cluster # 8843

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Oryza sativa
cluster # 8843 cluster # 8843 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8843#0 length = 925 sequences # 5

consensus_8843#1 length = 676 sequences # 1

consensusID : consensus_8843#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 925
fasta sequence

                              [GCGGTTGCTATGTCTAGTGAACCAATAGAACAGGAGCCTATTCTGCATCAGTCTCCTTCTCCAAATTGTGAAGTTTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCACGAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATCATTG-CTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTT-AATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATT---GGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAA-GGATGTAATGTGGCATATTATTAAGCTTAAA-TTTTATGTTGCTCCATC-TTCCGAGTCCTTGCTACTGAAATGCATAAGAACAA-AGTGGAGG-AATTGGGAGGTGTAAC-TTAAAACGAAAACCCTTTGATTCTCATATAACTGAAGAGGAACGTCTTGCTGATTGTGATCCTCGTGTCCTAAAAGAACAGTGGCGATTCCTAGGGGCATTTTGGAATACCGAA]

[+] EMBL CA757908             [GCGGTTGCTATGTCTAGTGAACCAATAGAACAGGAGCCTATTCTGCATCAGTCTCCTTCTCCAAATTGTGAAGTTTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCACGAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGATATTGACAGAATCATTG CTGGTCTTTGCACTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTTCTATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATT   GGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCANTATCCTTG ACAATTCANGGTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTANCGCGTGATGGAATATTTGCACCTCTTACATATAANAAATGGAAAAGTTTTCCCAAGGAG ACAAGGGATGTTATGTGGCATATTATTAAGCTTAAATTTTTATGTTGCTCCATCTTTCCGAGTCCTTGCTACTGGAATGCGTAAGAACAAGAG GGAGGAAATGGGGAGGTGTTACTTTAAAACCAAAACCCTTTGA                                                                                              ]
[+] EMBL D43152               [                                                   TCTCCTTCTCCAAATTGTGAAGTTTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCACGAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATCATTG CTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB649548             [                                                                   GTGAAGCCTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCACGAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATCATTG CTGGGCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTT AATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATTGTAGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAA GGATGTAATGTGGCATATTATTAAGCTTAAA TTTTATGTTGCTCCATC TTCCGAGTCCTTGCTACTGAAATGCATAAAACCAA AGTGGAGG AATT GGAGGTGTAAC TTAAAACGAAA                                                                                                       ]
[+] EMBL CB649751             [                                                                   GTGAAGTTTTATTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCACGAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATCATTGACTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCGAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTT AATCATCTACTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATTGTAGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGGATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGGAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAA GGATGTAATGTGGCATATTATTAAGCTTAAA TTTTATGTTGCTCCATC TTCCGAGTCCTTGCTACTGAGATGCATAACAACAA AGTGGAGG AATTG                                                                                                                              ]
[-] EMBL CB673186             [                                                                                                                                                    GCATGTCTGACCCTCCAGACATTGACAGAATCATTG CTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGTGAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTT AATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATT   GGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAA GGATGTAATGTGGCATATTATTAAGCTTAAA TTTTATGTTGCTCCATC TTCCGAGTCCTTGCTACTGAAATGCATAAGAACAA AGTGGAGG AATT GGAGGTGTAAC TTAAAACGAAAACACTATGATTCTCATATAACTGAAGAGGAACGTCTTGCTGATTGTGATCCTCGTGTCCTAAAAGAACAGTGGCGATTCCTAGGGGCATTTTGGAATACCGAA]




>consensus_8843#0
GCGGTTGCTATGTCTAGTGAACCAATAGAACAGGAGCCTATTCTGCATCAGTCTCCTTCT
CCAAATTGTGAAGTTTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCAC
GAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATC
ATTGCTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGT
GAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAG
CGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAG
AAAAGATCTAATTCATTACTTAATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTT
GTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAAT
ATTGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGG
ACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGA
AAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCA
CCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAAGGATGTAATGTGGCAT
ATTATTAAGCTTAAATTTTATGTTGCTCCATCTTCCGAGTCCTTGCTACTGAAATGCATA
AGAACAAAGTGGAGGAATTGGGAGGTGTAACTTAAAACGAAAACCCTTTGATTCTCATAT
AACTGAAGAGGAACGTCTTGCTGATTGTGATCCTCGTGTCCTAAAAGAACAGTGGCGATT
CCTAGGGGCATTTTGGAATACCGAA

consensusID : consensus_8843#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [AGGGAACCAGATGACCCGGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTTAATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATTGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAAGGATGTAATGTGGCATATTATTAAGCTTAAATTTTATGTTGCTCCATCTTCCGAGTCCTTGCTACTGAAATGCATAAGAACAAAGTGGAGGAATTGGACACCCCACCTCCAGGATCTCGTCGGGTTCCTCGTCAGCTGCTGCCACCGCCATCGCCACGCGGCGGCGGCGGCGGCGCCATTGCCTTCAGCCCTCAGCGCAGTAGCGTCGG]

[-] EMBL CB673185             [AGGGAACCAGATGACCCGGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAGAAAAGATCTAATTCATTACTTAATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAATATTGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAAGGATGTAATGTGGCATATTATTAAGCTTAAATTTTATGTTGCTCCATCTTCCGAGTCCTTGCTACTGAAATGCATAAGAACAAAGTGGAGGAATTGGACACCCCACCTCCAGGATCTCGTCGGGTTCCTCGTCAGCTGCTGCCACCGCCATCGCCACGCGGCGGCGGCGGCGGCGCCATTGCCTTCAGCCCTCAGCGCAGTAGCGTCGG]




>consensus_8843#1
AGGGAACCAGATGACCCGGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCT
GAGCGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCA
AAGAAAAGATCTAATTCATTACTTAATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAA
TTTGTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAG
AATATTGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTG
TGGACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATT
GGAAAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTG
GCACCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAAGGATGTAATGTGG
CATATTATTAAGCTTAAATTTTATGTTGCTCCATCTTCCGAGTCCTTGCTACTGAAATGC
ATAAGAACAAAGTGGAGGAATTGGACACCCCACCTCCAGGATCTCGTCGGGTTCCTCGTC
AGCTGCTGCCACCGCCATCGCCACGCGGCGGCGGCGGCGGCGCCATTGCCTTCAGCCCTC
AGCGCAGTAGCGTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8843#0      GCGGTTGCTATGTCTAGTGAACCAATAGAACAGGAGCCTATTCTGCATCAGTCTCCTTCT 60
consensus_8843#1      ------------------------------------------------------------
                                                                                  

consensus_8843#0      CCAAATTGTGAAGTTTTAGTATCTACGACAGACGCCGAATCTGTAGAAAGTGAGCATCAC 120
consensus_8843#1      ------------------------------------------------------------
                                                                                  

consensus_8843#0      GAGCATTGTGCTTTTTCTCCACATCAAAGCATGTCTGACCCTCCAGACATTGACAGAATC 180
consensus_8843#1      ------------------------------------------------------------
                                                                                  

consensus_8843#0      ATTGCTGGTCTTTGCCCTAGCACATCCTCTGTTCATGAGAAGCCTCGGGAAATATCTAGT 240
consensus_8843#1      ---------------------------------------------------------AGG 3
                                                                               ** 

consensus_8843#0      GAACCAGATGACCCTGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAG 300
consensus_8843#1      GAACCAGATGACCCGGATTTAGCCACAACTCCTTCAAATCCTGATATGTCTGATCCTGAG 63
                      ************** *********************************************

consensus_8843#0      CGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAG 360
consensus_8843#1      CGTTTTGCTCAACATTACTGTCAGGTATTCCCTCTAGAGGTCAGAAGGGCCCTTTCAAAG 123
                      ************************************************************

consensus_8843#0      AAAAGATCTAATTCATTACTTAATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTT 420
consensus_8843#1      AAAAGATCTAATTCATTACTTAATCATCTAGTCTCCGAGGAATGTTCCGATGAGGAATTT 183
                      ************************************************************

consensus_8843#0      GTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAAT 480
consensus_8843#1      GTGCATGATTTTCCTGATGCGGAGCAAGCACGTGATTGTCAGAAGCCATCTGGCCAGAAT 243
                      ************************************************************

consensus_8843#0      ATTGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGG 540
consensus_8843#1      ATTGGTAGCAAGAGAAAGAAAGGACACAGGCGTGGCCCTACCCTTTGTGTCAAAGTGTGG 303
                      ************************************************************

consensus_8843#0      ACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGA 600
consensus_8843#1      ACCTTGCCTGAAGGTGTGCGGCTTCCAGTATCCTTGAACAATTCAGGTTTTCCTATTGGA 363
                      ************************************************************

consensus_8843#0      AAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCA 660
consensus_8843#1      AAAAATGCTGCCATGTTTGGTAACTTTCTGGGCACACTAGCGCGTGATGGAATATTGGCA 423
                      ************************************************************

consensus_8843#0      CCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAAGGATGTAATGTGGCAT 720
consensus_8843#1      CCTCTTACATATAAAAAATGGAAAAGTATACCAAAGGAGAACAAGGATGTAATGTGGCAT 483
                      ************************************************************

consensus_8843#0      ATTATTAAGCTTAAATTTTATGTTGCTCCATCTTCCGAGTCCTTGCTACTGAAATGCATA 780
consensus_8843#1      ATTATTAAGCTTAAATTTTATGTTGCTCCATCTTCCGAGTCCTTGCTACTGAAATGCATA 543
                      ************************************************************

consensus_8843#0      AGAACAAAGTGGAGGAATTGGGAGGTGTAACTTAAAACGAAAACCCTTTGATTCTCATAT 840
consensus_8843#1      AGAACAAAGTGGAGGAATTGGACACCCCACCTC----CAGGATCTCGTCGGGTTCCTCGT 599
                      *********************       * **     *   * * * * *  *  *   *

consensus_8843#0      AACTGAAGAGGAACGTCTTGCTGATTGTGATCCTCGTGTCCTAAAAGAACAGTGGCGATT 900
consensus_8843#1      CAGCTGCTGCCACCGCCATCGCCAC-GCGGCGGCGGCGGC--GGCGCCATTGCCTTCAGC 656
                       *         * ** * *    *  * *      * * *        *  *     *  

consensus_8843#0      CCTAGGGGCATTTTGGAATACCGAA 925
consensus_8843#1      CCTCAGCGCAGT----AGCGTCGG- 676
                      ***  * *** *    *    **