGGAGTCCAGTGGAGCCATAAGACGAGGAACTGGAGAAAGGATGGACGGCGAAGGGAGATGCAAGCTGGTAGGGGTGGCCGTCGTCGACCCCATTGATGACGTCTTCATGAACACCTTCCTCAGCCTGCCGACCGAGTGCATCGCTTACTTGAACGCCACCATCTCCATCACTGAACCAAGCTGATCTTGCCTGTTTCAGTTGGTTGTATAGATCTTAATGCGTGGTGAAACGCATGAATGTTGCAGGACGAAACTTGCACGGAAAAGAACAGACTGTACTATTGTAGTATTGGCCAAGGGAATGCCTTTTATTCATACAGATTTTATTTTTTTGAACGACTCATTCATACAGATATTATAAAAGTGGTAAATCCTAGAGAGGGATTAATTTTTTTTCTTGAAAAAAAAA]


>consensus_8788#0 ACAGCCACACAAATCACAGCCTCCTTCAAACCGGCAGCCGGCGCCGGCTGCTGATCCTCT CCATCGCCGCCGTGGCCGTGCTGCCGGCGTGCCTCCAAATGACTCCGCCCGGCAGTATCA GCACCACCTCGTCGAACCTTCGGGCCCAGCAAAAACCCTCAATTCCCAAGAAACCGTGTG CTTTCGGAGCGCCACCGAGACACCTGCATCGCCCGTGCAAGAAGAACGCTGCCGTCTCGG TGGCGTGCACCGGGCAAGGCGAACAACGATCCAGCCCTGCCATCGCGGCGCCGCAGGAGG CTCAGGCAGGCACGTTTAGCGTCGAGTTCCGGACGCGGGACGGGTGCCGGCTGGGCATCT CCAGGTACCCGGACTTCGCGTACAACGCCCAGGGCGGCCGCGGCGTCGGCGTCGTCGCCA GCAGCGGCGAGGATAGTGGCACGGTTCTGGTCGAGTTCGACGTGTCAAGCCTGTACATCC CGGCGATGTCCGGCGCGACGACCAAGTTCCTCGGGCTGCCGCTGCCGCCGTTCCTCAAGA TCGACATCTTGCCCGAGGCTCTCCGCGGAAACATCGATCCAACAAGTGGTCAGGTTGATC TGAAGTTCAGGTCGAGGTTCTGCTTCTCGGTTGGAAGCATCTACCGAGCACCGCCGCTGT TCGTCGACACAACGCTGACCTCCGAGGAGTCCAGTGGAGCCATAAGACGAGGAACTGGAG AAAGGATGGACGGCGAAGGGAGATGCAAGCTGGTAGGGGTGGCCGTCGTCGACCCCATTG ATGACGTCTTCATGAACACCTTCCTCAGCCTGCCGACCGAGTGCATCGCTTACTTGAACG CCACCATCTCCATCACTGAACCAAGCTGATCTTGCCTGTTTCAGTTGGTTGTATAGATCT TAATGCGTGGTGAAACGCATGAATGTTGCAGGACGAAACTTGCACGGAAAAGAACAGACT GTACTATTGTAGTATTGGCCAAGGGAATGCCTCTTATTCATACAGATTTTATTTAAAAGA ACGACTCATTCATACAGATATTATAAAAGTGGTAAATCCTAGAGAGGGATTAATTTTTTT TCTTGAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)