These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 953 fasta sequence [CTTCCTTCCTTTCCTCGATCGATCGATCCGCAACATGCCCGCGGCGGCGGCGGCGGCGGCGCGGACCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCAGGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGCGCGAGC-CGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGGCGATTTCCTCGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCAGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGCCGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAAACGGTGTATAATTAATTTAGGAGTAAGAGCATGTTTCTATTTGATCATTGATCGTAATGAG] [+] EMBL BI796534 [CTTCCTTCCTTTCCTCGATCGATCGATCCGCAACATGCCCGCGGCGGCGGCGGCGGCGGCGCGGACCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCAGGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGCGCGAGC CGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGGCGATTTCCTCGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCAGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGCCGCCGTCATGGCCGTC ] [+] EMBL AK111076 [ GATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGCGCGAGCGCGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGGCGATTTCCTTGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCAGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGCCGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACACGGTGTATAATTAATTTAGGAGTAAGAGCATGTTTCTATTTGATCATTGATCGTAATGAG] [+] EMBL CB966161 [ AATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTTTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAAACGGTGTATAATTAATTTAGGAGTAAGAACATG ] [+] EMBL AU172884 [ GATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAANCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAANAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAAAAA ] consensusID : consensus_8801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [TTATTGCTGCTGCTGTTGCTGTAAAGTTACATGTGGAGGCGAATTGAGGCTCTTTTTATATTTTAGCCAAAATAAACAAATTTTGTTAATACTGAAATTTTGATAATTTCGTAATATTATCGGGTTTTAACAGGATTTCTTATGTATTTATCAAAGTTTAGTAAAAAAACTAAACAGATACACAGATTTAGCAACTTTATTAAATAATGTTATGGTTTAAAATGACATCAATTTGAATACCAAGTGTTCTTTAATACTCCTACTTACTACTAGTATACTGCCTTTACTACTAGTATACTGCCTTTGGATACGAGGTGAACTGGTGACAATGTTCTGTCATGTCTTTAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACCACGGTGTATAATTAATTTAGGAGTAAGAACATGTTTCTATTTGATCAAAAAAAAAAAAA] [-] EMBL CA761651 [TTATTGCTGCTGCTGTTGCTGTAAAGTTACATGTGGAGGCGAATTGAGGCTCTTTTTATATTTTAGCCAAAATAAACAAATTTTGTTAATACTGAAATTTTGATAATTTCGTAATATTATCGGGTTTTAACAGGATTTCTTATGTATTTATCAAAGTTTAGTAAAAAAACTAAACAGATACACAGATTTAGCAACTTTATTAAATAATGTTATGGTTTAAAATGACATCAATTTGAATACCAAGTGTTCTTTAATACTCCTACTTACTACTAGTATACTGCCTTTACTACTAGTATACTGCCTTTGGATACGAGGTGAACTGGTGACAATGTTCTGTCATGTCTTTAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACCACGGTGTATAATTAATTTAGGAGTAAGAACATGTTTCTATTTGATCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8801#0 CTTCCTTCCTTTCCTCGATCGATCGATCCGCAACATGCCCGCGGCGGCGGCGGCGGCGGC 60 consensus_8801#1 ------------------------------------------------------------ consensus_8801#0 GCGGACCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCA 120 consensus_8801#1 ------------------------------------------------------------ consensus_8801#0 GGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCG 180 consensus_8801#1 ------------------------------------------------------------ consensus_8801#0 GCAGCGCGAGCCGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGC 240 consensus_8801#1 ------------------------------------------------------------ consensus_8801#0 CTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGG 300 consensus_8801#1 ---------------------------------TTATTGCTGCTGCTGTTGCTGTAAAGT 27 * * * * * ** * * consensus_8801#0 CAACGACGGCGACGACGACGACGACGAAGCAGATCT-GTCGGGGATGGGCGATTTCCTCG 359 consensus_8801#1 TACATGTGGAGGCGAATTGAGGCTCTTTTTATATTTTAGCCAAAATAAACAAATT--TTG 85 * ** * *** * * ** * * ** * * ** * * consensus_8801#0 GCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGC 419 consensus_8801#1 TTAATACTGAAATTTTGATAA-TTTCGTAATATTATCGG---GTTTTAACAGGATTTCTT 141 * * * **** * * * *** * ** * * * consensus_8801#0 AGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGC 479 consensus_8801#1 ATGTATTTAT---CAAAGTTTAGTAAAAAAACTAAACAGA--TACACAGATTTA-GCAAC 195 * * ** * ** * ** * * * * * * * * * * * ** * consensus_8801#0 CGCCGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGG 539 consensus_8801#1 TTTATTAAATAATGTTATGGTTTAAAATGAC-ATCAATTTG-AATACCAAGTGTTCTTTA 253 * * * * * * * **** ** * * * consensus_8801#0 CGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCG-ATGGACATGGACTCC 598 consensus_8801#1 ATACTCCTACTTACTACT--AGTATACTGCCTTTACTACTAGTATACTGCCTTTGGATAC 311 *** * * * * * * * * ** * * * * * * * * consensus_8801#0 GGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAG 658 consensus_8801#1 GAGGTGAAC----TGGTGACAATGTTCTG-TCATGTCTTTAGGCGCCATGGACGTCGCAG 366 * *** * ** ** ** * * * *** * ******************** consensus_8801#0 GACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCG 718 consensus_8801#1 GACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCG 426 ************************************************************ consensus_8801#0 GCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTT 778 consensus_8801#1 GCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTT 486 ************************************************************ consensus_8801#0 TGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTT 838 consensus_8801#1 TGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTT 546 ************************************************************ consensus_8801#0 TTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAA-ACGGT 897 consensus_8801#1 TTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACCACGGT 606 ***************************************************** ***** consensus_8801#0 GTATAATTAATTTAGGAGTAAGAGCATGTTTCTATTTGATCATTGATCGTAATGAG 953 consensus_8801#1 GTATAATTAATTTAGGAGTAAGAACATGTTTCTATTTGATCAAAAAAAAAAAAA-- 660 *********************** ****************** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||