cluster # 8833

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Oryza sativa
cluster # 8833 cluster # 8833 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8833#0 length = 608 sequences # 4

consensus_8833#1 length = 363 sequences # 1
consensus_8833#2 length = 349 sequences # 1

consensusID : consensus_8833#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 608
fasta sequence

                              [GAGTAGAAAGAGGTCAAACCCATACAACCTTTGTGGTTGCATCTGACAGGCCGAATCCTCTCCGGATCCCGGTCCATCTCCACCGTCCATTCTCTCCCATCGCTCCACGCTCCCTGCGCGGCTGCGCCTCCTCTCCTCTCCTCTCCTCGCCGCCACCGCCGCGGCGCCGCCGCCGGCCTAGACT-CCCCCCCCCTCTCTCTCTCCCTCTCCCTCTCTCTCCCATCTCCTCTCCGGTCGAGCGCGCGTGCGGCCTCCCAATCCCGACGCCGCCACCAGCCCAAACGCACACGCAGACACCTCGTCCGGCTCGGAGACTCAGCCCCGGCTCTCGCATCAGGCGGAGGCGGGTGTTGCGGAGCTTGATCCGTTGCTTTTGGCTATTCCGCTCCTCACCCGGTGCCGGGAAATCGGCGAGTTGTCCCCCCCTTGTTCTTCTTGCTATCCGGGTCCGTGTGATGAACGGCGGCAAGAAGTTCGGCGGCGGCCGCCCGCCGACGGGGACTCCGTCGCTGGCCTGGTCTTCCGTCGTCG-TGGTCGTCTCCCTGCTTGCTGGAGCGTCCATCGTGCACAACATCTACAAGCCCAACATGACCATTCCACCGGTGGAG]

[+] EMBL CF292074             [GAGTAGAAAGAGGTCAAACCCATACAACCTTTGTGGTTGCATCTGACAGGCCGAATCCTCTCCGGATCCCGGTCCATCTCCACCGTCCATTCTCTCCCATCGCTCCACGCTCCCTGCGCGGCTGCGCCTCCTCTCCTCTCCTCTCCTCGCCGCCACCGCCGCGGCGCCGCCGCCGGCCTAGACT CCCCCCCCCTCTCTCTCTCCCTCTCCCTCTCTCTCCCATCTCCTCTCCGGTCGAGCGCGCGTGCGGCCTCCCAATCCCGACGCCGCCACCAGCCCAAACGCACACGCAGACACCTCGTCCGGCTCGGAGACTCAGCCCCGGCTCTCGCATCAGGCGGAGGCGGGTGTTGCGGAGCTTGATCCGTTGCTTTTGGCTATTCCGCTCCTCACCCGGTGCCGGGAAATCGGCGAGTTGTCCCCCCCTTGTTCTTCTTGCTATCCGGGTCCGTGTGATGAACGGCGGCAAGAAGTTCGGCGGCGGCCGCCCGCCGACGGGGACTCCGTCGCTGGCCTGGTCTTCCGTCGTCGTTGGTCGTCTCCCTGCTTGCTGGAGCGTCCATCGTGCACAACATCTACAAG                           ]
[+] EMBL CF297257             [                                                                                         TTCTCTCCCATCGCTCCACGCTCCCTGCGCGGCTGCGCCTCCTCTCCTCTCCTCTCCTCGCCGCCACCGCCGCGGCGCCGCCGCCGGCTTAGGCTCCCCCCCCCCTCTCTCTCTCCCTCTCCCTCTCTCTCCCATCTCCTCTCCGGTCGAGCGCGCGTGCGGCCTCCCAATCCCGACGCCGCCGCCAGCCCAAACGCACACGCAGACACCTCGTCCGGCTCGGAGACTCAGCCCCGGCTCTCGCATCAGGCGGAGGCGGGTGTTGCGGAGCTTGATCCGTTGCTTTTGGCTATTCCGCTCCTCACCCGGTGCCGGGAAATCGGCGAGTTGTCCCCCCCTTGTTCTTCTTGCTATCCGGGTCCGTGTGATGAACGGCGGCAAGAAGTTCGGCGGCGGCCGCCCGCCGACGGGGACTCCGTCGCTGGCCTGGTCTTCCGTCGTCG TGGTCGTCTCCCTGCTGGCTGGGGCGTCCATCGTGCACAACATCTACAAGCCCAACATGACCATTCCACCGGTGGAG]
[+] EMBL CF290902             [                                                                                                          ACGCTCCCTGCGCGGCTGCGCCTCCTCTCCTCTCCTCTCCTCGCCGCCACCGCCGCGGCGCCGCCGCCGGCCTAGACT CCCCCCCCCTCTCTCTCTCCCTCTCCCTCTCTCTCCCATCTCCTCTCCGGTCGAGCGCGCGTGCGGCCTCCCAATCCCGACGCCGCCACCAGCCCAAACGCACACGCAGACACCTCGTCCGGCTCGGAGACTCAGCCCCGGCTCTCGCATCAGGCGGAGGCGGGTGTTGCGGAGCTTGATCCGTTGCTTTTGGCTATTCCGCTCCTCACCCGGTGCCGGGAAATCGGCGAGTTGTCCCCCCCTTGTTCTTCTTGCTATCCGGGTCCGTGTGATGAACGGCGGCAAGAAGTTCGGCGGCGGCCGCCCGCCGACGGGGACTCCGTCGCTGGCCTGGTCTTCCGTCGTCG TGGTCGTCTCCCTGCTTGCTGGAGCGTCCATCGTGCACAACA                                   ]
[+] EMBL CA753283             [                                                                                                                                                                                                                                                         GGCCTCCCAATCCCGACGCCGCCACCAGCCCAAACGCACACGCAGACACCTCGTCCGGCTCGGAGACTCAGCCCCGGCTCTCGCATCAGGCGGAGGCGGGTGTTGCGGAGCTTGATCCGTTGCTTTTGGCTACTCCGCTCCTCACCCGGTGCCGGGAAATCGGCGAGTTGTCCCCCCCTTGTTCTTCTTGCTATCCGGGTCCGTGTGATGAACGGCGGCAAGAAGTTCGGCGGCGG                                                                                                                             ]




>consensus_8833#0
GAGTAGAAAGAGGTCAAACCCATACAACCTTTGTGGTTGCATCTGACAGGCCGAATCCTC
TCCGGATCCCGGTCCATCTCCACCGTCCATTCTCTCCCATCGCTCCACGCTCCCTGCGCG
GCTGCGCCTCCTCTCCTCTCCTCTCCTCGCCGCCACCGCCGCGGCGCCGCCGCCGGCCTA
GACTCCCCCCCCCTCTCTCTCTCCCTCTCCCTCTCTCTCCCATCTCCTCTCCGGTCGAGC
GCGCGTGCGGCCTCCCAATCCCGACGCCGCCACCAGCCCAAACGCACACGCAGACACCTC
GTCCGGCTCGGAGACTCAGCCCCGGCTCTCGCATCAGGCGGAGGCGGGTGTTGCGGAGCT
TGATCCGTTGCTTTTGGCTATTCCGCTCCTCACCCGGTGCCGGGAAATCGGCGAGTTGTC
CCCCCCTTGTTCTTCTTGCTATCCGGGTCCGTGTGATGAACGGCGGCAAGAAGTTCGGCG
GCGGCCGCCCGCCGACGGGGACTCCGTCGCTGGCCTGGTCTTCCGTCGTCGTGGTCGTCT
CCCTGCTTGCTGGAGCGTCCATCGTGCACAACATCTACAAGCCCAACATGACCATTCCAC
CGGTGGAG

consensusID : consensus_8833#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGGCCTCATCCCCTTTTTTTAGTTGCATTCCTTAAAAACTGGGTTCATAATGTTTTGGGAAACAATCCCCAATTAACCAAGTCCTAAAATAAATAAAATGCCGGGCACCATTCTGCTAAAAAAATACTTAGCGAGCAATACTGCGGGCTTAATTTGGCTCTCAAAATTCTGACAAAATAAAACTACCGGGGGCCTTTTTTCACAAAAGGATGCTTTTCCCGAAAAAAAAACAAAACCTTTAACACTTTGAGCACAAACCTTTAAACTTGTTTAGCTTTGTTTGCCCCCATCCGGGCTCTCCACCGGGGGAATGGTC]

[+] EMBL CF290901             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGGCCTCATCCCCTTTTTTTAGTTGCATTCCTTAAAAACTGGGTTCATAATGTTTTGGGAAACAATCCCCAATTAACCAAGTCCTAAAATAAATAAAATGCCGGGCACCATTCTGCTAAAAAAATACTTAGCGAGCAATACTGCGGGCTTAATTTGGCTCTCAAAATTCTGACAAAATAAAACTACCGGGGGCCTTTTTTCACAAAAGGATGCTTTTCCCGAAAAAAAAACAAAACCTTTAACACTTTGAGCACAAACCTTTAAACTTGTTTAGCTTTGTTTGCCCCCATCCGGGCTCTCCACCGGGGGAATGGTC]




>consensus_8833#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGGCCTCATCCCC
TTTTTTTAGTTGCATTCCTTAAAAACTGGGTTCATAATGTTTTGGGAAACAATCCCCAAT
TAACCAAGTCCTAAAATAAATAAAATGCCGGGCACCATTCTGCTAAAAAAATACTTAGCG
AGCAATACTGCGGGCTTAATTTGGCTCTCAAAATTCTGACAAAATAAAACTACCGGGGGC
CTTTTTTCACAAAAGGATGCTTTTCCCGAAAAAAAAACAAAACCTTTAACACTTTGAGCA
CAAACCTTTAAACTTGTTTAGCTTTGTTTGCCCCCATCCGGGCTCTCCACCGGGGGAATG
GTC

consensusID : consensus_8833#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [TTTTTGGATAAAATTGCCTCATCCCCTTTCTCTAGTTGCATTCCTTCAAGACTGGGATCATAATGTTTTGGGAGACAATCACCAATTAACCAAGTACTAGAATAAATAAAATGCAGTGCAGCAGTCTGTTAAAAAAATACTTAGCGAGCAATACTGCAGGCTTAATTTGGCTCTCAAAATTCTGACAGAATAAGACTACCGTCGGCCTCATCTCACAAGAGGATGCATATACCGAGAAAGAAACGAAACCTCTAACACTCTGAGCACGAACCTTTGAACTTGTCTAGCTCTGCTTGCCCCCATCCGTGCTCTCCACCGGTGGAATGGTCATGTTGGGCTTGTAGATGTT]

[+] EMBL CF297256             [TTTTTGGATAAAATTGCCTCATCCCCTTTCTCTAGTTGCATTCCTTCAAGACTGGGATCATAATGTTTTGGGAGACAATCACCAATTAACCAAGTACTAGAATAAATAAAATGCAGTGCAGCAGTCTGTTAAAAAAATACTTAGCGAGCAATACTGCAGGCTTAATTTGGCTCTCAAAATTCTGACAGAATAAGACTACCGTCGGCCTCATCTCACAAGAGGATGCATATACCGAGAAAGAAACGAAACCTCTAACACTCTGAGCACGAACCTTTGAACTTGTCTAGCTCTGCTTGCCCCCATCCGTGCTCTCCACCGGTGGAATGGTCATGTTGGGCTTGTAGATGTT]




>consensus_8833#2
TTTTTGGATAAAATTGCCTCATCCCCTTTCTCTAGTTGCATTCCTTCAAGACTGGGATCA
TAATGTTTTGGGAGACAATCACCAATTAACCAAGTACTAGAATAAATAAAATGCAGTGCA
GCAGTCTGTTAAAAAAATACTTAGCGAGCAATACTGCAGGCTTAATTTGGCTCTCAAAAT
TCTGACAGAATAAGACTACCGTCGGCCTCATCTCACAAGAGGATGCATATACCGAGAAAG
AAACGAAACCTCTAACACTCTGAGCACGAACCTTTGAACTTGTCTAGCTCTGCTTGCCCC
CATCCGTGCTCTCCACCGGTGGAATGGTCATGTTGGGCTTGTAGATGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8833#1      ------------------------------------------------------------
consensus_8833#2      ------------------------------------------------------------
consensus_8833#0      GAGTAGAAAGAGGTCAAACCCATACAACCTTTGTGGTTGCATCTGACAGGCCGAATCCTC 60
                                                                                  

consensus_8833#1      ------------------------------------------------------------
consensus_8833#2      ------------------------------------------------------------
consensus_8833#0      TCCGGATCCCGGTCCATCTCCACCGTCCATTCTCTCCCATCGCTCCACGCTCCCTGCGCG 120
                                                                                  

consensus_8833#1      ------------------------------------------------------------
consensus_8833#2      ------------------------------------------------------------
consensus_8833#0      GCTGCGCCTCCTCTCCTCTCCTCTCCTCGCCGCCACCGCCGCGGCGCCGCCGCCGGCCTA 180
                                                                                  

consensus_8833#1      ------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAT 48
consensus_8833#2      ----------------------------------------------TTTTTGGATAAAAT 14
consensus_8833#0      GACTCCCCCCCCCTCTCTCTCTCCCTCTCCCTCTCTCTCCCATCTCCTCTCCGGTCGAGC 240
                                                                     * *    *  *  

consensus_8833#1      GGCCTCATCCCCTTTTTTTAGTTGCATTCCTTAAAAACTGGGTTCATAATGTTTTGGGAA 108
consensus_8833#2      TGCCTCATCCCCTTTCTCTAGTTGCATTCCTTCAAGACTGGGATCATAATGTTTTGGGAG 74
consensus_8833#0      GCGCGTGCGGCCTCCCAATCCCGACGCCGCCACCAGCCCAAACGCACA---CGCAGACAC 297
                         *      ***     *     *    *    *  *      ** *       *  * 

consensus_8833#1      ACAATCC--CCAATTAACCAAGTCCTAAAATAAATAAAATGCCGGGCACCATTCTGCTAA 166
consensus_8833#2      ACAATCA--CCAATTAACCAAGTACTAGAATAAATAAAATGCAGTGCAGCAGTCTGTTAA 132
consensus_8833#0      CTCGTCCGGCTCGGAGACTCAGCCCCGGCTCTCGCATCAGGCGGAGGCGGGTGTTGCGGA 357
                          **   *      **  **  *          *  * ** * *        **   *

consensus_8833#1      AAA-AATACTTAGCGAGCAA-TACTGCGGGCTTAATTTGGCTCTCAAAATTCTGACAAAA 224
consensus_8833#2      AAA-AATACTTAGCGAGCAA-TACTGCAGGCTTAATTTGGCTCTCAAAATTCTGACAGAA 190
consensus_8833#0      GCTTGATCCGTTGCTTTTGGCTATTCCGCTCCTCACCCGGTGCCGGGAAATC-GGCGAGT 416
                           ** * * **       ** * *   * * *   **  *    ** ** * *    

consensus_8833#1      TAAAACTACCGGGGGCCTTTTTTCACAAAAGGATGCTTTTCCCGAAAAAAAAACAAAACC 284
consensus_8833#2      TAAGACTACCGTCGGCCTCATCTCACAAGAGGATGCATATACCGAGAAAGAAACGAAACC 250
consensus_8833#0      TGTCCCCCCCTTGTTCTTCTTGCTATCCGGGTCCGTGTGATGAACGGCGGCAAGAAGTTC 476
                      *    *  **     * *  *   *     *   *  *             **  *   *

consensus_8833#1      TTTAACA-----CTTTGAGCACAAACCTTTAAACTTGTTTAGCTTTGTTTGCCCCCATCC 339
consensus_8833#2      TCTAACA-----CTCTGAGCACGAACCTTTGAACTTGTCTAGCTCTGCTTGCCCCCATCC 305
consensus_8833#0      GGCGGCGGCCGCCCGCCGACGGGGACTCCGTCGCTGGCCTGGTCTTCCGTCGTCGTGGTC 536
                           *      *      *    **       ** *  * *   *   *   *     *

consensus_8833#1      GGGCTCTCCACCGGGGGAATG---GTC--------------------------------- 363
consensus_8833#2      GTGCTCTCCACCGGTGGAATG---GTCATGTTGGGCTTGTAGATGTT------------- 349
consensus_8833#0      GTCTCCCTGCTTGCTGGAGCGTCCATCGTGCACAACATCTACAAGCCCAACATGACCATT 596
                      *    *      *  ***  *    **                                 

consensus_8833#1      ------------
consensus_8833#2      ------------
consensus_8833#0      CCACCGGTGGAG 608