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Oryza sativa
cluster # 8812 cluster # 8812       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8812#0 length = 1698 sequences # 2  
consensus_8812#1 length = 1561 sequences # 2  
consensus_8812#2 length = 787 sequences # 1  
consensus_8812#3 length = 302 sequences # 1  

consensusID : consensus_8812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1698
fasta sequence
                              [TCCACGGCCGCCGCCGCCGCCGCCGCCGATCTCTGCTCCGGTGAGCGATGCCGAGGCTTCTCCTTCGCCGTCTCTGCGTACGCCACCGCCGCCGCCCAAAACCCCAAGCCCTCGCCGCCGCCGTCTCCAACGGGACCACCTCCGCCATTGCGGAGGAGCTCACCGACGACCTCCTCGTCGAGATCCTCTCGCGCGTGCCCTACAAGTCGCTCTGCCGCCTCAAGTGCGTCTCCATGCGGTGGCGCCGCGTCATCTCCCACCCCGACCACCGCCGCCAGCTCCCGCGGCATCACCTCCAGCCCCTCGCCGGCTTCCTCTACGCCGACTACCGCGTACTAAACCGTTTCCAGATCGTCCCGGCGCTGGATCCCCCTCCCCTCATCGATCCCTCGTTTTCCTTCCTGCCCAAGTGTGATGATCTCCAGCTGGTGGACAGCTGCAATGGCCTCCTCCTCTGCCGCTGCTGGAATCAGCTCAACGAACACAGGACATTCAACTACGTGGTGTGCAGTCCTACCGCGGAGAAATTTGTCGTCTTCCCGGACTCCACCTGCTCCAAGAAGGTCCGGCCGTTTTTGGGGTTTGATCCGGCTGTCTCGTCTCACTTCCATGTGTTCGAGGTTGTGGAGGATTGGGATTATTATGATTGTGATGACGATGATCTGGAATGTGATGGCGTCGAAGATGTTGTCGGATTGAGGATCTACTCGTCCGAAACTGGAGTGTGGAGTGATGAGATTGATAATGGATGGAGCAACAGAATCAGGATTCGGCGTGATCAAAAGGGTGGTTCCAAGAGTGTTTTCTTCAATGGAATGCTGCATTTGGTCGCCATACAGCCTGTGGTGGCTGTGGTGGATGTGGAGGGGAAGAATTGGAGAACCATCCCTCTGGCACACAAGGATGGTTCTCCTTTGTGTGGTGCTCATCCTCCTTGTGCTTCTGGTCCAGAGGGATTCATTGCTCTGTCCCGGGACCTGCTGCACTTTGCAAGTACTGACAGCTATGGTGACTGGGAAATATCAGTGTGGGTTCTTGATGATTACTACGGCGGACAATGGACCTTGCAACACACGGTCAGCACTATGCGTCCATTTGAGCGGACGATGAGGAGGAGGATGAACCCTGATGACTGCACTCTTGTCTGGATCGAAGGACGTAAGATGTTTTTCATGTTTTATGACTATGTTCATTGTATACTCACGTCATATGAAATGGACAGTGGGGAAGTACGATGTCTAAGTCGTCCTCGGAGTTATTGCGAGCCACCATATCTTCCATATATTCCCTTGTTCTTGGAATCATTAGCAGATGGGCCCTAATAATCTACCGTACTGGATGGCAGCTCTACCTGTGTCAATCTTTTCCGATGATATGGGAACTAGATCACCAATTGCTACGAGGATTGAGCCACTTGGACTGCCACAGCATTGTCTTATCCATCAATAGCATGATATATATGCTTTTCTTTGTTTCTGAGATTGACACATTTCTAATGCTTTGTGAAACAGTACTATGTTCTTAAGTTGGATGGAGTATCAATACCAAAGTTCGGTGTGGTAAAAAAGGTTCTTGCTTCATGTTACTTTTGGTTGTGCTTGATTTCACTCCTGTAACCTGACTTTATGGTGCTAGTTATATGTGTGTACTCAGTGACTGCCATTTTCGGTCTAACTTTATGCCAGTATAGCTGTATGT]

[+] EMBL AK064399             [TCCACGGCCGCCGCCGCCGCCGCCGCCGATCTCTGCTCCGGTGAGCGATGCCGAGGCTTCTCCTTCGCCGTCTCTGCGTACGCCACCGCCGCCGCCCAAAACCCCAAGCCCTCGCCGCCGCCGTCTCCAACGGGACCACCTCCGCCATTGCGGAGGAGCTCACCGACGACCTCCTCGTCGAGATCCTCTCGCGCGTGCCCTACAAGTCGCTCTGCCGCCTCAAGTGCGTCTCCATGCGGTGGCGCCGCGTCATCTCCCACCCCGACCACCGCCGCCAGCTCCCGCGGCATCACCTCCAGCCCCTCGCCGGCTTCCTCTACGCCGACTACCGCGTACTAAACCGTTTCCAGATCGTCCCGGCGCTGGATCCCCCTCCCCTCATCGATCCCTCGTTTTCCTTCCTGCCCAAGTGTGATGATCTCCAGCTGGTGGACAGCTGCAATGGCCTCCTCCTCTGCCGCTGCTGGAATCAGCTCAACGAACACAGGACATTCAACTACGTGGTGTGCAGTCCTACCGCGGAGAAATTTGTCGTCTTCCCGGACTCCACCTGCTCCAAGAAGGTCCGGCCGTTTTTGGGGTTTGATCCGGCTGTCTCGTCTCACTTCCATGTGTTCGAGGTTGTGGAGGATTGGGATTATTATGATTGTGATGACGATGATCTGGAATGTGATGGCGTCGAAGATGTTGTCGGATTGAGGATCTACTCGTCCGAAACTGGAGTGTGGAGTGATGAGATTGATAATGGATGGAGCAACAGAATCAGGATTCGGCGTGATCAAAAGGGTGGTTCCAAGAGTGTTTTCTTCAATGGAATGCTGCATTTGGTCGCCATACAGCCTGTGGTGGCTGTGGTGGATGTGGAGGGGAAGAATTGGAGAACCATCCCTCTGGCACACAAGGATGGTTCTCCTTTGTGTGGTGCTCATCCTCCTTGTGCTTCTGGTCCAGAGGGATTCATTGCTCTGTCCCGGGACCTGCTGCACTTTGCAAGTACTGACAGCTATGGTGACTGGGAAATATCAGTGTGGGTTCTTGATGATTACTACGGCGGACAATGGACCTTGCAACACACGGTCAGCACTATGCGTCCATTTGAGCGGACGATGAGGAGGAGGATGAACCCTGATGACTGCACTCTTGTCTGGATCGAAGGACGTAAGATGTTTTTCATGTTTTATGACTATGTTCATTGTATACTCACGTCATATGAAATGGACAGTGGGGAAGTACGATGTCTAAGTCGTCCTCGGAGTTATTGCGAGCCACCATATCTTCCATATATTCCCTTGTTCTTGGAATCATTAGCAGATGGGCCCTAATAATCTACCGTACTGGATGGCAGCTCTACCTGTGTCAATCTTTTCCGATGATATGGGAACTAGATCACCAATTGCTACGAGGATTGAGCCACTTGGACTGCCACAGCATTGTCTTATCCATCAATAGCATGATATATATGCTTTTCTTTGTTTCTGAGATTGACACATTTCTAATGCTTTGTGAAACAGTACTATGTTCTTAAGTTGGATGGAGTATCAATACCAAAGTTCGGTGTGGTAAAAAAGGTTCTTGCTTCATGTTACTTTTGGTTGTGCTTGATTTCACTCCTGTAACCTGACTTTATGGTGCTAGTTATATGTGTGTACTCAGTGACTGCCATTTTCGGTCTAACTTTATGCCAGTATAGCTGTATGT]
[-] EMBL CA759148             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                acCCATCCCTCTGGCACACAAGGATGGTTCTCCTTTGTGTGGTGCTCATCCTCCTTGTGCTTCTGGTCCAGAGGGATTCATTGCTCTGTCCCGGGGCCTGCTGCACTTTGCAAGTACTGACAGCTATGGTGACTGGGAAATATCAGTGTGGGTTCTTGATGATTACTACGGCGGACAATGGACCTTGCAACACACGGTCAGCACTATGCGTCCATTTGAGCGGACGATGAGGAGGAGGATGAACCCTGATGACTGCACTCTTGTCTGAATCGAAGGACGTAAGATGTTTTTCATGTTTTATGACTATGTTCATTGTATACTCACGTCATATGAAATGGACAGTGGGGAAGTACGATGTCTAAGTCGTCCTCGGAGTTATTGCGAGCCACCATATCTTCCATATATTCCCTTGTTCTTGGAATCATTAGCAGATGGGCCCTAATAATCTACCGTACTGGATGGCAGCTCTACCTGTGTCAATCTTTTCCGATGATATGGGAACTAGATCACCAATTGCTACGAGGATTGAGCCACTTGGACTGCCACAGCATTGTCTTATCCATCAATAGCATGATATATATGCTTTTCTTTGTTTCTGAGATTGACACATTTCTAATGCTTTGTGAAACAGTACTATGTTCTTAAGTTGGATGGAGTATCAATATCAAAGTTCGGTGTGGTAAAAAAaaaaaa                                                                                                                             ]


>consensus_8812#0 TCCACGGCCGCCGCCGCCGCCGCCGCCGATCTCTGCTCCGGTGAGCGATGCCGAGGCTTC TCCTTCGCCGTCTCTGCGTACGCCACCGCCGCCGCCCAAAACCCCAAGCCCTCGCCGCCG CCGTCTCCAACGGGACCACCTCCGCCATTGCGGAGGAGCTCACCGACGACCTCCTCGTCG AGATCCTCTCGCGCGTGCCCTACAAGTCGCTCTGCCGCCTCAAGTGCGTCTCCATGCGGT GGCGCCGCGTCATCTCCCACCCCGACCACCGCCGCCAGCTCCCGCGGCATCACCTCCAGC CCCTCGCCGGCTTCCTCTACGCCGACTACCGCGTACTAAACCGTTTCCAGATCGTCCCGG CGCTGGATCCCCCTCCCCTCATCGATCCCTCGTTTTCCTTCCTGCCCAAGTGTGATGATC TCCAGCTGGTGGACAGCTGCAATGGCCTCCTCCTCTGCCGCTGCTGGAATCAGCTCAACG AACACAGGACATTCAACTACGTGGTGTGCAGTCCTACCGCGGAGAAATTTGTCGTCTTCC CGGACTCCACCTGCTCCAAGAAGGTCCGGCCGTTTTTGGGGTTTGATCCGGCTGTCTCGT CTCACTTCCATGTGTTCGAGGTTGTGGAGGATTGGGATTATTATGATTGTGATGACGATG ATCTGGAATGTGATGGCGTCGAAGATGTTGTCGGATTGAGGATCTACTCGTCCGAAACTG GAGTGTGGAGTGATGAGATTGATAATGGATGGAGCAACAGAATCAGGATTCGGCGTGATC AAAAGGGTGGTTCCAAGAGTGTTTTCTTCAATGGAATGCTGCATTTGGTCGCCATACAGC CTGTGGTGGCTGTGGTGGATGTGGAGGGGAAGAATTGGAGAACCATCCCTCTGGCACACA AGGATGGTTCTCCTTTGTGTGGTGCTCATCCTCCTTGTGCTTCTGGTCCAGAGGGATTCA TTGCTCTGTCCCGGGACCTGCTGCACTTTGCAAGTACTGACAGCTATGGTGACTGGGAAA TATCAGTGTGGGTTCTTGATGATTACTACGGCGGACAATGGACCTTGCAACACACGGTCA GCACTATGCGTCCATTTGAGCGGACGATGAGGAGGAGGATGAACCCTGATGACTGCACTC TTGTCTGGATCGAAGGACGTAAGATGTTTTTCATGTTTTATGACTATGTTCATTGTATAC TCACGTCATATGAAATGGACAGTGGGGAAGTACGATGTCTAAGTCGTCCTCGGAGTTATT GCGAGCCACCATATCTTCCATATATTCCCTTGTTCTTGGAATCATTAGCAGATGGGCCCT AATAATCTACCGTACTGGATGGCAGCTCTACCTGTGTCAATCTTTTCCGATGATATGGGA ACTAGATCACCAATTGCTACGAGGATTGAGCCACTTGGACTGCCACAGCATTGTCTTATC CATCAATAGCATGATATATATGCTTTTCTTTGTTTCTGAGATTGACACATTTCTAATGCT TTGTGAAACAGTACTATGTTCTTAAGTTGGATGGAGTATCAATACCAAAGTTCGGTGTGG TAAAAAAGGTTCTTGCTTCATGTTACTTTTGGTTGTGCTTGATTTCACTCCTGTAACCTG ACTTTATGGTGCTAGTTATATGTGTGTACTCAGTGACTGCCATTTTCGGTCTAACTTTAT GCCAGTATAGCTGTATGT



consensusID : consensus_8812#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1561
fasta sequence
                              [ACCCTCGCCTCGCCTCGCCGCCGTCGACTCGACTCGAACCGGAGCGCCGGATCCAGCCCGCCGCCGTCCCTAGCTCCGCCGCCGCCGCCGCACTGTGGATTGGTTGAGGCGGATTCCAGGGATGGGCGCAGGGGGTGGATCCCGGCGCCGGCGGAGAAGCTCACCGACGACCTCCTCGTAGAGATCCTCTCGCGCGTGCCCTACAAGTCGCTCTGCCGATCCAAGTGCGTCTCCACGCGGTGGCGCCGCGTCATCTCCCACCCCGACCAACGGCGCCGACTGCCGCGGTATCACCTCGGCAACGACATTGTCGGCTACTTCTACAAGTCCAACACCTTCACCAACGTCACAGGGGAAGGCCGCCCTTTTGTTGACCCCTCGCTCCCCTTCCTGCCCAAGTGCGAGTTTCTCAACGTCGTCGATAGCTGCAATGGCCTCCTCCTGTGTCGCTGCTGGAGGCTCGCAGATCCACGGAGATTGATTACCTAGTGGTTAATCCTGCCACTGAACATTGGGTCATCCTGCCTGATTCCGGCTGGTCTGACAAGGTGCAGACTGCTCGCTTGGGGTTCGATCCAACGGTCTCCTCCTCGCACTTTCATGTGTTTGAGTTTGTGGAGGACGGCGCTGCGGATGTCGATGGGAATGTTGATCGTGACGACTATGATGGGCATGTCAAAGGGGTGGAAATCTACTCATCTGTAACTGGAGAATGGAGTCACAAGGACAATGGTTGGAACTGGGAAATCAGGTTACGCGATGAATCGAATAGTGTGTTTTTTGATGGCGTGCTGCATTTGATCACTATTGAGGATGTGGTGGCAGCGGTCGGTGTGGAGGGGAATACTTGGAGGATCATTCCTATGCCTCAAAGTCTAGTTGAGCCTTTCAATGGTATTGGTGAGGGATTCATTGTCCTGTCTCAGGGTTCTCTGTATTTTGTAAACAGCGATCACGATAAACCATATAAAGTATCAGTATGGGTTCTTGAGGACTACAGCAGTGAACAGTGGATCTGGAAGCACACTGTCAGCCATTTACATCTATTTCAAACCAAGAGACTCCTTTTTGGACATGACTACAAAGTTGTCTCAATTCATCCGGAACGGAATAACATTTTCTTGGTTTGGCCGCATAGCAAAATGCTCATGTCCTATGAATTGGATAGCAGAGAAGTGCATTTTATATGTGGCATCGGAGGTTGTGAGTGGGTGATGTACTATCTTCCTTACGTTCCCTTGTACTTAGAATCACTGGCAGATGGGCATTGATCATCGTACTTGCATAGGCGAACGCTTGGTTTGTTAACCTTAAATTATGACATTGGAGTTAGGACACCGATAAGATCAGCAGGAACTTGGCAGATCTTTCTGATGTTGTGCTACATTGTTGTAGGTGGTTGAGTGCGTTCTGCAACCTCACTTTCTGGGGCCAACTTTTCAGTAACTTGGAACTTAATTCGGATTTTGTAATAGTGATGTTGTATTTGATTGTTTGCGATGTTGAAAACCCTCTAGCACTTATTTATGCCAATATTTGTTGAGATTTCAAAAAAAAAAAA]

[+] EMBL AK064652             [ACCCTCGCCTCGCCTCGCCGCCGTCGACTCGACTCGAACCGGAGCGCCGGATCCAGCCCGCCGCCGTCCCTAGCTCCGCCGCCGCCGCCGCACTGTGGATTGGTTGAGGCGGATTCCAGGGATGGGCGCAGGGGGTGGATCCCGGCGCCGGCGGAGAAGCTCACCGACGACCTCCTCGTAGAGATCCTCTCGCGCGTGCCCTACAAGTCGCTCTGCCGATCCAAGTGCGTCTCCACGCGGTGGCGCCGCGTCATCTCCCACCCCGACCAACGGCGCCGACTGCCGCGGTATCACCTCGGCAACGACATTGTCGGCTACTTCTACAAGTCCAACACCTTCACCAACGTCACAGGGGAAGGCCGCCCTTTTGTTGACCCCTCGCTCCCCTTCCTGCCCAAGTGCGAGTTTCTCAACGTCGTCGATAGCTGCAATGGCCTCCTCCTGTGTCGCTGCTGGAGGCTCGCAGATCCACGGAGATTGATTACCTAGTGGTTAATCCTGCCACTGAACATTGGGTCATCCTGCCTGATTCCGGCTGGTCTGACAAGGTGCAGACTGCTCGCTTGGGGTTCGATCCAACGGTCTCCTCCTCGCACTTTCATGTGTTTGAGTTTGTGGAGGACGGCGCTGCGGATGTCGATGGGAATGTTGATCGTGACGACTATGATGGGCATGTCAAAGGGGTGGAAATCTACTCATCTGTAACTGGAGAATGGAGTCACAAGGACAATGGTTGGAACTGGGAAATCAGGTTACGCGATGAATCGAATAGTGTGTTTTTTGATGGCGTGCTGCATTTGATCACTATTGAGGATGTGGTGGCAGCGGTCGGTGTGGAGGGGAATACTTGGAGGATCATTCCTATGCCTCAAAGTCTAGTTGAGCCTTTCAATGGTATTGGTGAGGGATTCATTGTCCTGTCTCAGGGTTCTCTGTATTTTGTAAACAGCGATCACGATAAACCATATAAAGTATCAGTATGGGTTCTTGAGGACTACAGCAGTGAACAGTGGATCTGGAAGCACACTGTCAGCCATTTACATCTATTTCAAACCAAGAGACTCCTTTTTGGACATGACTACAAAGTTGTCTCAATTCATCCGGAACGGAATAACATTTTCTTGGTTTGGCCGCATAGCAAAATGCTCATGTCCTATGAATTGGATAGCAGAGAAGTGCATTTTATATGTGGCATCGGAGGTTGTGAGTGGGTGATGTACTATCTTCCTTACGTTCCCTTGTACTTAGAATCACTGGCAGATGGGCATTGATCATCGTACTTGCATAGGCGAACGCTTGGTTTGTTAACCTTAAATTATGACATTGGAGTTAGGACACCGATAAGATCAGCAGGAACTTGGCAGATCTTTCTGATGTTGTGCTACATTGTTGTAGGTGGTTGAGTGCGTTCTGCAACCTCACTTTCTGGGGCCAACTTTTCAGTAACTTGGAACTTAATTCGGATTTTGTAATAGTGATGTTGTATTTGATTGTT                                                                  ]
[-] EMBL CA759147             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGAGGGATTCATTGGCCTGTCTCAGGGTTCTCTGTATTTTGTAAACAGCGATCACGATAAGCCATATAAAGTATCAGTATGGGTTCTTGAGGACTACAGCAGTGAACAGTGGATCTGGAAGCACACTGTCAGCCATTTACATCTATTTCAAACCAAGAGACTCTTTTTTGGACATGACTACAAAGTTGTCTCAATCCATCCGGAACGGAATAACATTTTCTTGGTTTGACCGCATAGCAAAATGCTCATGTCCTATGAATTGGATAGCAGAGAAGTGCATTTTATATGTGGCATCGGAGGTTGTGAGTGGGTGATGTACTATCTTCCTTACGTTCCCTTGTACTTAGAATCACTGGCAGATGGGCATTGATCATCGTACTTGCATAGGCGAACGCTTGGTTTGTTAACCTTAAATTATGACATTGGAGTTAGGACACCGATAAGATCAGCAGGAACTTGGCAGATCTTTCTGATGTTGTGCTACATTGTTGTAGGTGGTTGAGTGCGTTCTGCAACCTCACTTTCTGGGGCCAACTTTTCAGTAACTTGGAACTTAATTCGGATTTTGTAATAGTGATGTTGTATTTGATTGTTTGCGATGTTGAAAACCCTCTAGCACTTATTTATGCCAATATTTGTTGAGATTTCAAAAAAAAAAAA]


>consensus_8812#1 ACCCTCGCCTCGCCTCGCCGCCGTCGACTCGACTCGAACCGGAGCGCCGGATCCAGCCCG CCGCCGTCCCTAGCTCCGCCGCCGCCGCCGCACTGTGGATTGGTTGAGGCGGATTCCAGG GATGGGCGCAGGGGGTGGATCCCGGCGCCGGCGGAGAAGCTCACCGACGACCTCCTCGTA GAGATCCTCTCGCGCGTGCCCTACAAGTCGCTCTGCCGATCCAAGTGCGTCTCCACGCGG TGGCGCCGCGTCATCTCCCACCCCGACCAACGGCGCCGACTGCCGCGGTATCACCTCGGC AACGACATTGTCGGCTACTTCTACAAGTCCAACACCTTCACCAACGTCACAGGGGAAGGC CGCCCTTTTGTTGACCCCTCGCTCCCCTTCCTGCCCAAGTGCGAGTTTCTCAACGTCGTC GATAGCTGCAATGGCCTCCTCCTGTGTCGCTGCTGGAGGCTCGCAGATCCACGGAGATTG ATTACCTAGTGGTTAATCCTGCCACTGAACATTGGGTCATCCTGCCTGATTCCGGCTGGT CTGACAAGGTGCAGACTGCTCGCTTGGGGTTCGATCCAACGGTCTCCTCCTCGCACTTTC ATGTGTTTGAGTTTGTGGAGGACGGCGCTGCGGATGTCGATGGGAATGTTGATCGTGACG ACTATGATGGGCATGTCAAAGGGGTGGAAATCTACTCATCTGTAACTGGAGAATGGAGTC ACAAGGACAATGGTTGGAACTGGGAAATCAGGTTACGCGATGAATCGAATAGTGTGTTTT TTGATGGCGTGCTGCATTTGATCACTATTGAGGATGTGGTGGCAGCGGTCGGTGTGGAGG GGAATACTTGGAGGATCATTCCTATGCCTCAAAGTCTAGTTGAGCCTTTCAATGGTATTG GTGAGGGATTCATTGTCCTGTCTCAGGGTTCTCTGTATTTTGTAAACAGCGATCACGATA AACCATATAAAGTATCAGTATGGGTTCTTGAGGACTACAGCAGTGAACAGTGGATCTGGA AGCACACTGTCAGCCATTTACATCTATTTCAAACCAAGAGACTCCTTTTTGGACATGACT ACAAAGTTGTCTCAATTCATCCGGAACGGAATAACATTTTCTTGGTTTGGCCGCATAGCA AAATGCTCATGTCCTATGAATTGGATAGCAGAGAAGTGCATTTTATATGTGGCATCGGAG GTTGTGAGTGGGTGATGTACTATCTTCCTTACGTTCCCTTGTACTTAGAATCACTGGCAG ATGGGCATTGATCATCGTACTTGCATAGGCGAACGCTTGGTTTGTTAACCTTAAATTATG ACATTGGAGTTAGGACACCGATAAGATCAGCAGGAACTTGGCAGATCTTTCTGATGTTGT GCTACATTGTTGTAGGTGGTTGAGTGCGTTCTGCAACCTCACTTTCTGGGGCCAACTTTT CAGTAACTTGGAACTTAATTCGGATTTTGTAATAGTGATGTTGTATTTGATTGTTTGCGA TGTTGAAAACCCTCTAGCACTTATTTATGCCAATATTTGTTGAGATTTCAAAAAAAAAAA A



consensusID : consensus_8812#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence
                              [GACGAGACAAGGGGCAAAAGGGTGGTTCCAAGAGTGTTTTCTTCAATGGAATGCTGCATTTGGTCGCCATACAGCCTGTGGTGGCTGTGGTGGATGTGGAGGGGAAGAATTGGAGAACCATCCCTCTGGCACACAAGGATGGTTCTCCTTTGTGTGGTGCTCATCCTCCTTGTGCTTCTGGTCCAGAGGGATTCATTGCTCTGTCCCGGGGCCTGCTGCACTTTGCAAGTACTGACAGCTATGGTGACTGGGAAATATCAGTGTGGGTTCTTGATGATTACTACGGCGGACAATGGACCTTGCAACACACGGTCAGCACTATGCGTCCATTTGAGCGGACGATGAGGAGGAGGATGAACCCTGATGACTGCACTCTTGTCTGAATCGAAGGACGTAAGATGTTTTTCATGTTTTATGACTATGTTCATTGTATACTCACGTCATATGAAATGGACAGTGGGGAAGTACGATGTCTGAGTCGTCCTCGGAGTTATTGCGAGCCACCATATCTTCCATATATTCCCTTGTTCTTGGAATCATTAGCAGATGGGCCCCAATAATCTACCGTACTGGATGGCAGCTCTACCTGTGTCAATCTTTTCCGATGATATGGGAACTAGATCACCAATTGCTACGAGGATTGAGCCACTTGGACTGCCACAGCATTGTCTTATCCATCAATAGCATGATATATATGCTTTTCTTTGGTTCTGAGATTGACACATTTCTAATGCTTTGTGAAACAGTACTATGTTCTTAAGTTGGATGGGAGTATCAATATCAAAGT]

[+] EMBL CB096820             [GACGAGACAAGGGGCAAAAGGGTGGTTCCAAGAGTGTTTTCTTCAATGGAATGCTGCATTTGGTCGCCATACAGCCTGTGGTGGCTGTGGTGGATGTGGAGGGGAAGAATTGGAGAACCATCCCTCTGGCACACAAGGATGGTTCTCCTTTGTGTGGTGCTCATCCTCCTTGTGCTTCTGGTCCAGAGGGATTCATTGCTCTGTCCCGGGGCCTGCTGCACTTTGCAAGTACTGACAGCTATGGTGACTGGGAAATATCAGTGTGGGTTCTTGATGATTACTACGGCGGACAATGGACCTTGCAACACACGGTCAGCACTATGCGTCCATTTGAGCGGACGATGAGGAGGAGGATGAACCCTGATGACTGCACTCTTGTCTGAATCGAAGGACGTAAGATGTTTTTCATGTTTTATGACTATGTTCATTGTATACTCACGTCATATGAAATGGACAGTGGGGAAGTACGATGTCTGAGTCGTCCTCGGAGTTATTGCGAGCCACCATATCTTCCATATATTCCCTTGTTCTTGGAATCATTAGCAGATGGGCCCCAATAATCTACCGTACTGGATGGCAGCTCTACCTGTGTCAATCTTTTCCGATGATATGGGAACTAGATCACCAATTGCTACGAGGATTGAGCCACTTGGACTGCCACAGCATTGTCTTATCCATCAATAGCATGATATATATGCTTTTCTTTGGTTCTGAGATTGACACATTTCTAATGCTTTGTGAAACAGTACTATGTTCTTAAGTTGGATGGGAGTATCAATATCAAAGT]


>consensus_8812#2 GACGAGACAAGGGGCAAAAGGGTGGTTCCAAGAGTGTTTTCTTCAATGGAATGCTGCATT TGGTCGCCATACAGCCTGTGGTGGCTGTGGTGGATGTGGAGGGGAAGAATTGGAGAACCA TCCCTCTGGCACACAAGGATGGTTCTCCTTTGTGTGGTGCTCATCCTCCTTGTGCTTCTG GTCCAGAGGGATTCATTGCTCTGTCCCGGGGCCTGCTGCACTTTGCAAGTACTGACAGCT ATGGTGACTGGGAAATATCAGTGTGGGTTCTTGATGATTACTACGGCGGACAATGGACCT TGCAACACACGGTCAGCACTATGCGTCCATTTGAGCGGACGATGAGGAGGAGGATGAACC CTGATGACTGCACTCTTGTCTGAATCGAAGGACGTAAGATGTTTTTCATGTTTTATGACT ATGTTCATTGTATACTCACGTCATATGAAATGGACAGTGGGGAAGTACGATGTCTGAGTC GTCCTCGGAGTTATTGCGAGCCACCATATCTTCCATATATTCCCTTGTTCTTGGAATCAT TAGCAGATGGGCCCCAATAATCTACCGTACTGGATGGCAGCTCTACCTGTGTCAATCTTT TCCGATGATATGGGAACTAGATCACCAATTGCTACGAGGATTGAGCCACTTGGACTGCCA CAGCATTGTCTTATCCATCAATAGCATGATATATATGCTTTTCTTTGGTTCTGAGATTGA CACATTTCTAATGCTTTGTGAAACAGTACTATGTTCTTAAGTTGGATGGGAGTATCAATA TCAAAGT



consensusID : consensus_8812#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence
                              [TTTGCTTCTCTGATCTCTCTCTTGCGCANCATGGCGGAGGAGGAGGATTCTAGGGTGTGGATCCCGCCGGCGNGNAGNAAGCTCACCGACGACCTCCTCGTCGAGGTCCTCTCGCGCGTNCCCTACAAGTCGCTCTGCCGCTCCAAGCGCGTCTGCAGGCGGTGGCGCCGCGTCATCTCCGACCCCGACCACCGCCGNCTCCTGCCGCGGTATCACCTCCACGACGCCGTGTCGGATTCTTCGACCACAGATCCTTCATCAGCTTCTCAGGCAGNNGCGCTTCGTCGGGCCCTCGCTCNCCT]

[+] EMBL C72363               [TTTGCTTCTCTGATCTCTCTCTTGCGCANCATGGCGGAGGAGGAGGATTCTAGGGTGTGGATCCCGCCGGCGNGNAGNAAGCTCACCGACGACCTCCTCGTCGAGGTCCTCTCGCGCGTNCCCTACAAGTCGCTCTGCCGCTCCAAGCGCGTCTGCAGGCGGTGGCGCCGCGTCATCTCCGACCCCGACCACCGCCGNCTCCTGCCGCGGTATCACCTCCACGACGCCGTGTCGGATTCTTCGACCACAGATCCTTCATCAGCTTCTCAGGCAGNNGCGCTTCGTCGGGCCCTCGCTCNCCT]


>consensus_8812#3 TTTGCTTCTCTGATCTCTCTCTTGCGCANCATGGCGGAGGAGGAGGATTCTAGGGTGTGG ATCCCGCCGGCGNGNAGNAAGCTCACCGACGACCTCCTCGTCGAGGTCCTCTCGCGCGTN CCCTACAAGTCGCTCTGCCGCTCCAAGCGCGTCTGCAGGCGGTGGCGCCGCGTCATCTCC GACCCCGACCACCGCCGNCTCCTGCCGCGGTATCACCTCCACGACGCCGTGTCGGATTCT TCGACCACAGATCCTTCATCAGCTTCTCAGGCAGNNGCGCTTCGTCGGGCCCTCGCTCNC CT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      TCCACGGCCGCCGCCGCCGCCGCCGCCGATCTCTGCTCCGGTGAGCGATGCCGAGGCTTC 60
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      TCCTTCGCCGTCTCTGCGTACGCCACCGCCGCCGCCCAAAACCCCAAGCCCTCGCCGCCG 120
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      CCGTCTCCAACGGGACCACCTCCGCCATTGCGGAGGAGCTCACCGACGACCTCCTCGTCG 180
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      AGATCCTCTCGCGCGTGCCCTACAAGTCGCTCTGCCGCCTCAAGTGCGTCTCCATGCGGT 240
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      GGCGCCGCGTCATCTCCCACCCCGACCACCGCCGCCAGCTCCCGCGGCATCACCTCCAGC 300
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      CCCTCGCCGGCTTCCTCTACGCCGACTACCGCGTACTAAACCGTTTCCAGATCGTCCCGG 360
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      CGCTGGATCCCCCTCCCCTCATCGATCCCTCGTTTTCCTTCCTGCCCAAGTGTGATGATC 420
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      TCCAGCTGGTGGACAGCTGCAATGGCCTCCTCCTCTGCCGCTGCTGGAATCAGCTCAACG 480
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      AACACAGGACATTCAACTACGTGGTGTGCAGTCCTACCGCGGAGAAATTTGTCGTCTTCC 540
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      CGGACTCCACCTGCTCCAAGAAGGTCCGGCCGTTTTTGGGGTTTGATCCGGCTGTCTCGT 600
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      CTCACTTCCATGTGTTCGAGGTTGTGGAGGATTGGGATTATTATGATTGTGATGACGATG 660
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ------------------------------------------------------------
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ATCTGGAATGTGATGGCGTCGAAGATGTTGTCGGATTGAGGATCTACTCGTCCGAAACTG 720
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      --------------------------ACCCTCGCCTCGCCTCGCCGCCGTCGACTCGACT 34
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      GAGTGTGGAGTGATGAGATTGATAATGGATGGAGCAACAGAATCAGGATTCGGCGTGAT- 779
consensus_8812#2      ----------------------------------------------GACGAGACAAGGGG 14
                                                                                  

consensus_8812#1      CGAACCGGAGCGCCGGATCCAGCCCGCCGCCGTCCCTAGCTCC-GCCGCCGCCGCCGCAC 93
consensus_8812#3      -----------------------------------TTTGCTTC-TCTGATCTCTCTCTTG 24
consensus_8812#0      CAAAAGGGTGGTTCCAAGAGTGTTTTCTTCAATGGAATGCTGCATTTGGTCGCCATACAG 839
consensus_8812#2      CAAAAGGGTGGTTCCAAGAGTGTTTTCTTCAATGGAATGCTGCATTTGGTCGCCATACAG 74
                                                            *** *    *    *       

consensus_8812#1      TGTGGATTGGTTGAGGCGGATTCCAGGGATGGGCGCAGGGGGTGGATCCCGGCGCCGGCG 153
consensus_8812#3      CGCANCATGGCGGAGGAGGA------GGAT---TCTAGGGTGTGGATCCCGCCGGCGNGN 75
consensus_8812#0      CCTGTGGTGGCTGTGGTGGATGTGGAGGGGAAGAATTGGAGAACCATCCCTCTGGCACAC 899
consensus_8812#2      CCTGTGGTGGCTGTGGTGGATGTGGAGGGGAAGAATTGGAGAACCATCCCTCTGGCACAC 134
                             ***  * ** ***      **         **      *****   * *    

consensus_8812#1      GAGAA-GCTCACCGACGACCTCCTCGTAGAGATCCTCTCGCGCGTGCCCTACAAG----- 207
consensus_8812#3      AGNAA-GCTCACCGACGACCTCCTCGTCGAGGTCCTCTCGCGCGTNCCCTACAAG----- 129
consensus_8812#0      AAGGATGGTTCTCCTTTGTGTGGTGCTCATCCTCCTTGTGCTTCTGGTCCAGAGGGATTC 959
consensus_8812#2      AAGGATGGTTCTCCTTTGTGTGGTGCTCATCCTCCTTGTGCTTCTGGTCCAGAGGGATTC 194
                          * * *   *       *  *  *     ****   **   *   * * * *     

consensus_8812#1      -TCGCTCTGCC---GATCCAAGTGCG-TCTCCACGCGGTGGCGCCGCGTCATCTCCCACC 262
consensus_8812#3      -TCGCTCTGCC---GCTCCAAGCGCG-TCTGCAGGCGGTGGCGCCGCGTCATCTCCGACC 184
consensus_8812#0      ATTGCTCTGTCCCGGGACCTGCTGCACTTTGCAAGTACTGACAGC-TATGGTGACTGGGA 1018
consensus_8812#2      ATTGCTCTGTCCCGGGGCCTGCTGCACTTTGCAAGTACTGACAGC-TATGGTGACTGGGA 253
                       * ****** *   *  **    **  * * ** *   ** *  *   *  *  *     

consensus_8812#1      CCGACCAACGGCGCCGACTGCCGCGGTATCACCTCG-GCAACG-ACATTGTCGGCTACTT 320
consensus_8812#3      CCGACCACCGCCGNCTCCTGCCGCGGTATCACCTCC-ACGACG-CCGT-GTCGGATTCTT 241
consensus_8812#0      AATATCAGTGTGGGTTCTTGATG-ATTACTACGGCGGACAATGGACCTTGCAACACACGG 1077
consensus_8812#2      AATATCAGTGTGGGTTCTTGATG-ATTACTACGGCGGACAATGGACCTTGCAACACACGG 312
                         * **  *  *     **  *   **  **  *   * * *  * * *       *  

consensus_8812#1      CTACAAGTCCAACACC--TTCACCAACGTCACAGGGGAAGGCCGCCCTTTTGT---TGAC 375
consensus_8812#3      CGACCA---CAGATCC--TTCATCAGCTTCTCAGGCAGNNGCG----CTTCGT---CGGG 289
consensus_8812#0      TCAGCACTATGCGTCCATTTGAGCGGACGATGAGGAGGAGGATGAACCCTGATGACTGCA 1137
consensus_8812#2      TCAGCACTATGCGTCCATTTGAGCGGACGATGAGGAGGAGGATGAACCCTGATGACTGCA 372
                        *  *        **  ** * *        ***     *        *  *    *  

consensus_8812#1      CCCTCGCTCCCCTTCCTGCCCAAGTGCGAGTTTCTCAACGTCGTCGATAGCTGCAATGGC 435
consensus_8812#3      CCCTCGCTCNCCT----------------------------------------------- 302
consensus_8812#0      CTCTTGTCTGGATCGAAGGACGTAAGATGTTTTTCATGTTTTATGACTATGTTCATTGTA 1197
consensus_8812#2      CTCTTGTCTGAATCGAAGGACGTAAGATGTTTTTCATGTTTTATGACTATGTTCATTGTA 432
                      * ** *      *                                               

consensus_8812#1      CTCCTCCTGTGTCGCTGCTGGAGGCTCGCAGATCCACGGAGATTGATTACCTAGTGGTTA 495
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      TACTCACGTCATATGAAATGGACAGTGGGGAAGTACGATGTCTAAGTCGTCCTCGGAGTT 1257
consensus_8812#2      TACTCACGTCATATGAAATGGACAGTGGGGAAGTACGATGTCTGAGTCGTCCTCGGAGTT 492
                                                                                  

consensus_8812#1      ATCCTGCCACTGAACATTGGGTCATCCTGCCTGATTCCGGCTGGTCTGACAAGGTGCAGA 555
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ATTGCGAGCCACCATATCTTCCATATATTCCCTTGTTCTTGGAATCATTAGCAGATGGGC 1317
consensus_8812#2      ATTGCGAGCCACCATATCTTCCATATATTCCCTTGTTCTTGGAATCATTAGCAGATGGGC 552
                                                                                  

consensus_8812#1      CTGCTCGCTTGGGGTTCGATCCAACGGTCTCCTCCTCGCACTTTCATGTGTTTGAGTTTG 615
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      CCTAATAATCTACCGTACTGGATGGCAGCTCTACCTGTGTCAATCTTTTCCGATGATATG 1377
consensus_8812#2      CCCAATAATCTACCGTACTGGATGGCAGCTCTACCTGTGTCAATCTTTTCCGATGATATG 612
                                                                                  

consensus_8812#1      TGGAGGACGGCGCTGCGGATGTCGATGGGAATGTTGATCGTGACGACTATGATGGGCATG 675
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      GGAACTAGATCACCAATTGCTACGAGGATTGAGCCACTTGGACTGCCACAGCATTGTCTT 1437
consensus_8812#2      GGAACTAGATCACCAATTGCTACGAGGATTGAGCCACTTGGACTGCCACAGCATTGTCTT 672
                                                                                  

consensus_8812#1      TCAAAGGGGTGGAAATCTACTCATCTGTAACTGGAGAATGGAGTCACAAGGACAATGGTT 735
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ATCCATCAATAGCATGATATATATGCTTTTCTTTGTTTCTGAGATTGACACATTTCTAAT 1497
consensus_8812#2      ATCCATCAATAGCATGATATATATGCTTTTCTTTGGTTCTGAGATTGACACATTTCTAAT 732
                                                                                  

consensus_8812#1      GGAACTGGGAAATCAGGTTACGCGATGAATCGAATAGTGTGTTTTTTGATGGCGTGCTGC 795
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      GCTTTGTGAAACAGTACTATGTTCTTAAGTTGGATGG-AGTATCAATACCAAAGTTCGGT 1556
consensus_8812#2      GCTTTGTGAAACAGTACTATGTTCTTAAGTTGGATGGGAGTATCAATATCAAAGT----- 787
                                                                                  

consensus_8812#1      ATTTGATCACTATTGAGGATGTGGTGGCAGCGGTCGGTGTGGAGGGGAATACTTGGAGGA 855
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      GTGGTAAAAAAGGTTCTTGCTTCATGTTACTTTTGGTTGTGCTTGATTTCACTCCTGTAA 1616
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      TCATTCCTATGCCTCAAAGTCTAGTTGAGCCTTTCAATGGTATTGGTGAGGGATTCATTG 915
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      CCTGACTTTATGGTGCTAGTTATATGTGTGTACTCAGTGACTGCCATTTTCGGTCTAACT 1676
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      TCCTGTCTCAGGGTTCTCTGTATTTTGTAAACAGCGATCACGATAAACCATATAAAGTAT 975
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      TTATGCCAGTATAGCTGTATGT-------------------------------------- 1698
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      CAGTATGGGTTCTTGAGGACTACAGCAGTGAACAGTGGATCTGGAAGCACACTGTCAGCC 1035
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ------------------------------------------------------------
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ATTTACATCTATTTCAAACCAAGAGACTCCTTTTTGGACATGACTACAAAGTTGTCTCAA 1095
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ------------------------------------------------------------
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      TTCATCCGGAACGGAATAACATTTTCTTGGTTTGGCCGCATAGCAAAATGCTCATGTCCT 1155
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ------------------------------------------------------------
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      ATGAATTGGATAGCAGAGAAGTGCATTTTATATGTGGCATCGGAGGTTGTGAGTGGGTGA 1215
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ------------------------------------------------------------
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      TGTACTATCTTCCTTACGTTCCCTTGTACTTAGAATCACTGGCAGATGGGCATTGATCAT 1275
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ------------------------------------------------------------
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      CGTACTTGCATAGGCGAACGCTTGGTTTGTTAACCTTAAATTATGACATTGGAGTTAGGA 1335
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ------------------------------------------------------------
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      CACCGATAAGATCAGCAGGAACTTGGCAGATCTTTCTGATGTTGTGCTACATTGTTGTAG 1395
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ------------------------------------------------------------
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      GTGGTTGAGTGCGTTCTGCAACCTCACTTTCTGGGGCCAACTTTTCAGTAACTTGGAACT 1455
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ------------------------------------------------------------
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      TAATTCGGATTTTGTAATAGTGATGTTGTATTTGATTGTTTGCGATGTTGAAAACCCTCT 1515
consensus_8812#3      ------------------------------------------------------------
consensus_8812#0      ------------------------------------------------------------
consensus_8812#2      ------------------------------------------------------------
                                                                                  

consensus_8812#1      AGCACTTATTTATGCCAATATTTGTTGAGATTTCAAAAAAAAAAAA 1561
consensus_8812#3      ----------------------------------------------
consensus_8812#0      ----------------------------------------------
consensus_8812#2      ----------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)