|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1767 fasta sequence
[TCTCTCTCTCACACACACACAAATTAAATTGCGAGCAAAAAAGAAAGATTGCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTGCCCTCGATCTTAATTATATCTTACTTATATATCTACCTAGCTATATCTCCTGCCTGCTCTAATTCTTGGATCGATCGCGATGGAGATTAATTGATCTGTACATCGATCCATGCATATCAGATACTGCTCACCCGGCCGCCATCTGCGTGCAATTCGATCTAGCAGCTGGGAAATGAAAGCTAAGAAAGATAGCGTGCACGAGCGTGCAGAATGGCAGCATATGTATGCATTATTCAGTACTGCTAGATGAACAGAATCTAGAAAAAGATGAACTGAACAGCAGCAGCAGCAGCAGATCGTAGGATGGATGGATGGACGGATGGAGCAAGCTAAGCTAAGCTTTCGTTTTGTCGATCCATCCGTCCATCGGTGTCGACCTAGCTAGAAAGGCTGACCTGTCGCGTCGTCCATCCAAGATCGATCCAACCAGCAACCAGGCATCAGACAGGCTCTTTCTTGTCCAGCTGCTGCTGCTGCTAGTACACATACTACACTGTCTCTGCTGCATGCATGCATGCT-GCTCACCTCATCTGATTGAGAGTTCAGAATTGTTGAGAGCAAGCAAGAAATTGAGAAACGGCCAGGACAGATTGGATTGATCTTAATTGGCATATATGCTGCTCGATCGATACTGTCTGTCAGTTCTCAGTTCGTCGATCGATCAAGTCTATATTTGGATATCTGAATCTCTGCAAATGCCAACTCGACCACTAAGCAATTCATCAATGGACATGATCATAGTAATGTCGATCGACGTGCAGTGTCACTCATTGTTGGGAGCACGGTCAAAACCTCCAGTTCATATCATATCATATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATG-AAGTGACGCGAGCCT-GCCTTGAATTGTGCTAGTTTCTCTTTCTCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTTCCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCATGGATATATATACAATTCATGTCTTTTGTATGTACTAATTAATGTGTATTGTCATGTGCAATAATGGAAAATGATGATGTAAAAGTTGAGACGACTGAACTATAAATAAAAATATATATGAAAGATGGCATTATTACAAAAAAAAGA]
[+] EMBL AK066292 [TCTCTCTCTCACACACACACAAATTAAATTGCGAGCAAAAAAGAAAGATTGCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTGCCCTCGATCTTAATTATATCTTACTTATATATCTACCTAGCTATATCTCCTGCCTGCTCTAATTCTTGGATCGATCGCGATGGAGATTAATTGATCTGTACATCGATCCATGCATATCAGATACTGCTCACCCGGCCGCCATCTGCGTGCAATTCGATCTAGCAGCTGGGAAATGAAAGCTAAGAAAGATAGCGTGCACGAGCGTGCAGAATGGCAGCATATGTATGCATTATTCAGTACTGCTAGATGAACAGAATCTAGAAAAAGATGAACTGAACAGCAGCAGCAGCAGCAGATCGTAGGATGGATGGATGGACGGATGGAGCAAGCTAAGCTAAGCTTTCGTTTTGTCGATCCATCCGTCCATCGGTGTCGACCTAGCTAGAAAGGCTGACCTGTCGCGTCGTCCATCCAAGATCGATCCAACCAGCAACCAGGCATCAGACAGGCTCTTTCTTGTCCAGCTGCTGCTGCTGCTAGTACACATACTACACTGTCTCTGCTGCATGCATGCATGCT GCTCACCTCATCTGATTGAGAGTTCAGAATTGTTGAGAGCAAGCAAGAAATTGAGAAACGGCCAGGACAGATTGGATTGATCTTAATTGGCATATATGCTGCTCGATCGATACTGTCTGTCAGTTCTCAGTTCGTCGATCGATCAAGTCTATATTTGGATATCTGAATCTCTGCAAATGCCAACTCGACCACTAAGCAATTCATCAATGGACATGATCATAGTAATGTCGATCGACGTGCAGTGTCACTCATTGTTGGGAGCACGGTCAAAACCTCCAGTTCATATCATATCATATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATG AAGTGACGCGAGCCT GCCTTGAATTGTGCTAGTTTCTCTTTCTCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTTCCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCATGGATATATATACAATTCATGTCTTTTGTATGTACTAATTAATGTGTATTGTCATGTGCAATAATGGAAAATGATGATGTAAAAGTTGAGACGACTGAACTATAAATAAAAATATATATGAAAGA ]
[+] EMBL OSR28241A [ ATGGATGGNNGGACGGATGGAGCAAGCTAAGCTAAGCTTTCGTTTTGTCGATCCATCCGTCCATCGGTGTCGACCTAGCTAGAAAGGTCGACCTGTCGCGTCGTCCATCCAAGATCGATCCAACCAGCAACCAGGCATCAGACAGGCTCTTTCTTGTCCAGCTGCTGCTGCTGCTAGTACACATACTACACTGTCTCTGCTGCATGCATGCATGCTGGCTCACCTCATCTGATTGAGAGTTCAGAATTGTTGAGAGCANGCAGGAAATTGAGAAACGGCCAGGACAGATTGGATTGATCTTAATTGGNATATATGCTGCTCGATCGATACTGTCTGTCAGTTCTCAGT ]
[+] EMBL C72801 [ ATGCATGCATGCT GCTCACCTCATCTGATTGAGAGTTCAGAATTGTTGAGAGCAAGCAAGAAATTGAGAAACGGCCAGGACAGATTGGATTGATCTTAATTGGCATATATGCTGCTCGATCGATACTGTCTGTCAGTTCTCAGTTCGTCGATCGATCAAGTCTATATTTGGATATCTGAATCTCTGCAAATGCCAACTCGACCACTAAGCAATTCATCAATGGACATGATCATAGTAATGTCGATCGACGTGCAGTGTCACTCATTGTTGGGAGCACGGTCAAAACCTCCAGTTCATATCATATCATATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATGAAAGTGACGCGAGCCTGGCCTTGAAT ]
[-] EMBL CB683790 [ ATATCATATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATG AAGTGACGCGAGCCT GCCTTGAATTGTGCTAGTTTCTCTTTCTCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTT CCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCATGGATATATATACAATTCATGTCTTTTGTATGTACTAATTAATGTGTATTGTCATGTGCAATAATGGAAAATGATGATGTAAAAGTTGAGACGACTGAACTATAAGTAAAAATATATATGAAAGATGGCATTATTACAAAAAAAAGA]
[+] EMBL CA753668 [ AGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTTCCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATA ]
consensusID : consensus_8815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[TATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATGAAGTGACGCGAGCCTGCCTTGAATTGTGCTAGTTTCTCTTTCTCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTTCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCATGGATATATATACAATTCATGTCTTTTGTATGTATTAATTAATGTGTATTGTCATGTGCAATAAAGAGCCTGTCTGATGCCTGGTTGCTGGTTGGATCGATCTTGGATGGA]
[-] EMBL CB683400 [TATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATGAAGTGACGCGAGCCTGCCTTGAATTGTGCTAGTTTCTCTTTCTCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTTCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCATGGATATATATACAATTCATGTCTTTTGTATGTATTAATTAATGTGTATTGTCATGTGCAATAAAGAGCCTGTCTGATGCCTGGTTGCTGGTTGGATCGATCTTGGATGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8815#0 TCTCTCTCTCACACACACACAAATTAAATTGCGAGCAAAAAAGAAAGATTGCGGCCATGC 60
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 TCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTA 120
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 GATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCT 180
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 GGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTGCCCTCGATCTT 240
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 AATTATATCTTACTTATATATCTACCTAGCTATATCTCCTGCCTGCTCTAATTCTTGGAT 300
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 CGATCGCGATGGAGATTAATTGATCTGTACATCGATCCATGCATATCAGATACTGCTCAC 360
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 CCGGCCGCCATCTGCGTGCAATTCGATCTAGCAGCTGGGAAATGAAAGCTAAGAAAGATA 420
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 GCGTGCACGAGCGTGCAGAATGGCAGCATATGTATGCATTATTCAGTACTGCTAGATGAA 480
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 CAGAATCTAGAAAAAGATGAACTGAACAGCAGCAGCAGCAGCAGATCGTAGGATGGATGG 540
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 ATGGACGGATGGAGCAAGCTAAGCTAAGCTTTCGTTTTGTCGATCCATCCGTCCATCGGT 600
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 GTCGACCTAGCTAGAAAGGCTGACCTGTCGCGTCGTCCATCCAAGATCGATCCAACCAGC 660
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 AACCAGGCATCAGACAGGCTCTTTCTTGTCCAGCTGCTGCTGCTGCTAGTACACATACTA 720
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 CACTGTCTCTGCTGCATGCATGCATGCTGCTCACCTCATCTGATTGAGAGTTCAGAATTG 780
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 TTGAGAGCAAGCAAGAAATTGAGAAACGGCCAGGACAGATTGGATTGATCTTAATTGGCA 840
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 TATATGCTGCTCGATCGATACTGTCTGTCAGTTCTCAGTTCGTCGATCGATCAAGTCTAT 900
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 ATTTGGATATCTGAATCTCTGCAAATGCCAACTCGACCACTAAGCAATTCATCAATGGAC 960
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 ATGATCATAGTAATGTCGATCGACGTGCAGTGTCACTCATTGTTGGGAGCACGGTCAAAA 1020
consensus_8815#1 ------------------------------------------------------------
consensus_8815#0 CCTCCAGTTCATATCATATCATATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATG 1080
consensus_8815#1 ---------------------TATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATG 39
***************************************
consensus_8815#0 CAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAG 1140
consensus_8815#1 CAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAG 99
************************************************************
consensus_8815#0 GCAGGCAGGAGATTGATGAAGTGACGCGAGCCTGCCTTGAATTGTGCTAGTTTCTCTTTC 1200
consensus_8815#1 GCAGGCAGGAGATTGATGAAGTGACGCGAGCCTGCCTTGAATTGTGCTAGTTTCTCTTTC 159
************************************************************
consensus_8815#0 TCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCA 1260
consensus_8815#1 TCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCA 219
************************************************************
consensus_8815#0 TTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTA 1320
consensus_8815#1 TTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTA 279
************************************************************
consensus_8815#0 ACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGA 1380
consensus_8815#1 ACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGA 339
************************************************************
consensus_8815#0 TCGAGCTGCAGCAATGATCTTTCCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTC 1440
consensus_8815#1 TCGAGCTGCAGCAATGATCTTTCC-TGCAGCAATGATCACGTTGCATGCTTACTTGTTTC 398
************************ ***********************************
consensus_8815#0 TCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGC 1500
consensus_8815#1 TCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGC 458
************************************************************
consensus_8815#0 AGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTG 1560
consensus_8815#1 AGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTG 518
************************************************************
consensus_8815#0 TGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCA 1620
consensus_8815#1 TGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCA 578
************************************************************
consensus_8815#0 TGGATATATATACAATTCATGTCTTTTGTATGTACTAATTAATGTGTATTGTCATGTGCA 1680
consensus_8815#1 TGGATATATATACAATTCATGTCTTTTGTATGTATTAATTAATGTGTATTGTCATGTGCA 638
********************************** *************************
consensus_8815#0 ATAATGGAAAATGATGATG--TAAAAGTTGAGACGACTGAACTATAAATAAAAATATATA 1738
consensus_8815#1 ATAAAGAGCCTGTCTGATGCCTGGTTGCTGGTTGGATCGATCT-TGGATGGA-------- 689
**** * ***** * * ** ** ** ** * ** *
consensus_8815#0 TGAAAGATGGCATTATTACAAAAAAAAGA 1767
consensus_8815#1 -----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||