|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 953 fasta sequence
[CTTCCTTCCTTTCCTCGATCGATCGATCCGCAACATGCCCGCGGCGGCGGCGGCGGCGGCGCGGACCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCAGGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGCGCGAGC-CGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGGCGATTTCCTCGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCAGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGCCGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAAACGGTGTATAATTAATTTAGGAGTAAGAGCATGTTTCTATTTGATCATTGATCGTAATGAG]
[+] EMBL BI796534 [CTTCCTTCCTTTCCTCGATCGATCGATCCGCAACATGCCCGCGGCGGCGGCGGCGGCGGCGCGGACCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCAGGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGCGCGAGC CGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGGCGATTTCCTCGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCAGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGCCGCCGTCATGGCCGTC ]
[+] EMBL AK111076 [ GATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGCGCGAGCGCGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGGCGATTTCCTTGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCAGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGCCGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACACGGTGTATAATTAATTTAGGAGTAAGAGCATGTTTCTATTTGATCATTGATCGTAATGAG]
[+] EMBL CB966161 [ AATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTTTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAAACGGTGTATAATTAATTTAGGAGTAAGAACATG ]
[+] EMBL AU172884 [ GATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAANCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAANAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAAAAA ]
consensusID : consensus_8801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[TTATTGCTGCTGCTGTTGCTGTAAAGTTACATGTGGAGGCGAATTGAGGCTCTTTTTATATTTTAGCCAAAATAAACAAATTTTGTTAATACTGAAATTTTGATAATTTCGTAATATTATCGGGTTTTAACAGGATTTCTTATGTATTTATCAAAGTTTAGTAAAAAAACTAAACAGATACACAGATTTAGCAACTTTATTAAATAATGTTATGGTTTAAAATGACATCAATTTGAATACCAAGTGTTCTTTAATACTCCTACTTACTACTAGTATACTGCCTTTACTACTAGTATACTGCCTTTGGATACGAGGTGAACTGGTGACAATGTTCTGTCATGTCTTTAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACCACGGTGTATAATTAATTTAGGAGTAAGAACATGTTTCTATTTGATCAAAAAAAAAAAAA]
[-] EMBL CA761651 [TTATTGCTGCTGCTGTTGCTGTAAAGTTACATGTGGAGGCGAATTGAGGCTCTTTTTATATTTTAGCCAAAATAAACAAATTTTGTTAATACTGAAATTTTGATAATTTCGTAATATTATCGGGTTTTAACAGGATTTCTTATGTATTTATCAAAGTTTAGTAAAAAAACTAAACAGATACACAGATTTAGCAACTTTATTAAATAATGTTATGGTTTAAAATGACATCAATTTGAATACCAAGTGTTCTTTAATACTCCTACTTACTACTAGTATACTGCCTTTACTACTAGTATACTGCCTTTGGATACGAGGTGAACTGGTGACAATGTTCTGTCATGTCTTTAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACCACGGTGTATAATTAATTTAGGAGTAAGAACATGTTTCTATTTGATCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8801#0 CTTCCTTCCTTTCCTCGATCGATCGATCCGCAACATGCCCGCGGCGGCGGCGGCGGCGGC 60
consensus_8801#1 ------------------------------------------------------------
consensus_8801#0 GCGGACCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCA 120
consensus_8801#1 ------------------------------------------------------------
consensus_8801#0 GGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCG 180
consensus_8801#1 ------------------------------------------------------------
consensus_8801#0 GCAGCGCGAGCCGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGC 240
consensus_8801#1 ------------------------------------------------------------
consensus_8801#0 CTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGG 300
consensus_8801#1 ---------------------------------TTATTGCTGCTGCTGTTGCTGTAAAGT 27
* * * * * ** * *
consensus_8801#0 CAACGACGGCGACGACGACGACGACGAAGCAGATCT-GTCGGGGATGGGCGATTTCCTCG 359
consensus_8801#1 TACATGTGGAGGCGAATTGAGGCTCTTTTTATATTTTAGCCAAAATAAACAAATT--TTG 85
* ** * *** * * ** * * ** * * ** * *
consensus_8801#0 GCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGC 419
consensus_8801#1 TTAATACTGAAATTTTGATAA-TTTCGTAATATTATCGG---GTTTTAACAGGATTTCTT 141
* * * **** * * * *** * ** * * *
consensus_8801#0 AGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGC 479
consensus_8801#1 ATGTATTTAT---CAAAGTTTAGTAAAAAAACTAAACAGA--TACACAGATTTA-GCAAC 195
* * ** * ** * ** * * * * * * * * * * * ** *
consensus_8801#0 CGCCGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGG 539
consensus_8801#1 TTTATTAAATAATGTTATGGTTTAAAATGAC-ATCAATTTG-AATACCAAGTGTTCTTTA 253
* * * * * * * **** ** * * *
consensus_8801#0 CGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCG-ATGGACATGGACTCC 598
consensus_8801#1 ATACTCCTACTTACTACT--AGTATACTGCCTTTACTACTAGTATACTGCCTTTGGATAC 311
*** * * * * * * * * ** * * * * * * * *
consensus_8801#0 GGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAG 658
consensus_8801#1 GAGGTGAAC----TGGTGACAATGTTCTG-TCATGTCTTTAGGCGCCATGGACGTCGCAG 366
* *** * ** ** ** * * * *** * ********************
consensus_8801#0 GACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCG 718
consensus_8801#1 GACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCG 426
************************************************************
consensus_8801#0 GCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTT 778
consensus_8801#1 GCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTT 486
************************************************************
consensus_8801#0 TGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTT 838
consensus_8801#1 TGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTT 546
************************************************************
consensus_8801#0 TTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAA-ACGGT 897
consensus_8801#1 TTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACCACGGT 606
***************************************************** *****
consensus_8801#0 GTATAATTAATTTAGGAGTAAGAGCATGTTTCTATTTGATCATTGATCGTAATGAG 953
consensus_8801#1 GTATAATTAATTTAGGAGTAAGAACATGTTTCTATTTGATCAAAAAAAAAAAAA-- 660
*********************** ****************** * **
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||