These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 801 fasta sequence [CAAAGGCCAAGAAGCCCTAGCCTAGCCATGGTCGGTGGAGGCCGCCGGCGACAGTGACCGGCGAGGGCGAGGCGGTGCCGGC-GGTGGTGGGGAGAGAGATGTCGGTGAGGATAAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGAAGGAGGCGCTGGACGCGGACATCCAGGACCGCATCATGAAGGAGCGGGAGATGCAGAGCTACATCGAGGAGCGCGAGCGCGAGGTCGCCGAGCGGGAGGCCGCGTGGAAGGCCGAGCTATCCCGCCGCGAGGCAGA-AATTGCGCGACAAGAAGCAAGGCTGAAAATTGAAAGGGAGAACTTGGAGAAAGAAAAGAGTGTCCTCATGGGAACTGCTTCAAGCCAGGATAACCAAGACGGGGCCCTGGAAAT-CACAGTCAGTGGTGAGAAATACAGGTGCCTTCGCTTCTCCAAGGCAAAGAAGTGAGATATGGGCTACAGAAGTTGACAAGAATAATCGTGGATGGTACACCAATAGTAGCATTTTTTAGCCTTAGATGTGATTCAAGCTTGGGTGCTTCATGAAATCCTGCAGTGTCCAAAAATGAGGAAAGATACTCCTCTCTTTTTATGGTGTAAGGTAGCTACCAGGCAGTGTAGTCTCTGCAGCCATCTGATTCCTCTTAATCGAATCATTGAGCATCAAAGGTGATCTGAGCCTGCCATTTGCGTGTCTTGGCATGTAGTAACATGGACTTATATTAGATCTAGCTTATGCCACAAATGGCTTCATGGCAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK063264 [CAAAGGCCAAGAAGCCCTAGCCTAGCCATGGTCGGTGGAGGCCGCCGGCGACAGTGACCGGCGAGGGCGAGGCGGTGCCGGC GGTGGTGGGGAGAGAGATGTCGGTGAGGATAAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGAAGGAGGCGCTGGACGCGGACATCCAGGACCGCATCATGAAGGAGCGGGAGATGCAGAGCTACATCGAGGAGCGCGAGCGCGAGGTCGCCGAGCGGGAGGCCGCGTGGAAGGCCGAGCTATCCCGCCGCGAGGCAGA AATTGCGCGACAAGAAGCAAGGCTGAAAATTGAAAGGGAGAACTTGGAGAAAGAAAAGAGTGTCCTCATGGGAACTGCTTCAAGCCAGGATAACCAAGACGGGGCCCTGGAAAT CACAGTCAGTGGTGAGAAATACAGGTGCCTTCGCTTCTCCAAGGCAAAGAAGTGAGATATGGGCTACAGAAGTTGACAAGAATAATCGTGGATGGTACACCAATAGTAGCATTTTTTAGCCTTAGATGTGATTCAAGCTTGGGTGCTTCATGAAATCCTGCAGTGTCCAAAAATGAGGAAAGATACTCCTCTCTTTTTATGGTGTAAGGTAGCTACCAGGCAGTGTAGTCTCTGCAGCCATCTGATTCCTCTTAATCGAATCATTGAGCATCAAAGGTGATCTGAGCCTGCCATTTGCGTGTCTTGGCATGTAGTAACATGGACTTATATTAGATCTAGCTTATGCCACAAATGGCTTCATGGCAACTT ] [+] EMBL C97248 [ GCCCTAGCCTAGCCATNGTCGGTGGAGGCCGCC GCGACAGTNACCGGCGAGGGCGAGGCGGTG CGNCNGGTGGTGGGGAGAGAGATGTCGGTGAGGATAAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGAAGGAGGCGCTGGACG GGACATCCAGGACCGCATCATGAAGGAGCGGGAGATNCAGAGCTACATCGAGGAGCGCGNNCANG NGTCNCCGAGCNGGAGGCCCCGTGGAAGGCCGAGCTATCCCNCCGCGA CAGAGAATTGCGCGACAAGAAGCAAGGCTGAAAATTNAAAGGGAGAACTTTGAGAAAGAAAAGA ] [+] EMBL C97249 [ TTC AGCCCGGNTACCCAAGAC GGGCCCTGGAAATCCCCAGTCAGTGGTGAGAAATACAGGTGCCTTCGCTTCTCCAAGGCAAAGAAGTGAGATATGGGCTACAGAAGTTGACAAGAATAATCGTGGATGGTACACCAATAGTAGCATTTTTTAGCCTTAGATGTGATTCAAGCTTGGGTGCTTCATGAAATCCTGCAGTGTCCAAAAATGAGGAAAGATACTCCTCTCTTTTTATGGTGTAAGGTAGCTACCAGGCAGTGTAGTCTCTGCAGCCATCTGATTCCTCTTAATCGAATCATTGAGCATCAAAGGTGATCTGAGCCTGCCATTTGCGTGTCTTGGCATGTAGTAACATGGACTTATATTAGATCTAGCTTATGCCACAAATGGCTTCATGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 619 fasta sequence [TGGGCTCTCTCCCACGACGAAACGAGCGGCCCACGAAAATTTCGCCGCGCCGCGGCCGCATCGGAGCCCTAGCCCAGCCGCCGGAGTCCGGCGCCAGCGGCGGCGAGGCGGCGAAGTGCGGGGGAGGGAGATGTCGGTGCGGATCAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGCAGGAGGCGCTGGACGCGGACATCCAGGATCGCGTCATGAAGGAGCGGGAGATGCAGAGCTACATCCAGGAGCGGGAGCGCGAGGTCGCCGAGCGGGAGGCCGCCTGGAAGGCCGAGCTCTCCCGCCGCGAGGCTGAGATTGCGCGGCAAGAGGCAAGGCTGAAGATGGAAAAGGAGAACTTAGAGAAGGAAAAGAGCGTGCTCATGGGCACTGCTTCGAATCA-GGACAACCAAGACGGTGCCCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAAATGAGATATGAACTTAGGCATCGAGAAGTAGTTGTGTAAGACAGATTCATGGTAATGGTAAAACCTTATTTTGTTTCAAATTGGATTCTTTTGTACAGGGAATTCTGAAACGTGCGTAAACTCAGTAAAATATCCATAG] [+] EMBL AK111478 [TGGGCTCTCTCCCACGACGAAACGAGCGGCCCACGAAAATTTCGCCGCGCCGCGGCCGCATCGGAGCCCTAGCCCAGCCGCCGGAGTCCGGCGCCAGCGGCGGCGAGGCGGCGAAGTGCGGGGGAGGGAGATGTCGGTGCGGATCAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGCAGGAGGCGCTGGACGCGGACATCCAGGATCGCGTCATGAAGGAGCGGGAGATGCAGAGCTACATCCAGGAGCGGGAGCGCGAGGTCGCCGAGCGGGAGGCCGCCTGGAAGGCCGAGCTCTCCCGCCGCGAGGCTGAGATTGCGCGGCAAGAGGCAAGGCTGAAGATGGAAAAGGAGAACTTAGAGAAGGAAAAGAGCGTGCTCATGGGCACTGCTTCGAATCA GGACAACCAAGACGGTGCCCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAAATGAGATATGAACTTAGGCATCGAGAAGTAGTTGTGTAAGACAGATTCATGGTAATGGTAAAACCTTATTTTGTTTCAAATTGGATTCTTTTGTACAGGGAATTCTGAAACGTGCGTAAACTCAGTAAAATATCCATAG] [+] EMBL C91891 [ AGCCCAGCCGCCGGAGTCCGGCGCCA CGGCGGCGAGGCGGCGAAGTGCGGGGGAGGGAGATGTCGGTGCGGATCAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGCAGGAGGCGCTGGACGCGGACATCCAGGATCGCGTCATGAAGGAGCGGGAGATGCAGAGCTACATCCAGGAGCGGGAGCGCGAGGTCGCCGAGCGGGAGGCCGCCTGGAAGGCCGAGCTCTCCCGCCGCGAGGTTGAGATTGCGCGGCAAGAGGCAAGGCTGAAGATGGAAAAGGAGAACTTAGAGAAGGAAAAGAGCGTGCTCATGGGCACTGCTTCGAATCAGGGACAACCAAGACGGTGCCCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAAATGAGATATGAACTTAGGCATCGAGAAGTAG ] [+] EMBL CA763834 [ ACAACCAAGACGGTGCCCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAAATGAGATATGAACTTAGGCATCGAGAAGTAGTTGTGTAAGACAGATTCATGGTAATGGTAAAACCTTATTTTGTTTCAAATTGGATTCTTTTGTACAGGGAATTCTGAAACGTGCGTAAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8820#0 ------------------------CAAAGGCCAAGAAGCCCTAGCCTAGCCATGGTCG-G 35 consensus_8820#1 TGGGCTCTCTCCCACGACGAAACGAGCGGCCCACGAAAATTTCGCCGCGCCGCGGCCGCA 60 * *** *** * *** *** ** ** consensus_8820#0 TGGAGGCC---GCC--GGCGACAGTGACCGGCGAGGGCGAGGCGGTGCCGGCG--GTGGT 88 consensus_8820#1 TCGGAGCCCTAGCCCAGCCGCCGGAGTCCGGCGCCAGCGGCGGCGAGGCGGCGAAGTGCG 120 * * *** *** * ** * * * ****** *** * * * ***** *** consensus_8820#0 GGGGAGAGAGATGTCGGTGAGGATAAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGAA 148 consensus_8820#1 GGGGAGGGAGATGTCGGTGCGGATCAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGCA 180 ****** ************ **** ********************************* * consensus_8820#0 GGAGGCGCTGGACGCGGACATCCAGGACCGCATCATGAAGGAGCGGGAGATGCAGAGCTA 208 consensus_8820#1 GGAGGCGCTGGACGCGGACATCCAGGATCGCGTCATGAAGGAGCGGGAGATGCAGAGCTA 240 *************************** *** **************************** consensus_8820#0 CATCGAGGAGCGCGAGCGCGAGGTCGCCGAGCGGGAGGCCGCGTGGAAGGCCGAGCTATC 268 consensus_8820#1 CATCCAGGAGCGGGAGCGCGAGGTCGCCGAGCGGGAGGCCGCCTGGAAGGCCGAGCTCTC 300 **** ******* ***************************** ************** ** consensus_8820#0 CCGCCGCGAGGCAGAAATTGCGCGACAAGAAGCAAGGCTGAAAATTGAAAGGGAGAACTT 328 consensus_8820#1 CCGCCGCGAGGCTGAGATTGCGCGGCAAGAGGCAAGGCTGAAGATGGAAAAGGAGAACTT 360 ************ ** ******** ***** *********** ** **** ********* consensus_8820#0 GGAGAAAGAAAAGAGTGTCCTCATGGGAACTGCTTCAAGCCAGGATAACCAAGACGGGGC 388 consensus_8820#1 AGAGAAGGAAAAGAGCGTGCTCATGGGCACTGCTTCGAATCAGGACAACCAAGACGGTGC 420 ***** ******** ** ******** ******** * ***** *********** ** consensus_8820#0 CCTGGAAATCACAGTCAGTGGTGAGAAATACAGGTGCCTTCGCTTCTCCAAGGCAAAGAA 448 consensus_8820#1 CCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAA 480 *** ** ***** ** ** ***** ** ************** ***** *********** consensus_8820#0 GTGAGATATGGGCTACAGAAGTTGACAAGAATAATCGTGGATGGTACACCAATAGTAGCA 508 consensus_8820#1 ATGAGATATGAACT-TAGGCATCGAGAAG--TAGTTGTGTAAGACAGATTCATGGTA--A 535 ********* ** ** * ** *** ** * *** * * * * ** *** * consensus_8820#0 TTTTTTAGCCTTAGATGTGATTCAAGCTTGGGTGCTTCAT----GAAATCCTGCAGTGTC 564 consensus_8820#1 TGGTAAAACCTTAT-TTTGTTTCAAATTGGATTCTTTTGTACAGGGAATTCTGAAACGTG 594 * * * ***** * ** ***** * * * ** * * *** *** * ** consensus_8820#0 CAAAAATGAGGAAAGATACTCCTCTCTTTTTATGGTGTAAGGTAGCTACCAGGCAGTGTA 624 consensus_8820#1 CGTAAACTCAGTAAAATATCCATAG----------------------------------- 619 * *** * ** *** * * consensus_8820#0 GTCTCTGCAGCCATCTGATTCCTCTTAATCGAATCATTGAGCATCAAAGGTGATCTGAGC 684 consensus_8820#1 ------------------------------------------------------------ consensus_8820#0 CTGCCATTTGCGTGTCTTGGCATGTAGTAACATGGACTTATATTAGATCTAGCTTATGCC 744 consensus_8820#1 ------------------------------------------------------------ consensus_8820#0 ACAAATGGCTTCATGGCAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 801 consensus_8820#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||