These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8819#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 4016 fasta sequence [AAACAGAAAGTCCCCGGAAAAGGATCGCCTCGCCGGCCGCCGTTCCCTCCCCACAAACCCAAAATCAACAGCCGGCCGGCCACCGCCACCGCCACCGCCACCTCCCCTTCCTCCTCCTCTCCCGCACCCCCGCCGCCGGCAGCCGCGCGGCGGAGCTGCCGGCGATGGCGACGGCAGGCGGCCCGGGGAGGGCGCACACGGTCCGCGACCTCGCGGAGGAGGGGAAGAAGCGGGCCGTGCTGCTCCTCGTCTTCGCCTTCGGCCTCGCCTTCCTCATGTCCCTGACAAGCTCCTCAGTTTGGATTAACTTGCCATTTGCCACAGCTTTGATTGTTTTATTTCGCTACATATCACTTGACTATGATTTCCGTAGAAAGAGCACAACTACCACAGATAACGATGCCAGTCGCGCACTTACCAAAACAAAAAGTATTGAACCAAATAAAATCCCCTCTATTCAAAAGGATGGAAAGTCAGATTGGAAGAGCAAGGTGAATTCCCCTCCAGTTGAAGCTGCAATTGGACAGTTCACAAGGCACCTTGTCACAGAGTGGGTAACAGATCTATGGTACTCCCGTGTAACACCTGACAAGGAAGGTCCAGAGGAACTCATCAATATAGTTAATAATGTCCTGGGAGAGATATCAGTCCGGGCAAGAAACGTTAACCTTATCGCTCTGCTAACCAGGGATCTGATTGATCTTATATGCGAAAATTTGGAGCTTTATCATTTATGCCAAGCCAAGATTGGAAAAGAGAAGTTTGTTAATCTCTCGACGGAGCGTCGTGATGCTGAACTAAAACTGACCCTTATAACCGAAAACAAGTTGCATCCAGCTTTATTTTCAGCCAGTGCTGAGCACAAGATCCTACAAAGTCTTGCTGATGGGTTGATATCAGTAACAGCAAAACCTCAGGATCTGCAGTGTTACTTCTTCCGATGTACTGCACGAGAACTTCTTGCATGTGCAGTCATGAGACCTGTCGTGAATTTAGCAAACCCAAGGTTTATAAATGAAAGAATTGAATTGTTGGCTCTTTCTCATGCCAACAAGGCAGAAAGAGGAGTTGCAGAATCATTGGAGCATGCTACAATGGTTAAGCAAAGGGAACCTCCTATGCCAACTGTTGATGAACTTGCTGCACTAATAGATCCCACGAGTTCAGGGGTTGAACTTGTGCGATTTAGTCAGGATCAGTCCAAAGCTGCACCAGATACGCAACTCAGTAATACTAGACATCCATCTAACCTCAAACCAAATTCCTCTAGTACTTC-TTTGACCAAT-AGTTCACATCCACTTGAGTCTAGC-ATTTTATCTTCCACTACCCATGGTCATTCGAATT-CCAGTATGTCATTGCA-TTCCCAAAGTAGTGGCAGGACAACTGCAGAATGTTATGAGGGAGAATGGGCACAGACCATGGATATCAGCTCCCAGCAAAAAAGTCAAGCCCTAGCACCTGAGCACCTTGAGAACATGTGGACTAAAGGGAAGAATTACAAATCAGAAAATGTAAAACATGTTGCGAGAGTACCTTCCAAATCTTCTTCTCTAGGCACTTCTCCAGTGCAGCAGTCAGCTCCTTACAGCACTTCTGTTGGTCATTATCCTAGTGCTCCACAAAGGCAGACAACTATGTCTCGTTCTGATGACCAACATTTGATTAAACACTCAACTACTGCTGCATACTTAAATGGCACCAATCATCTGAGGATGGCTTTATCCAGAGAAAGTGCAGATCATGCCAGCCAAGAAGACTTTGGAGTGGACAGTGAGAGTTCATATGCCACTGAGGAGGATGAGAATAACAATGTGACTGGGCTTGACTCTCCAGTAACGAGAGTTTGGGACAGCAAAAGTAAAGGAAATGCCACCTCATCACATATACACCATCCACTTGAATCTCCAGGTTTCCATAAAGCAAAGAAGAACAGAAGTCATATTGGCAAGTTGAAAATGACAAAAACTTCAGGAAGAAAAAGGTCAAGGTCAAATTCTCAAAAGCCTCCTGTCTGGCAAGAGGTGGAGAGATCATCTTTATTGGTGGGGGATGATTTAAATATACTGAATACATCGGCAGATGATTCAAGGACGGATGGACTGTATGATGATACTGAGGTGGAAAGTATGTCAAGGATGTTTAGTGGTGCGAATGCTTCATCTTTGTCATTGGCATCAACTGACTCTTCATATTCATCAAATTATTCCACCACTAATGTGCTAGAAGACTCTTATTTGAAGTTGAAATGTGAGGTGGTAGGAGCTAGCATTGTGAAAAGTGGATCTGGCATGTTTGCTGTATATTCTGTTTCTGTGACTGATGCCAATGGTAATAGTTGGTCCATCAAGAGGAGATTTCGCCATTTCGAAGAGCTACATCGGCGTTTGAAAGAATATTCTCAGTACAATCTTCACTTGCCTCCAAAGCACTTCCTTTCGTCAGGGCTAGAGGTCCCTGTTGTTCGAGAGAGATGCAAGTTGCTTGACATATATCTAAAGAAGCTTCTTCAGATTCCCACTGTTTCAAGCTGTATAGAGGTCTGGGATTTTCTAAGTGTTGATTCACAGACATACATCTTCACTGACACTCTCTCAGTTATCCAGACGTTGTCAGTCAATTTAGATGAAAGATCAAAAGAGAAGAATACAAAATCATTCAATTCTTCCCAAGCTTTGAATGGGAATTTGGTCTCTGCTAGCCAATCTTTGCATGTACATAAAGATGATACCATGCCGAAGGAGAAGGATAAAGACTTTGATGCTGTTGATGGTTTGAGATCAAGGAAGAGGAACACGGAACAGAATTTAGGAATTGGTGTTGGCAACACAAATGCCAATCTTCATGAAGACCTCTCTGGAAGTGACCCTGAACAGAACGAGCATTCATTTATAATAAATTCGGGAAATTCTAAAAAGACACTGTCAAGTGAAACTGACTACCCGCCTCAAAGTTTGGAGTCTGATGGATACTCAGTAGCTCCTAATGATTGGATGGCTCCAAATCTTAGTGTGCCCTTATTTCATTTGGTTGATGTGGTTTTTCAGCTCCAAGATGGTGGCTGGATCAGGAGGCAAGCATTTTGGGTAGTGAAGCAAATACTGCAACTGGGAATGGGAGACACATTTGATGACTGGCTTGTTGAGAAAATCCAGTTACTTAGGAAGGGGAGGATTGTTGCTTTTGCAGTTAAGCGGGTTGAACAAATACTCTGGCCAGATGGAATTTTCCTGACAAAACATCCTAAGAGAAAAGCAGCAACACCTCCACCTGGTTCCCAGAGTAACGGCATGGCCAACTATCTGACTGATGAACAACGACTAGAGGATGCTCATCGTGCAAATTTTGTCCATGAACTAATGATAGAGAAAGCACCATCTGCGTTAGTGAGTCTGGTTGGTCGAAAGGAGTACGAAAGATGTGCTCAGGACGTCTACTTCTTTCTTCAGTCTCCAGTTTGTTTGAAGCAGCTAGCATTTGAAGTCCTAGAGCTCCTTGTACTAGCTGCATTTCCAGAGTTGGATGACATTGTGAAGAAGTGGCATGAAGACAAACAGCAGTTGTACGCCCTGGAATAATTTTTCATGGTGAACGAATTATTCCGCAGGGTCAGATCAAACACGTATGCTTGATGCAGAGTGCAGATCCATTCCAGTGTAAATAAGGGAATCCCGAAATCAGTGCTGTTTTGACATTTCTGTTTAAATGGAGGCGACTTCGTGCAGTGTGAATATGATTAGTTAGCAGTTTGTGAGAACGGTCCCTTCTCCCCCATGGACCAGTAGGCCGTTTTTTTGTTCGACAGACTGGTCTCTCTTTTTTTTTCTCATAGAATCATAGAGTTTGGTATACATAATGCAGCTTGAAAGAAAGAGGTCACACAGTATTTTTTTACTGTAGGTGTAGGGTTGATGTACTTTTTGTTAGCGTCTGTTTTTTGTCCCCTGTGGGTGTTACCAAATTTTGTAACTCCGCA-TTACGTTGAATGAAATAAAGAAGTGATCCAGGAAAAAAAAAGA] [+] EMBL AK100131 [AAACAGAAAGTCCCCGGAAAAGGATCGCCTCGCCGGCCGCCGTTCCCTCCCCACAAACCCAAAATCAACAGCCGGCCGGCCACCGCCACCGCCACCGCCACCTCCCCTTCCTCCTCCTCTCCCGCACCCCCGCCGCCGGCAGCCGCGCGGCGGAGCTGCCGGCGATGGCGACGGCAGGCGGCCCGGGGAGGGCGCACACGGTCCGCGACCTCGCGGAGGAGGGGAAGAAGCGGGCCGTGCTGCTCCTCGTCTTCGCCTTCGGCCTCGCCTTCCTCATGTCCCTGACAAGCTCCTCAGTTTGGATTAACTTGCCATTTGCCACAGCTTTGATTGTTTTATTTCGCTACATATCACTTGACTATGATTTCCGTAGAAAGAGCACAACTACCACAGATAACGATGCCAGTCGCGCACTTACCAAAACAAAAAGTATTGAACCAAATAAAATCCCCTCTATTCAAAAGGATGGAAAGTCAGATTGGAAGAGCAAGGTGAATTCCCCTCCAGTTGAAGCTGCAATTGGACAGTTCACAAGGCACCTTGTCACAGAGTGGGTAACAGATCTATGGTACTCCCGTGTAACACCTGACAAGGAAGGTCCAGAGGAACTCATCAATATAGTTAATAATGTCCTGGGAGAGATATCAGTCCGGGCAAGAAACGTTAACCTTATCGCTCTGCTAACCAGGGATCTGATTGATCTTATATGCGAAAATTTGGAGCTTTATCATTTATGCCAAGCCAAGATTGGAAAAGAGAAGTTTGTTAATCTCTCGACGGAGCGTCGTGATGCTGAACTAAAACTGACCCTTATAACCGAAAACAAGTTGCATCCAGCTTTATTTTCAGCCAGTGCTGAGCACAAGATCCTACAAAGTCTTGCTGATGGGTTGATATCAGTAACAGCAAAACCTCAGGATCTGCAGTGTTACTTCTTCCGATGTACTGCACGAGAACTTCTTGCATGTGCAGTCATGAGACCTGTCGTGAATTTAGCAAACCCAAGGTTTATAAATGAAAGAATTGAATTGTTGGCTCTTTCTCATGCCAACAAGGCAGAAAGAGGAGTTGCAGAATCATTGGAGCATGCTACAATGGTTAAGCAAAGGGAACCTCCTATGCCAACTGTTGATGAACTTGCTGCACTAATAGATCCCACGAGTTCAGGGGTTGAACTTGTGCGATTTAGTCAGGATCAGTCCAAAGCTGCACCAGATACGCAACTCAGTAATACTAGACATCCATCTAACCTCAAACCAAATTCCTCTAGTACTTC TTTGACCAAT AGTTCACATCCACTTGAGTCTAGC ATTTTATCTTCCACTACCCATGGTCATTCGAATT CCAGTATGTCATTGCA TTCCCAAAGTAGTGGCAGGACAACTGCAGAATGTTATGAGGGAGAATGGGCACAGACCATGGATATCAGCTCCCAGCAAAAAAGTCAAGCCCTAGCACCTGAGCACCTTGAGAACATGTGGACTAAAGGGAAGAATTACAAATCAGAAAATGTAAAACATGTTGAGAGAGTACCTTCCAAATCTTCTTCTCTAGGCACTTCTCCAGTGCAGCAGTCAGCTCCTTACAGCACTTCTGTTGGTCATTATCCTAGTGCTCCACAAAGGCAGACAACTATGTCTCGTTCTGATGACCAACATTTGATTAAACACTCAACTACTGCTGCATACTTAAATGGCACCAATCATCTGAGGATGGCTTTATCCAGAGAAAGTGCAGATCATGCCAGCCAAGAAGACTTTGGAGTGGACAGTGAGAGTTCATATGCCACTGAGGAGGATGAGAATAACAATGTGACTGGGCTTGACTCTCCAGTAACGAGAGTTTGGGACAGCAAAAGTAAAGGAAATGCCACCTCATCACATATACACCATCCACTTGAATCTCCAGGTTTCCATAAAGCAAAGAAGAACAGAAGTCATATTGGCAAGTTGAAAATGACAAAAACTTCAGGAAGAAAAAGGTCAAGGTCAAATTCTCAAAAGCCTCCTGTCTGGCAAGAGGTGGAGAGATCATCTTTATTGGTGGGGGATGATTTAAATATACTGAATACATCGGCAGATGATTCAAGGACGGATGGACTGTATGATGATACTGAGGTGGAAAGTATGTCAAGGATGTTTAGTGGTGCGAATGCTTCATCTTTGTCATTGGCATCAACTGACTCTTCATATTCATCAAATTATTCCACCACTAATGTGCTAGAAGACTCTTATTTGAAGTTGAAATGTGAGGTGGTAGGAGCTAGCATTGTGAAAAGTGGATCTGGCATGTTTGCTGTATATTCTGTTTCTGTGACTGATGCCAATGGTAATAGTTGGTCCATCAAGAGGAGATTTCGCCATTTCGAAGAGCTACATCGGCGTTTGAAAGAATATTCTCAGTACAATCTTCACTTGCCTCCAAAGCACTTCCTTTCGTCAGGGCTAGAGGTCCCTGTTGTTCGAGAGAGATGCAAGTTGCTTGACATATATCTAAAGAAGCTTCTTCAGATTCCCACTGTTTCAAGCTGTATAGAGGTCTGGGATTTTCTAAGTGTTGATTCACAGACATACATCTTCACTGACACTCTCTCAGTTATCCAGACGTTGTCAGTCAATTTAGATGAAAGATCAAAAGAGAAGAATACAAAATCATTCAATTCTTCCCAAGCTTTGAATGGGAATTTGGTCTCTGCTAGCCAATCTTTGCATGTACATAAAGATGATACCATGCCGAAGGAGAAGGATAAAGACTTTGATGCTGTTGATGGTTTGAGATCAAGGAAGAGGAACACGGAACAGAATTTAGGAATTGGTGTTGGCAACACAAATGCCAATCTTCATGAAGACCTCTCTGGAAGTGACCCTGAACAGAACGAGCATTCATTTATAATAAATTCGGGAAATTCTAAAAAGACACTGTCAAGTGAAACTGACTACCCGCCTCAAAGTTTGGAGTCTGATGGATACTCAGTAGCTCCTAATGATTGGATGGCTCCAAATCTTAGTGTGCCCTTATTTCATTTGGTTGATGTGGTTTTTCAGCTCCAAGATGGTGGCTGGATCAGGAGGCAAGCATTTTGGGTAGTGAAGCAAATACTGCAACTGGGAATGGGAGACACATTTGATGACTGGCTTGTTGAGAAAATCCAGTTACTTAGGAAGGGGAGGATTGTTGCTTTTGCAGTTAAGCGGGTTGAACAAATACTCTGGCCAGATGGAATTTTCCTGACAAAACATCCTAAGAGAAAAGCAGCAACACCTCCACCTGGTTCCCAGAGTAACGGCATGGCCAACTATCTGACTGATGAACAACGACTAGAGGATGCTCATCGTGCAAATTTTGTCCATGAACTAATGATAGAGAAAGCACCATCTGCGTTAGTGAGTCTGGTTGGTCGAAAGGAGTACGAAAGATGTGCTCAGGACGTCTACTTCTTTCTTCAGTCTCCAGTTTGTTTGAAGCAGCTAGCATTTGAAGTCCTAGAGCTCCTTGTACTAGCTGCATTTCCAGAGTTGGATGACATTGTGAAGAAGTGGCATGAAGACAAACAGCAGTTGTACGCCCTGGAATAATTTTTCATGGTGAACGAATTATTCCGCAGGGTCAGATCAAACACGTATGCTTGATGCAGAGTGCAGATCCATTCCAGTGTAAATAAGGGAATCCCGAAATCAGTGCTGTTTTGACATTTCTGTTTAAATGGAGGCGACTTCGTGCAGTGTGAATATGATTAGTTAGCAGTTTGTGAGAACGGTCCCTTCTCCCCCATGGACCAGTAGGCCGTTTTTTTGTTCGACAGACTGGTCTCTCTTTTTTTTTCTCATAGAATCATAGAGTTTGGTATACATAATGCAGCTTGAAAGAAAGAGGTCACACAGTATTTTTTTACTGTAGGTGTAGGGTTGATGTACTTTTTGTTAGCGTCTGTTTTTTGTCCCCTGTGGGTGTTACCAAATTTTGTAACTCCGCA TTACGTTGAATGAAATAAAGAAGTGATCCA ] [+] EMBL AK059334 [ GAATTCCCCTCCAGTTGAAGCTGCAATTGAACAGTTCACAAGGCACCTTGTCACAGAGTGGGTAACAGATCTATGGTACTCCCGTGTAACACCTGACAAGGAAGGTCCAGAGGAACTCATCAATATAGTTAATAATGTCCTGGGAGAGATATCAGTCCGGGCAAGAAACGTTAACCTTATCGCTCTGCTAACCAGGGATCTGATTGATCTTATATGCAAAAATTTGGAGCTTTATCATTTATGCCAAGCCAAGATTGGAAAAGAGAAGTTTGTTAATCTCTCGACGGAGCGTCGTGATGCTGAACTAAAACTGACCCTTATAACCGAAAACAAGTTGCATCCAGCTTTATTTTCAGCCAGTGCTGAGCACAAGATCCTACAAAGTCTTGCTGATGGGTTGATATCAGTAACAGCAAAACCTCAGGATCTGCAGTGTTACTTCTTCCGATGTACTGCACGAGAACTTCTTGCATGTGCAGTCATGAGACCTGTCGTGAATTTAGCAAACCCAAGGTTTATAAATGAAAGAATTGAATTGTTGGCTCTTTCTCATGCCAACAAGGCAGAAAGAGGAGTTGCAGAATCATTGGAGCATGCTACAATGGTTAAGCAAAGGGAACCTCCTATGCCAACTGTTGATGAACTTGCTGCACTAATAGATCCCACGAGTTCAGGGGTTGAACTTGTGCGATTTAGTCAGGATCAGTCCAAAGCTGCACCAGATACGCAACTCAGTAATACTAGACATCCATCTAACCTCAAACCAAATTCCTCTAGTACTTC TTTGACCAAT AGTTCACATCCACTTGAGTCTAGC ATTTTATCTTCCACTACCCATGGTCATTCGAATT CCAGTATGTCATTGCA TTCCCAAAGTAGTGGCAGGACAACTGCAGAATGTTATGAGGGAGAATGGGCACAGACCATGGATATCAGCTCCCAGCAAAAAAGTCAAGCCCTAGCACCTGAGCACCTTGAGAACATGTGGACTAAAGGGAAGAATTACAAATCAGAAAATGTAAAACATGTTGCGAGAGTACCTTCCAAATCTTCTTCTCTAGGCACTTCTCCAGTGCAGCAGTCAGCTCCTTACAGCACTTCTGTTGGTCATTATCCTAGTGCTCCACAAAGGCAGACAACTATGTCTCGTTCTGATGACCAACATTTGATTAAACACTCAACTACTGCTGCATACTTAAATGGCACCAATCATCTGAGGATGGCTTTATCCAGAGAAAGTGCAGATCATGCCAGCCAAGAAGACTTTGGAGTGGACAGTGAGAGTTCATATGCCACTGAGGAGGATGAGAATAACAATGTGACTGGGCTTGACTCTCCAGTAACGAGAGTTTGGGACAGCAAAAGTAAAGGAAATGCCACCTCATCACATATACACCATCCACTTGAATCTCCAGGTTTCCATAAAGCAAAGAAGAACAGAAGTCATATTGGCAAGT ] [+] EMBL C91699 [ TTGCATGTGCAGTCATGAGACCTGTCGTGAATTTAGCAAACCCAAGGTTTATAAATGAAAGAATTGAATTGTNGGCTCTTTCTCATGCCAACAAGGCAGAAAGAGGAGTTGCAGAATCATTGGAGCATGCTACAATGGTTAAGCAAAGGGAACCTCCTATGCCAACTGTTGATGAACTTGCTGCACTAATAGATCCCACGAGTTCAGGGGGTGAACTTGTGCGATTTAGTCAGGATCAGTCCAAAGCTGCACCAGATACGCAACTCAGTAATACTAGACATCCATCTNANCTCAAACCCAATTCCNCTAGTACTTCTTTTGACCAATAAGTTCACATCCACTTGAGTNTAGCAATTTTATCNTCCACTACCCATGGNCATTCGAATTCCCGGTATGTCATTGGAGTTCCCAAg ] [+] EMBL CB635751 [ TGATGACCTTGCTGCACTAATAGATCCCACGAGTTCAGGGGTTGAACTTGTGCGATTTAGTCAGGATCAGTCCAAAGCTGCACCAGATACGCAACTCAGTAATACTAGACATCCATCTAACCTCAAACCAAATTCCTCTAGTACTTC TTTGACCAAT AGTTCACATCCACTTGAGTCTAGC ATTTTATCTTCCACTACCCATGGTCATTCGAATT CCAGTATGTCATTGCA TTCCCAAAGTAGTGGCAGGACAACTGCAGAATGTTATGAGGGAGAATGGGCACAGACCATGGATATCAGCTCCCAGCGAAAAAGTCAAGCCCTAGCACCTGAGCACCTTGAGAACATGTGGACTAAAGGGAAGAATTACAAATCAGAAAATGTAAAACATGTTGCGAGAGTACCTTCCAAATCTTCTTCTCTAGGCACTTCTCCAGTGCAGCAGTCAGCTCCTTACAGCACTTCTGTTGGTCATTATCCTAGTGCTCCACAAAGGCAGACAACTATGTCTCGTTCTGATGACCAACATTTGATTAAACACTCAACTACTGCTGCATACTTAAATGGCACCAATCATCTGAGGATGGCTTTATCCAGAGAAAGTGCAGATCATGCCAGCCAAGAAGACTTTGGAGTGGACAGTGAGAGTTCATATGCCACTGAGGAGGATGAGAATAACAATGTGACTGGGCTTGACTCTCCAGTAACGAGAGTTTGGGACAGCAAAAGTAAAGGAAATGCCACCTCATCACATATACACCATCCACTTGAATCTCCAGGTT ] [-] EMBL CB635752 [ TTCCTGACAAAACATCCTAAGAGAAAAGCAGCAACACCTCCACCTGGTTCCCAGAGTAACGGCATGGCCAACTATCTGACTGATGAACAACGACTAGAGGATGCTCATCGTGCAATTTTTGTCCATGAACTAATGATAGAGAAAGCACCATCTGCGTTAGTGAGTCTGGTTGGTCGAAAGGAGTACGAAAGATGTGCTCAGGACGTCTACTTCTTTCTTCAGTCTCCAGTTTGTTTGAAGCAGCTAGCATTTGAAGTCCTAGAGCTCCTTGTACTAGCTGCATTTCCAGAGTTGGATGACATTGTGAAGAAGTGGCATGAAGACAAACAGCAGTTGTACGCCCTGGAATAATTTTTCATGGTGAACGAATTATTCCGCAGGGTCAGATCAAACACGTATGCTTGATGCAGAGTGCAGATCCATTCCAGTGTAAATAAGGGAATCCCGAAATCAGTGCTGTTTTGACATTTCTGTTTAAATGGAGGCGACTTCGTGCAGTGTGAATATGATTAGTTAGCAGTTTGTGAGAACGGTCCCTTCTCCCCCATGGACCAGTAGGCCGTTTTTTTGTTCGACAGACTGGTCTCTC TTTTTTTCTCATAGAATCATAGAGTTTGGTATACATAATGCAGCTTGAAAGAAAGAGGTCACACAGTA TTTTTTACTGTAGGTGTAGGGTTGATGTACTTTTTGTTAGCGTCTGTTTTTTGTCCCCTGTGGGTGT CAAATTTTGTAACTCCGCAGGTACGTTGAATGAAATAAAGAAGTGATCCAGGAAAAAAAAAGA] consensusID : consensus_8819#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [TTTTTTTTTTTTCTTTATTGGTGGGGGATGATTTAAATATACTGAATACATCGGCAGATGATTCAAGGACGGATGGACTGTATGATGATACTGAGGTGGAAAGTATGTCAAGGATGTTTAGTGGTGCGAATGCTTCATCTTTGTCATTGGCATCAACTGACTCTTCATATTCATCAAATTATTCCACCACTAATGTGCTAGAAGACTCTTATTTGAAGTTGAAATGTGAGGTGGTAGGAGCTAGCATTNTGAAAAGTGGATCTGGCATGTTTGCTGTNTATTCTGTTTCTGTGACCTNATGCCAATGGGNANTAGTTGGTCCNTCANGAGGNGGATTCGCCCATTTCGAAGNGCNNACANTCCGGCGGTTTGAAAGGAATATTCCNCAAGTNCAATNNTCAAATTTCCCCCCAATGNACNTNNCCNTTNCTGCAAGGGNTTAGGNGGCCCCCCNTTTNTNCGGGGGGNTTNNCAATGTGNTTGCCCANTTNCCTTAANGGGGTTNTTNAAGNTCCCCNTGTCCANCCNTTANAGGGGCNTGGNGTCCNNGGGNTTTNCNNNGGNATCCNCNCCNTNNACNCNCNGNTCCCCNCNNNNNNNCCCTTTTNGNNNCCCCCANAGGNGGGCNCNANANNTTNTTCNCCCTCNCNTTTTTNNCNTCNNTNTNNNCGTNTTTNNNCTCTTTTGNTCNCNNNNGGGCNTCCCNCTCNTTTTTTTNNC] [+] EMBL D43360 [TTTTTTTTTTTTCTTTATTGGTGGGGGATGATTTAAATATACTGAATACATCGGCAGATGATTCAAGGACGGATGGACTGTATGATGATACTGAGGTGGAAAGTATGTCAAGGATGTTTAGTGGTGCGAATGCTTCATCTTTGTCATTGGCATCAACTGACTCTTCATATTCATCAAATTATTCCACCACTAATGTGCTAGAAGACTCTTATTTGAAGTTGAAATGTGAGGTGGTAGGAGCTAGCATTNTGAAAAGTGGATCTGGCATGTTTGCTGTNTATTCTGTTTCTGTGACCTNATGCCAATGGGNANTAGTTGGTCCNTCANGAGGNGGATTCGCCCATTTCGAAGNGCNNACANTCCGGCGGTTTGAAAGGAATATTCCNCAAGTNCAATNNTCAAATTTCCCCCCAATGNACNTNNCCNTTNCTGCAAGGGNTTAGGNGGCCCCCCNTTTNTNCGGGGGGNTTNNCAATGTGNTTGCCCANTTNCCTTAANGGGGTTNTTNAAGNTCCCCNTGTCCANCCNTTANAGGGGCNTGGNGTCCNNGGGNTTTNCNNNGGNATCCNCNCCNTNNACNCNCNGNTCCCCNCNNNNNNNCCCTTTTNGNNNCCCCCANAGGNGGGCNCNANANNTTNTTCNCCCTCNCNTTTTTNNCNTCNNTNTNNNCGTNTTTNNNCTCTTTTGNTCNCNNNNGGGCNTCCCNCTCNTTTTTTTNNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8819#0 AAACAGAAAGTCCCCGGAAAAGGATCGCCTCGCCGGCCGCCGTTCCCTCCCCACAAACCC 60 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AAAATCAACAGCCGGCCGGCCACCGCCACCGCCACCGCCACCTCCCCTTCCTCCTCCTCT 120 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 CCCGCACCCCCGCCGCCGGCAGCCGCGCGGCGGAGCTGCCGGCGATGGCGACGGCAGGCG 180 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 GCCCGGGGAGGGCGCACACGGTCCGCGACCTCGCGGAGGAGGGGAAGAAGCGGGCCGTGC 240 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TGCTCCTCGTCTTCGCCTTCGGCCTCGCCTTCCTCATGTCCCTGACAAGCTCCTCAGTTT 300 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 GGATTAACTTGCCATTTGCCACAGCTTTGATTGTTTTATTTCGCTACATATCACTTGACT 360 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 ATGATTTCCGTAGAAAGAGCACAACTACCACAGATAACGATGCCAGTCGCGCACTTACCA 420 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AAACAAAAAGTATTGAACCAAATAAAATCCCCTCTATTCAAAAGGATGGAAAGTCAGATT 480 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 GGAAGAGCAAGGTGAATTCCCCTCCAGTTGAAGCTGCAATTGGACAGTTCACAAGGCACC 540 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TTGTCACAGAGTGGGTAACAGATCTATGGTACTCCCGTGTAACACCTGACAAGGAAGGTC 600 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 CAGAGGAACTCATCAATATAGTTAATAATGTCCTGGGAGAGATATCAGTCCGGGCAAGAA 660 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 ACGTTAACCTTATCGCTCTGCTAACCAGGGATCTGATTGATCTTATATGCGAAAATTTGG 720 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AGCTTTATCATTTATGCCAAGCCAAGATTGGAAAAGAGAAGTTTGTTAATCTCTCGACGG 780 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AGCGTCGTGATGCTGAACTAAAACTGACCCTTATAACCGAAAACAAGTTGCATCCAGCTT 840 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TATTTTCAGCCAGTGCTGAGCACAAGATCCTACAAAGTCTTGCTGATGGGTTGATATCAG 900 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TAACAGCAAAACCTCAGGATCTGCAGTGTTACTTCTTCCGATGTACTGCACGAGAACTTC 960 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TTGCATGTGCAGTCATGAGACCTGTCGTGAATTTAGCAAACCCAAGGTTTATAAATGAAA 1020 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 GAATTGAATTGTTGGCTCTTTCTCATGCCAACAAGGCAGAAAGAGGAGTTGCAGAATCAT 1080 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TGGAGCATGCTACAATGGTTAAGCAAAGGGAACCTCCTATGCCAACTGTTGATGAACTTG 1140 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 CTGCACTAATAGATCCCACGAGTTCAGGGGTTGAACTTGTGCGATTTAGTCAGGATCAGT 1200 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 CCAAAGCTGCACCAGATACGCAACTCAGTAATACTAGACATCCATCTAACCTCAAACCAA 1260 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 ATTCCTCTAGTACTTCTTTGACCAATAGTTCACATCCACTTGAGTCTAGCATTTTATCTT 1320 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 CCACTACCCATGGTCATTCGAATTCCAGTATGTCATTGCATTCCCAAAGTAGTGGCAGGA 1380 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 CAACTGCAGAATGTTATGAGGGAGAATGGGCACAGACCATGGATATCAGCTCCCAGCAAA 1440 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AAAGTCAAGCCCTAGCACCTGAGCACCTTGAGAACATGTGGACTAAAGGGAAGAATTACA 1500 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AATCAGAAAATGTAAAACATGTTGCGAGAGTACCTTCCAAATCTTCTTCTCTAGGCACTT 1560 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 CTCCAGTGCAGCAGTCAGCTCCTTACAGCACTTCTGTTGGTCATTATCCTAGTGCTCCAC 1620 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AAAGGCAGACAACTATGTCTCGTTCTGATGACCAACATTTGATTAAACACTCAACTACTG 1680 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 CTGCATACTTAAATGGCACCAATCATCTGAGGATGGCTTTATCCAGAGAAAGTGCAGATC 1740 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 ATGCCAGCCAAGAAGACTTTGGAGTGGACAGTGAGAGTTCATATGCCACTGAGGAGGATG 1800 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AGAATAACAATGTGACTGGGCTTGACTCTCCAGTAACGAGAGTTTGGGACAGCAAAAGTA 1860 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AAGGAAATGCCACCTCATCACATATACACCATCCACTTGAATCTCCAGGTTTCCATAAAG 1920 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 CAAAGAAGAACAGAAGTCATATTGGCAAGTTGAAAATGACAAAAACTTCAGGAAGAAAAA 1980 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 GGTCAAGGTCAAATTCTCAAAAGCCTCCTGTCTGGCAAGAGGTGGAGAGATCATCTTTAT 2040 consensus_8819#1 ------------------------------------------TTTTTTTTTTTTCTTTAT 18 * * ******* consensus_8819#0 TGGTGGGGGATGATTTAAATATACTGAATACATCGGCAGATGATTCAAGGACGGATGGAC 2100 consensus_8819#1 TGGTGGGGGATGATTTAAATATACTGAATACATCGGCAGATGATTCAAGGACGGATGGAC 78 ************************************************************ consensus_8819#0 TGTATGATGATACTGAGGTGGAAAGTATGTCAAGGATGTTTAGTGGTGCGAATGCTTCAT 2160 consensus_8819#1 TGTATGATGATACTGAGGTGGAAAGTATGTCAAGGATGTTTAGTGGTGCGAATGCTTCAT 138 ************************************************************ consensus_8819#0 CTTTGTCATTGGCATCAACTGACTCTTCATATTCATCAAATTATTCCACCACTAATGTGC 2220 consensus_8819#1 CTTTGTCATTGGCATCAACTGACTCTTCATATTCATCAAATTATTCCACCACTAATGTGC 198 ************************************************************ consensus_8819#0 TAGAAGACTCTTATTTGAAGTTGAAATGTGAGGTGGTAGGAGCTAGCATTGTGAAAAGTG 2280 consensus_8819#1 TAGAAGACTCTTATTTGAAGTTGAAATGTGAGGTGGTAGGAGCTAGCATTNTGAAAAGTG 258 ************************************************** ********* consensus_8819#0 GATCTGGCATGTTTGCTGTATATTCTGTTTCTGTGAC-TGATGCCAATGG-TAATAGTTG 2338 consensus_8819#1 GATCTGGCATGTTTGCTGTNTATTCTGTTTCTGTGACCTNATGCCAATGGGNANTAGTTG 318 ******************* ***************** * ********** * ****** consensus_8819#0 GTCCATCAAGAGGAGATTTCGCC-ATTTCGAAGAGCTA---CATCGGCG-TTTGAAAG-A 2392 consensus_8819#1 GTCCNTCANGAGGNGGATTCGCCCATTTCGAAGNGCNNACANTCCGGCGGTTTGAAAGGA 378 **** *** **** * ****** ********* ** ***** ******** * consensus_8819#0 ATATTCTC--AGTACAATCTTCA--CTTGCCTCCAAAGCACTTCCTTTCGTC-----AGG 2443 consensus_8819#1 ATATTCCNCAAGTNCAATNNTCAAATTTCCCCCCAATGNACNTNNCCNTTNCTGCAAGGG 438 ****** *** **** *** ** ** **** * ** * * ** consensus_8819#0 GCTAGAGG---TCCCTGTTGTTCGAGAGAGATGCAAGT-TGCTTGAC-ATATATCTAAAG 2498 consensus_8819#1 NTTAGGNGGCCCCCCNTTTNTNCGGGGGGNTTNNCAATGTGNTTGCCCANTTNCCTTAAN 498 *** * *** ** * ** * * * * * ** *** * * * ** ** consensus_8819#0 AAGCTTCTTCAGATTCCCACTGTTTCAAGCTGTATAGAGGTCTGGGATTTTCTAAGTGTT 2558 consensus_8819#1 GGGGTTNTTNAAGNTCCCCNTGTC-CANCCNTTANAGGGGCNTGGNGT--CCNNGGGNTT 555 * ** ** * **** *** ** * ** ** ** *** * * * ** consensus_8819#0 GATTCACAGACATACATCTTCACTGACACTCTCTCAGTTATCCAGACGTTGTCAGTCAAT 2618 consensus_8819#1 TNCNNNGGNATCCNCNCCNTNNACNCNCNGNTCCCCNCNNNNNNNCCCTTTTNGNNNCCC 615 * * * * ** * * ** * consensus_8819#0 TTAGATGAAAGATCAAAAGAGAAGAATACAAAATCATTCAATTCTTCCCAAGCTTTGAAT 2678 consensus_8819#1 CCANAGGNGGGCNCNAN-------ANNTTNTTCNCCCTCNCNTTTTTNNCNTCNNTNTNN 668 * * * * * * * * ** * ** * * consensus_8819#0 GGGAATTTGGTCTCTGCTAGCCAATCTTTG-CATGTACATAAAGATGATACCATGCCGAA 2737 consensus_8819#1 NCGTNTTTNNNCTCTTTTGNTCNCNNNNGGGCNTCCCNCTCNTTTTTTTNNC-------- 720 * *** **** * * * * * * * * * consensus_8819#0 GGAGAAGGATAAAGACTTTGATGCTGTTGATGGTTTGAGATCAAGGAAGAGGAACACGGA 2797 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 ACAGAATTTAGGAATTGGTGTTGGCAACACAAATGCCAATCTTCATGAAGACCTCTCTGG 2857 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AAGTGACCCTGAACAGAACGAGCATTCATTTATAATAAATTCGGGAAATTCTAAAAAGAC 2917 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 ACTGTCAAGTGAAACTGACTACCCGCCTCAAAGTTTGGAGTCTGATGGATACTCAGTAGC 2977 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TCCTAATGATTGGATGGCTCCAAATCTTAGTGTGCCCTTATTTCATTTGGTTGATGTGGT 3037 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TTTTCAGCTCCAAGATGGTGGCTGGATCAGGAGGCAAGCATTTTGGGTAGTGAAGCAAAT 3097 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 ACTGCAACTGGGAATGGGAGACACATTTGATGACTGGCTTGTTGAGAAAATCCAGTTACT 3157 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TAGGAAGGGGAGGATTGTTGCTTTTGCAGTTAAGCGGGTTGAACAAATACTCTGGCCAGA 3217 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TGGAATTTTCCTGACAAAACATCCTAAGAGAAAAGCAGCAACACCTCCACCTGGTTCCCA 3277 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 GAGTAACGGCATGGCCAACTATCTGACTGATGAACAACGACTAGAGGATGCTCATCGTGC 3337 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 AAATTTTGTCCATGAACTAATGATAGAGAAAGCACCATCTGCGTTAGTGAGTCTGGTTGG 3397 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TCGAAAGGAGTACGAAAGATGTGCTCAGGACGTCTACTTCTTTCTTCAGTCTCCAGTTTG 3457 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TTTGAAGCAGCTAGCATTTGAAGTCCTAGAGCTCCTTGTACTAGCTGCATTTCCAGAGTT 3517 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 GGATGACATTGTGAAGAAGTGGCATGAAGACAAACAGCAGTTGTACGCCCTGGAATAATT 3577 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TTTCATGGTGAACGAATTATTCCGCAGGGTCAGATCAAACACGTATGCTTGATGCAGAGT 3637 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 GCAGATCCATTCCAGTGTAAATAAGGGAATCCCGAAATCAGTGCTGTTTTGACATTTCTG 3697 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TTTAAATGGAGGCGACTTCGTGCAGTGTGAATATGATTAGTTAGCAGTTTGTGAGAACGG 3757 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TCCCTTCTCCCCCATGGACCAGTAGGCCGTTTTTTTGTTCGACAGACTGGTCTCTCTTTT 3817 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TTTTTCTCATAGAATCATAGAGTTTGGTATACATAATGCAGCTTGAAAGAAAGAGGTCAC 3877 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 ACAGTATTTTTTTACTGTAGGTGTAGGGTTGATGTACTTTTTGTTAGCGTCTGTTTTTTG 3937 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 TCCCCTGTGGGTGTTACCAAATTTTGTAACTCCGCATTACGTTGAATGAAATAAAGAAGT 3997 consensus_8819#1 ------------------------------------------------------------ consensus_8819#0 GATCCAGGAAAAAAAAAGA 4016 consensus_8819#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||