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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1674 fasta sequence
[CGGCCGCTCGCCGATCACACGCTGACGCGCACACACCGGCGATTTCTCAGCCGCAATCGCCATGGCCACCGCCACCGCCACCTCCCTCGCCTCCTCCGCCGCGCACCGCCGCCTCCCGCCCTCGCGCTCAGCCGCTAGCTCCATCCTGAGAGCCCCCAACCGGGGCCGCCTCTGCCCCGGCTCCCCGTCGGTGCTCCGCGCGTCGTCCTCGTCTCCGTCGTCTCCCCAGCCCACCGCCGGCGGTGATGAGGGGGAGGAGGAGGAGGAGGGGCGGAGGCTGTCGAAGCAGTCGTCGTGGGAGGCGAAGGACTCCGAGGGGGATGACTACCTCTACCGCCTCGGGAAGGAGGCCGACAACATGAACATCGCCGTCGGCGCGCGGAGCGGCATCGTCGACGACCTCTTCGTCGGCAACTTCCTCGGCAAAGACTCGGATATTGTGTTCGATTACCGGCAGAAAGCGACCAGGACGTTTGAGTACCTGCAAGGAGATCATTACATCGCACCCCTCTTCCTTGATAAAGTTGCATGTCATATTGTGAAGAACTACCTTGCACATATTCTTACTATCAAGATTCCCCTTATACTTGGAATCTGGGGTGGAAAAGGCCAAGGGAAAACATTCCAGACTGAACTTATATTTAGAGCAATGGGTGTTGAACCTGTTATTATGTCTGCTGGAGAACTAGAATCTGAGAAAGCAGGAGAACCTGGGAGGCTTATACGTGACCGATACAGGACGGCTTCTCAAGTAATTCAAAACCAAGGGAAAATGAGTGTTTTGATGATCAATGACCTAGATGCTGGTGTTGGAAGATTTGGTAACACACAAATGACAGTAAATAATCAAATTGTGATTGGAACTTTAATGAACTTGGCGGATAATCCAACCAGGGTTAGCATTGGCCAGAAATGGAGAGAATCTGATGTAACACACAGAGTGCCAATAATAGTTACCGGAAATGATTTTTCGACACTGTATGCTCCCTTGATTCGTGATGGGAGGATGGAAAAGTTCTATTGGCAGCCTGGCCGTGAAGATATAATTAACATTGTTCACCGCATGTATATAAAGGATGGTTTGTCTTTCGAGGATGTATCAAAAGTTGTAGACACTTTTCCAAACCAAGCTCTGGACTTTTATGGAGCTTTGAGATCCAGGACATACGATCGGGCAATCTTGCAGTGGGTAGAAGAGATTGGTGGTCATGAACAACTAAATGAAAAGCTTCTCAAGCGAAAGAAAGGAGAGGAGCTTCCAACATTTATTCCTCCAAAGACCACTGTAGATGCGTTGATTGAATCTGGGGACTCTCTGGTGAAAGAGCAAGAACTGATAATGAATTCGAAACTGTCAAAAGAATATATGAAGAATTTAGATGATTAGTTCAAAACAAAAGGTCTAATAGAGAAAGTACTCGAGGTGCCTATCTCAACCCGATTTTGTATATTTTTGCATCTCTGAAAACTGCACCTTTCTTTCTCTCTCTCTTTGGTGCCCCTGCATCCTACATTCTACAGAACAGTTGCATGTGCAAGTATACGATAGTGTATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGTGTTTTATGTATTTTAGATATCTTTATATAATCGTTTGTACAATGGTTTGCAACTCTGAACTATATATAATGAACTTCATA]
[+] EMBL AK067399 [CGGCCGCTCGCCGATCACACGCTGACGCGCACACACCGGCGATTTCTCAGCCGCAATCGCCATGGCCACCGCCACCGCCACCTCCCTCGCCTCCTCCGCCGCGCACCGCCGCCTCCCGCCCTCGCGCTCAGCCGCTAGCTCCATCCTGAGAGCCCCCAACCGGGGCCGCCTCTGCCCCGGCTCCCCGTCGGTGCTCCGCGCGTCGTCCTCGTCTCCGTCGTCTCCCCAGCCCACCGCCGGCGGTGATGAGGGGGAGGAGGAGGAGGAGGGGCGGAGGCTGTCGAAGCAGTCGTCGTGGGAGGCGAAGGACTCCGAGGGGGATGACTACCTCTACCGCCTCGGGAAGGAGGCCGACAACATGAACATCGCCGTCGGCGCGCGGAGCGGCATCGTCGACGACCTCTTCGTCGGCAACTTCCTCGGCAAAGACTCGGATATTGTGTTCGATTACCGGCAGAAAGCGACCAGGACGTTTGAGTACCTGCAAGGAGATCATTACATCGCACCCCTCTTCCTTGATAAAGTTGCATGTCATATTGTGAAGAACTACCTTGCACATATTCTTACTATCAAGATTCCCCTTATACTTGGAATCTGGGGTGGAAAAGGCCAAGGGAAAACATTCCAGACTGAACTTATATTTAGAGCAATGGGTGTTGAACCTGTTATTATGTCTGCTGGAGAACTAGAATCTGAGAAAGCAGGAGAACCTGGGAGGCTTATACGTGACCGATACAGGACGGCTTCTCAAGTAATTCAAAACCAAGGGAAAATGAGTGTTTTGATGATCAATGACCTAGATGCTGGTGTTGGAAGATTTGGTAACACACAAATGACAGTAAATAATCAAATTGTGATTGGAACTTTAATGAACTTGGCGGATAATCCAACCAGGGTTAGCATTGGCCAGAAATGGAGAGAATCTGATGTAACACACAGAGTGCCAATAATAGTTACCGGAAATGATTTTTCGACACTGTATGCTCCCTTGATTCGTGATGGGAGGATGGAAAAGTTCTATTGGCAGCCTGGCCGTGAAGATATAATTAACATTGTTCACCGCATGTATATAAAGGATGGTTTGTCTTTCGAGGATGTATCAAAAGTTGTAGACACTTTTCCAAACCAAGCTCTGGACTTTTATGGAGCTTTGAGATCCAGGACATACGATCGGGCAATCTTGCAGTGGGTAGAAGAGATTGGTGGTCATGAACAACTAAATGAAAAGCTTCTCAAGCGAAAGAAAGGAGAGGAGCTTCCAACATTTATTCCTCCAAAGACCACTGTAGATGCGTTGATTGAATCTGGGGACTCTCTGGTGAAAGAGCAAGAACTGATAATGAATTCGAAACTGTCAAAAGAATATATGAAGAATTTAGATGATTAGTTCAAAACAAAAGGTCTAATAGAGAAAGTACTCGAGGTGCCTATCTCAACCCGATTTTGTATATTTTTGCATCTCTGAAAACTGCACCTTTCTTTCTCTCTCTCTTTGGTGCCCCTGCATCCTACATTCTACAGAACAGTTGCATGTGCAAGTATACGATAGTGTATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGTGTTTTATGTATTTTAGATATCTTTATATAATCGTTTGTACAATGGTTTGCAACTCTGAACTATATATAATGAACTTCATA]
consensusID : consensus_883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[TATGGGATAGATAGCTTTGGTATCAGCCNTGTCTAAGGTATACACGTGTCTCACGGAATTCCCGGGTGCAGACACACACAGGCAGTGCACAGCACACAACAGCAGTGCCGAGCTCGGAGGTGGCACTAATGCTGCAAAACCCAGATGTGTCTGGTAATGATTGTGTGTGGCAATGTGTGCTGCGTGGAAAAACATGGCAAACCAGTGTGCTGTGTGCTGCTCTGCTGCTTGTGGTGGCACCCTGGCAATGCACTGACAATGTGCTGACCAGGAACCACGTTGCATGTGCAAGTATACNATAGTGTATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGAAAAAAAAAA]
[+] EMBL BM420376 [TATGGGATAGATAGCTTTGGTATCAGCCNTGTCTAAGGTATACACGTGTCTCACGGAATTCCCGGGTGCAGACACACACAGGCAGTGCACAGCACACAACAGCAGTGCCGAGCTCGGAGGTGGCACTAATGCTGCAAAACCCAGATGTGTCTGGTAATGATTGTGTGTGGCAATGTGTGCTGCGTGGAAAAACATGGCAAACCAGTGTGCTGTGTGCTGCTCTGCTGCTTGTGGTGGCACCCTGGCAATGCACTGACAATGTGCTGACCAGGAACCACGTTGCATGTGCAAGTATACNATAGTGTATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_883#0 CGGCCGCTCGCCGATCACACGCTGACGCGCACACACCGGCGATTTCTCAGCCGCAATCGC 60
consensus_883#1 ------------------------------------------------------------
consensus_883#0 CATGGCCACCGCCACCGCCACCTCCCTCGCCTCCTCCGCCGCGCACCGCCGCCTCCCGCC 120
consensus_883#1 ------------------------------------------------------------
consensus_883#0 CTCGCGCTCAGCCGCTAGCTCCATCCTGAGAGCCCCCAACCGGGGCCGCCTCTGCCCCGG 180
consensus_883#1 ------------------------------------------------------------
consensus_883#0 CTCCCCGTCGGTGCTCCGCGCGTCGTCCTCGTCTCCGTCGTCTCCCCAGCCCACCGCCGG 240
consensus_883#1 ------------------------------------------------------------
consensus_883#0 CGGTGATGAGGGGGAGGAGGAGGAGGAGGGGCGGAGGCTGTCGAAGCAGTCGTCGTGGGA 300
consensus_883#1 ------------------------------------------------------------
consensus_883#0 GGCGAAGGACTCCGAGGGGGATGACTACCTCTACCGCCTCGGGAAGGAGGCCGACAACAT 360
consensus_883#1 ------------------------------------------------------------
consensus_883#0 GAACATCGCCGTCGGCGCGCGGAGCGGCATCGTCGACGACCTCTTCGTCGGCAACTTCCT 420
consensus_883#1 ------------------------------------------------------------
consensus_883#0 CGGCAAAGACTCGGATATTGTGTTCGATTACCGGCAGAAAGCGACCAGGACGTTTGAGTA 480
consensus_883#1 ------------------------------------------------------------
consensus_883#0 CCTGCAAGGAGATCATTACATCGCACCCCTCTTCCTTGATAAAGTTGCATGTCATATTGT 540
consensus_883#1 ------------------------------------------------------------
consensus_883#0 GAAGAACTACCTTGCACATATTCTTACTATCAAGATTCCCCTTATACTTGGAATCTGGGG 600
consensus_883#1 ------------------------------------------------------------
consensus_883#0 TGGAAAAGGCCAAGGGAAAACATTCCAGACTGAACTTATATTTAGAGCAATGGGTGTTGA 660
consensus_883#1 ------------------------------------------------------------
consensus_883#0 ACCTGTTATTATGTCTGCTGGAGAACTAGAATCTGAGAAAGCAGGAGAACCTGGGAGGCT 720
consensus_883#1 ------------------------------------------------------------
consensus_883#0 TATACGTGACCGATACAGGACGGCTTCTCAAGTAATTCAAAACCAAGGGAAAATGAGTGT 780
consensus_883#1 ------------------------------------------------------------
consensus_883#0 TTTGATGATCAATGACCTAGATGCTGGTGTTGGAAGATTTGGTAACACACAAATGACAGT 840
consensus_883#1 ------------------------------------------------------------
consensus_883#0 AAATAATCAAATTGTGATTGGAACTTTAATGAACTTGGCGGATAATCCAACCAGGGTTAG 900
consensus_883#1 ------------------------------------------------------------
consensus_883#0 CATTGGCCAGAAATGGAGAGAATCTGATGTAACACACAGAGTGCCAATAATAGTTACCGG 960
consensus_883#1 ------------------------------------------------------------
consensus_883#0 AAATGATTTTTCGACACTGTATGCTCCCTTGATTCGTGATGGGAGGATGGAAAAGTTCTA 1020
consensus_883#1 ------------------------------------------------------------
consensus_883#0 TTGGCAGCCTGGCCGTGAAGATATAATTAACATTGTTCACCGCATGTATATAAAGGATGG 1080
consensus_883#1 ------------------------------------------------------------
consensus_883#0 TTTGTCTTTCGAGGATGTATCAAAAGTTGTAGACACTTTTCCAAACCAAGCTCTGGACTT 1140
consensus_883#1 ------------------------------------------------------------
consensus_883#0 TTATGGAGCTTTGAGATCCAGGACATACGATCGGGCAATCTTGCAGTGGGTAGAAGAGAT 1200
consensus_883#1 ------------------------------------------------------------
consensus_883#0 TGGTGGTCATGAACAACTAAATGAAAAGCTTCTCAAGCGAAAGAAAGGAGAGGAGCTTCC 1260
consensus_883#1 ------------------------------------------TATGGGATAGATAGCTTT 18
* *** ** *
consensus_883#0 AACATTTATTCCTCCAAAGACCACTGTAGATGCGTTGATTGAATCTGGGGACTCTCTGGT 1320
consensus_883#1 GGTATCAGCCNTGTCTAAGG----TATACACGTGTC-------TCACGGAATTCCCGGGT 67
** * *** * ** * * ** ** ** * ** * ***
consensus_883#0 GAAAGAGCAAGAACTGATAATGAATTCGAAACTGTCAAAAGAATATATGAAGAATTTAGA 1380
consensus_883#1 GCAG--ACACACACAGGCAGTGCACAGCACACAACAGCAGTGCCGAGCTCGGAGGTGGCA 125
* * ** ** * * ** * * ** * ** * *
consensus_883#0 TGATTAGTTCAAAACAAAAG---GTCTAATAGAGAAAGTACTCG---AGGTGCCTATCTC 1434
consensus_883#1 CTAATGCTGCAAAACCCAGATGTGTCTGGTAATGATTGTGTGTGGCAATGTGTGCTGCGT 185
* * * ****** * **** ** ** ** * * *** *
consensus_883#0 AACCCGATTTTGTATATTTTTGCATCTCTGAAAACTGCACCTTTCTTTCTCTCTCTCTT- 1493
consensus_883#1 GGAAAAACATGGCAAACCAGTGTGCTGTGTGCTGCTCTGCTGCTTGTGGTGGCACCCTGG 245
* * * * * ** ** * * * * * * **
consensus_883#0 TGGTGCCCCTGCATCCTACATTCTACAGAACA-GTTGCATGTGCAAGTATACGATAGTGT 1552
consensus_883#1 CAATGCACTGACAATGTGCTGACCAGGAACCACGTTGCATGTGCAAGTATACNATAGTGT 305
*** * ** * * * * * ** ******************* *******
consensus_883#0 ATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGTGTTTTATGTATTTTAGAT 1612
consensus_883#1 ATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGAAAAAAAAAA--------- 356
***************************************** *
consensus_883#0 ATCTTTATATAATCGTTTGTACAATGGTTTGCAACTCTGAACTATATATAATGAACTTCA 1672
consensus_883#1 ------------------------------------------------------------
consensus_883#0 TA 1674
consensus_883#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||