These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1523 fasta sequence [TTGATGGACGACACGTCACATCATTTCCGTACCGCACTGGATTTGTGCTTGAAGATGCCACTGGCTTATCATTGAATGGGGATCTTGATGTGCAATCGGTGTTTGCAGGGACTTTGCCCACTGCACACCCTAGCTTTTCACCTCAGAAACACCTAGAGATGTTGCCTATTTGGCAGGCCCCTCCCCTTCCAGACGAACCAATTGAGATTTTCATTGGCATCCTGTCAGCAGGCAACCATTTTGCTGAACGTATGGCTGTGAGGAAGACATGGATGTCTGCTGCCCAGAAGTCCTCGAATGTCGTGGCCCGTTTTTTTGTTGCCCTGAACAGCAGAAAAGAAGTCAATGCAGAATTGAAGAAAGAGGCAGAGTTTTTTGGGGACATTGTTATTGTGCCATTCATGGACAGCTATGACTTAGTTGTTCTAAAGACTGTGGCAATATGTGAATATGGGGTGCGTGTTGTTTCCGCTCGATATATAATGAAGTGTGATGACGATAATTTTGTTAGACTTGAATCAGTGAAGGATGAACTTAAGAAAATACCAAGAGGTAAAAGTCTCTATGTGGGAAACATGAATTATCACCACAAGCCATTGCGCACTGGGAAAGTGGGCTGTCACTTATGAAGGAGTGGCCAGAAGAGGATTACCCAACATATGCAAATGGTCCTGGCTACGTTATATCTTCTGATATTGCTGCTTCCATTGGGGTCAGAATTTACAGCTCATAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCAT-GTGGGTT-GAGCGGTTCAATAACACCAGACAT-GTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTATCAGATTTTTCTTTTCCTTCTTGTTTTTAGATTCAGGTTGTATCGCTGCAGCTCGAGTGTTCATACGTATTAATTTGAAATGTACGTACATATAATATTTTTGTCGAGAAATAC] [+] EMBL CA765782 [TTGATGGACGACACGTCACATCATTTCCGTACCGCACTGGATTTGTGCTTGAAGATGCCACTGGCTTATCATTGAATGGGGATCTTGATGTGCAATCGGTGTTTGCAGGGACTTTGCCCACTGCACACCCTAGCTTTTCACCTCAGAAACACCTAGAGATGTTGCCTATTTGGCAGGCCCCTCCCCTTCCAGACGAACCAATTGAGATTTTCATTGGCATCCTGTCAGCAGGCAACCATTTTGCTGAACGTATGGCTGTGAGGAAGACATGGATGTCTGCTGCCCAGAAGTCCTCGAATGTCGTGGCCCGTTTTTTTGTTGCCCTGAACAGCAGAAAAGAAGTCAATGCAGAATTGAAGAAAGAGGCAGAGTTTTTTGGGGACATTGTTATTGTGCCATTCATGGACAGCTATGACTTAGTTGTTCTAAAGACTGTGGCAATATGTGAATATGGGGTGCGTGTTGTTTCCGCTCGATATATAATGAAGTGTGATGACGATAATTTTGTTAGACTTGAATCAGTGAAGGATGAACTTAAGAAAATACCAAGAGGTAAAAGTCTCTATGTGGGAAACATGAATTATCACCACAAGCCATTGCGCACTGGGAAAGTGGGCTGTCACTTATGAAGGAGTGGCCAGAAGAGGATTACCCAACATATGCAAATGGTCCTGGCTACGTTATATCTTCTGATATTGCTGCTTCCATTGGGGTCAGAATTTACAGCTCATAAATTAANGCTCTTCAAAATGGNAAATGTGAGCATGGGCATGGTGGGTTGGAGCGG ] [+] EMBL CB669055 [ ccttTACCAAGAGGTAAAAGTCTCTATGTGGGAAACATGAATTATCACCACAAGCCATTGCGCACTGGG AAGTGGGCTGTCACTTATG AGGAGTGGCCAGAAGAGGATTACCCAACATATGCAAATGGTCCTGGCTACGTTATATCTTCTGATATTGCTGCTTCCATT GTGTCAGAATTTACAGCTCATAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCAT GTGGGTT GAGCGGTTCAATAACACCACACAT GTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTACAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATG ] [+] EMBL CA999061 [ AGGCTCTTCAAGATGGAAGATGTGAGCATGGGCAT GTGGCTT GAGCGGTTCATTAACACCAGACATGGTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTAT ] [-] EMBL CB650947 [ GCTCTTCAAGATGGAAGATGTGAGCATGGGCAT GTGGGTT GAGCGGTTCAATAACACCAGACAT GTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCGCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTATCAGATTTTTCTTTTCCTTCTTGTTTTTAGATTCAGGTTGTATCGCTGCAGCTCGAGTGTTCATACGTATTAATTTGAAATGTACGTACATATAATATTTTTGTCGAGAAATAC] [-] EMBL CB651517 [ TAACACCAGACAT GTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCGCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTATCAGATTTTTCTTTTCGTTCTTGTTTTTAGATTCAGGTTGTATCGCTGCAGCTC ] consensusID : consensus_8846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCATGTGGGTTGAGCGGTTCAATAACACCAGACATGTTCAATATGTTCACAGTATCAGGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCCGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTAAAAAAAAAAAAAA] [-] EMBL CA758956 [TAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCATGTGGGTTGAGCGGTTCAATAACACCAGACATGTTCAATATGTTCACAGTATCAGGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCCGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8846#0 TTGATGGACGACACGTCACATCATTTCCGTACCGCACTGGATTTGTGCTTGAAGATGCCA 60 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 CTGGCTTATCATTGAATGGGGATCTTGATGTGCAATCGGTGTTTGCAGGGACTTTGCCCA 120 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 CTGCACACCCTAGCTTTTCACCTCAGAAACACCTAGAGATGTTGCCTATTTGGCAGGCCC 180 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 CTCCCCTTCCAGACGAACCAATTGAGATTTTCATTGGCATCCTGTCAGCAGGCAACCATT 240 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 TTGCTGAACGTATGGCTGTGAGGAAGACATGGATGTCTGCTGCCCAGAAGTCCTCGAATG 300 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 TCGTGGCCCGTTTTTTTGTTGCCCTGAACAGCAGAAAAGAAGTCAATGCAGAATTGAAGA 360 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 AAGAGGCAGAGTTTTTTGGGGACATTGTTATTGTGCCATTCATGGACAGCTATGACTTAG 420 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 TTGTTCTAAAGACTGTGGCAATATGTGAATATGGGGTGCGTGTTGTTTCCGCTCGATATA 480 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 TAATGAAGTGTGATGACGATAATTTTGTTAGACTTGAATCAGTGAAGGATGAACTTAAGA 540 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 AAATACCAAGAGGTAAAAGTCTCTATGTGGGAAACATGAATTATCACCACAAGCCATTGC 600 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 GCACTGGGAAAGTGGGCTGTCACTTATGAAGGAGTGGCCAGAAGAGGATTACCCAACATA 660 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 TGCAAATGGTCCTGGCTACGTTATATCTTCTGATATTGCTGCTTCCATTGGGGTCAGAAT 720 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 TTACAGCTCATAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCATGTGGGTTG 780 consensus_8846#1 ----------TAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCATGTGGGTTG 50 ************************************************** consensus_8846#0 AGCGGTTCAATAACACCAGACATGTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTG 840 consensus_8846#1 AGCGGTTCAATAACACCAGACATGTTCAATATGTTCACAGTATCAGGTTCTGCCAATTTG 110 ********************************************* ************** consensus_8846#0 GATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGT 900 consensus_8846#1 GATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGT 170 ************************************************************ consensus_8846#0 GGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACT 960 consensus_8846#1 GGGATAAGCTGCAGTCCGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACT 230 **************** ******************************************* consensus_8846#0 GGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCC 1020 consensus_8846#1 GGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCC 290 ************************************************************ consensus_8846#0 TGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAA 1080 consensus_8846#1 TGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAA 350 ************************************************************ consensus_8846#0 ATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACC 1140 consensus_8846#1 ATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACC 410 ************************************************************ consensus_8846#0 AACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATC 1200 consensus_8846#1 AACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATC 470 ************************************************************ consensus_8846#0 TGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATT 1260 consensus_8846#1 TGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATT 530 ************************************************************ consensus_8846#0 GTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAAT 1320 consensus_8846#1 GTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAAT 590 ************************************************************ consensus_8846#0 TTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCT 1380 consensus_8846#1 TTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCT 650 ************************************************************ consensus_8846#0 GCAAACATCTTGCATGAGTTCATGGAGTATCAGATTTTTCTTTTCCTTCTTGTTTTTAGA 1440 consensus_8846#1 GCAAACATCTTGCATGAGTTCATGGAGTAAAAAAAAAAAAAA------------------ 692 ***************************** * * consensus_8846#0 TTCAGGTTGTATCGCTGCAGCTCGAGTGTTCATACGTATTAATTTGAAATGTACGTACAT 1500 consensus_8846#1 ------------------------------------------------------------ consensus_8846#0 ATAATATTTTTGTCGAGAAATAC 1523 consensus_8846#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||