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Oryza sativa
cluster # 8850 cluster # 8850       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8850#0 length = 2460 sequences # 5  
consensus_8850#1 length = 687 sequences # 1  

consensusID : consensus_8850#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2460
fasta sequence
                              [CTCATTCTCCGTCTCCTCTCCCCAACTCCTCGCCTCGCCATGGCGCCACCTCCCCTGCACCTCTTCTCCCCGCATGTCCCCTCGACGTCCGTCTCCCCGCCGGACCCCGCCACCGAGGCCCCTCCGGCTCCGAAGCAGCACCGTGGGCCCAGACCGGCGCCAAGAAACCCCGGCTCCGCCAAGCCCCTCACCGCCGGCGTCCCCGGCGGCCGCACCCGCCGCGCGGTCCTCGGAATCATCCGCAAGGTCCGCTCCCTCGAGCTCTCCGACCCGCGCACACCCAGCCCCAATGGTGGTGGTGGTAGTAGTAGCAGTAGCACCGCGACCGCGCGCGTCCCCTTCCACCTCCCGATACATCCGCCGCCGCCGGAGCGGGAGGAGGAGGAGGAGAAGAAGGGGATTCGCAGGGCGGTGCCGTGGGCCGCGGCGAGGGACGAGGAGACCAAGGTGGTGCTGCGGCGGGAGAAGAAGACGCGGGTGCCGACGCGCGCGGAGACGGAGCTGGAGGCCGGCGAGCTGGAGCGGCTGCGGCGGGCGGCGCGGGGGAAGGAGCGGTGGGCGCGGGCCAAGAAGGCCGGGATCACCGACGAGGTGGTGGAGGAGGTGCGGGGGCAGTGGGCGAAGGGCCAGGAGCTCGCCGGCGTGAGGATCGTGGAGCCGCTCCGGCGATGCATGGACCGGGCAAGGGAGATTCTTGAGATTAAAACAGGAGGCTTAGTTGTTTGGACAAGAGGGGGCATACATTTTGTGTACAGAGGAAGCAGTTACCTAGAAAACGCAAAGCGGCATCGTGACTTTGTTAATTATAATGAGGAACTTTCCCCAGTAACATCTAACAATCCTACATCCCAAGGGAAATATTGGAGTAAAGATGTAACTTTAACCAATGATAATGATGAAGCTGATGATAAGGACGACAAACCTATCAAGGGAACACTATATGAAAGAGAAGTCAACAGACTACTGGACAGTTTGGGCCCTCGATTTATCGATTGGTGGTGGAACACACCATTGCCTGTTGATGCTGATCTCCTTCCTGAGGTTGTCCCTGACTTCAAGACTCCATTTAGACAATGCCCTCCTGGTGTGAGACCAGCACTAGCAGATGAGGAGCTGACCTACCTGCGGAAGCATGCACGGCCTTTGCCAACACATTTTGTCCTAGGTAGAAATACAAAACTGCAGGGTTTGGCTGCTGCTATACTAAAGCTTTGGGAAAAGAGCCTTATAGCGAAGGTTGCAGTGAAAGTGGGTATCCAAAATACCAATCATGAACAGATGGCCAGAAATCTTAAGCGTCTTACAGGAGGAACTGTCATATTGAGGAACAAGGATTATATTATTATATATAGAGGCAAAGATTTTCTTCCCGGTGGCGTTGCTGAATCAGTTATTGAACGGGAGTCTCAGGTACATGACCAGCAGGCGAAAGAAGAGGAGGCTCGATTAAAGATGGCTGACTCACTTCAAATGATTGTTGGACTATCATCGGAGAGAAGTTATGTGGGAACTTTCAGAGAGTATCAGGATTTCCATGATAGCCATGCACGTAGAACAACTGAAAACAACTTCAGAATTCAACTAGAGGCAAAGAAGCATCGATTGGAAAAGGAACTGAAAGACCAGGAATGGAGACTTTCCATGCTTACCAAGAAGATTGAAAGATCAAACCAAGTGCTGGCAAAGCTTCATAGTTCTTGGAGCCCTTCAAAGAAAGATGGAGACAGAGAACTCTTGACAGAGGAGGAAAGGAGGATATTCCGAAAAATTGGCCTAAAAATGGATGAACATGTGCTGCTTGGGAGACGTGGTGTCTTTGAAGGCGTAATTGAAGAGATTCATCAACACTGGAAACATAAAGAGGTTGTGAAAGTAATTACCAAGCAGAACCAAGCCAGCCAGATCACGTACACATCTATGATGCTTGAGGTTGAGACAGGAGGCACATTAATAGCAATAGAGAGGTTCACTACCAGCCATGCCATAATACTTTACCGAGGAAAGAATTATCGTCGGCCAACAAAATCAGCACCCAGTAATCTCCTGACAAAAAGAGAAGCATTACAAAGATCAATTGAGGTTCAGCGACGAGGGTCAATGAAATACTT-CGCTCAGGAGAGGAAAAAGTCCATTGATGAATTGAAGAGAGAACTGAGGAATGTGACATGGGAAATCAGGAAGCTAAA-CCATGATACTGAACAGTCTTGGACAGCATGATCGCTATCAACATTGAAGATTGGAATAACG-ATTCATCCTCTCTTTTTTTTTTC-GTTTTTAACATGATAA-CTA-CAAAGAACAAAGT-ACACAGAGGCCACT-AGATCT-GGTAGGTATGGTAGATATGGCCACAATGAATTATCTTGCAAGTGTGAAGATG-TTTTTTTTTTTGTTTATGTACATGTGATACACTAAAGCACATGAGAGCAGAATCATTCAATTTGGCTCTTATAATGGGACGAAATA]

[+] EMBL AK066365             [CTCATTCTCCGTCTCCTCTCCCCAACTCCTCGCCTCGCCATGGCGCCACCTCCCCTGCACCTCTTCTCCCCGCATGTCCCCTCGACGTCCGTCTCCCCGCCGGACCCCGCCACCGAGGCCCCTCCGGCTCCGAAGCAGCACCGTGGGCCCAGACCGGCGCCAAGAAACCCCGGCTCCGCCAAGCCCCTCACCGCCGGCGTCCCCGGCGGCCGCACCCGCCGCGCGGTCCTCGGAATCATCCGCAAGGTCCGCTCCCTCGAGCTCTCCGACCCGCGCACACCCAGCCCCAATGGTGGTGGTGGTAGTAGTAGCAGTAGCACCGCGACCGCGCGCGTCCCCTTCCACCTCCCGATACATCCGCCGCCGCCGGAGCGGGAGGAGGAGGAGGAGAAGAAGGGGATTCGCAGGGCGGTGCCGTGGGCCGCGGCGAGGGACGAGGAGACCAAGGTGGTGCTGCGGCGGGAGAAGAAGACGCGGGTGCCGACGCGCGCGGAGACGGAGCTGGAGGCCGGCGAGCTGGAGCGGCTGCGGCGGGCGGCGCGGGGGAAGGAGCGGTGGGCGCGGGCCAAGAAGGCCGGGATCACCGACGAGGTGGTGGAGGAGGTGCGGGGGCAGTGGGCGAAGGGCCAGGAGCTCGCCGGCGTGAGGATCGTGGAGCCGCTCCGGCGATGCATGGACCGGGCAAGGGAGATTCTTGAGATTAAAACAGGAGGCTTAGTTGTTTGGACAAGAGGGGGCATACATTTTGTGTACAGAGGAAGCAGTTACCTAGAAAACGCAAAGCGGCATCGTGACTTTGTTAATTATAATGAGGAACTTTCCCCAGTAACATCTAACAATCCTACATCCCAAGGGAAATATTGGAGTAAAGATGTAACTTTAACCAATGATAATGATGAAGCTGATGATAAGGACGACAAACCTATCAAGGGAACACTATATGAAAGAGAAGTCAACAGACTACTGGACAGTTTGGGCCCTCGATTTATCGATTGGTGGTGGAACACACCATTGCCTGTTGATGCTGATCTCCTTCCTGAGGTTGTCCCTGACTTCAAGACTCCATTTAGACAATGCCCTCCTGGTGTGAGACCAGCACTAGCAGATGAGGAGCTGACCTACCTGCGGAAGCATGCACGGCCTTTGCCAACACATTTTGTCCTAGGTAGAAATACAAAACTGCAGGGTTTGGCTGCTGCTATACTAAAGCTTTGGGAAAAGAGCCTTATAGCGAAGGTTGCAGTGAAAGTGGGTATCCAAAATACCAATCATGAACAGATGGCCAGAAATCTTAAGCGTCTTACAGGAGGAACTGTCATATTGAGGAACAAGGATTATATTATTATATATAGAGGCAAAGATTTTCTTCCCGGTGGCGTTGCTGAATCAGTTATTGAACGGGAGTCTCAGGTACATGACCAGCAGGCGAAAGAAGAGGAGGCTCGATTAAAGATGGCTGACTCACTTCAAATGATTGTTGGACTATCATCGGAGAGAAGTTATGTGGGAACTTTCAGAGAGTATCAGGATTTCCATGATAGCCATGCACGTAGAACAACTGAAAACAACTTCAGAATTCAACTAGAGGCAAAGAAGCATCGATTGGAAAAGGAACTGAAAGACCAGGAATGGAGACTTTCCATGCTTACCAAGAAGATTGAAAGATCAAACCAAGTGCTGGCAAAGCTTCATAGTTCTTGGAGCCCTTCAAAGAAAGATGGAGACAGAGAACTCTTGACAGAGGAGGAAAGGAGGATATTCCGAAAAATTGGCCTAAAAATGGATGAACATGTGCTGCTTGGGAGACGTGGTGTCTTTGAAGGCGTAATTGAAGAGATTCATCAACACTGGAAACATAAAGAGGTTGTGAAAGTAATTACCAAGCAGAACCAAGCCAGCCAGATCACGTACACATCTATGATGCTTGAGGTTGAGACAGGAGGCACATTAATAGCAATAGAGAGGTTCACTACCAGCCATGCCATAATACTTTACCGAGGAAAGAATTATCGTCGGCCAACAAAATCAGCACCCAGTAATCTCCTGACAAAAAGAGAAGCATTACAAAGATCAATTGAGGTTCAGCGACGAGGGTCAATGAAATACTT CGCTCAGGAGAGGAAAAAGTCCATTGATGAATTGAAGAGAGAACTGAGGAATGTGACATGGGAAATCAGGAAGCTAAA CCATGATACTGAACAGTCTTGGACAGCATGATCGCTATCAACATTGAAGATTGGAATAACG ATTCATCCTCTCTTTTTTTTTTC GTTTTTAACATGATAA CTA CAAAGAACAAAGT ACACAGAGGCCACT AGATCT GGTAGGTATGGTAGATATGGCCACAATGAATTATCTTGCAAGTGTGAAGATG TTTTTTTTTTTGTTTATGTACATGTGATACACTAAAGCACATGAGAGCAGAATCATTCAA                          ]
[+] EMBL CB641029             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCGCGCGCCAAGAAGGCCGGGATCACCGACGAGGTGGTGGAGGAGGTGCGGGGGCAGTGGGCGAAGGGCCAGGAGCTCGCCGGCGTGAGGATCGTGGAGCCGCTCCGGCGATGCATGGACCGGGCAAGGGAGATTCTTGAGATTAAAACAGGAGGCTTAGTTGTTTGGACAAGAGGGGGCATACATTTTGTGTACAGAGGAAGCAGTTACCTAGAAAACGCAAAGCGGCATCGTGACTTTGTTAATTATAATGAGGAACTTTCCCCAGTAACATCTAACAATCCTACATCCCAAGGGAAATATTGGAGTAAAGATGAAACTTTAACCAATGATAATGATGAAGCTGATGATAAGGACGACAAACCTATCAAGGGAACACTATATGAAAGAGAAGTCAACAGACTACTGGACAGTTTGGGCCCTCGATTTATCGATTGGTGGTGGAACACACCATTGCCTGTTGATGCTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB679533             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTAACCAATGATAATGATGAAGCTGATGATAAGGACGACAAACCTATCAAGGGAACACTATATGAAAGAGAAGCCAACAGACTACTGGACAGTTAGGGCCCTCGATTTATCGATTGGTGGCGGAACACACCATTGCCTGTTGATGCTGATCTCCTTCCTGAGGATGTCCCTGACTTCAAGACTCCGTTTAAACAATGCCCTCCTGGTGTGAGACCAGCACTAGCAGATGAGGAGCTGACCTACCTGCGGAAGCATGCACGGCCTTTGCCAACACATTTTGTCCGAAGTATAAATACAAAACTGCAAGGTTTGGCTGCTGCTATACTAAAGCTTTGGGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB679534             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCAAACCAAGTGCTGGCAAAGCTTCATAGTTCTTGGAGCCCTTCAAAGAAAGATGGAGACAGAGAACTCTTGACAGAGGAGGAAAGGAGGATATTCCGAAAAATTGGCCTAAAAATGGATGAACATGTGCTGCTTGGGAGACGTGGTGTCTTTGAAGGCGTAATTGAAGAGATTCATCAACACTGGAAACATAAAGAGGTTGTGAAAGTAATTACCAAGCAGAACCAAGCCAGCCAGATCACGTACACATCTATGATGCTTGAGGTTGAGACAGGAGGCACATTAATAGCAATAGAGAGGTTCACTACCAGCCATGCCATAATACTTTACCGAGGAAAGAATTATCGTCGGCCAACAAAATCAGCACCCAGTAATCTCCTGACAAAAAGAGAAGCATTACAAAGATCAATTGAGGTTCAGCGACGAGGGTCAATGAAATACTT CGCTCAGGAGAGGAAAAAGTCCATTGATGAATTGAAGAGAGAACTGAGGAATGTGACATGGGAAATCAGGAAGCTAAA CCATGATACTGAACAGTCTTGGACAGCATGATCGCTATCAACATTGAAGATTGGAATAACG ATTCATCCTCTCTTTTTTTTTTC GTTTTTAACATGATAA CTA CAAAGAACAAAGT ACACAGAGGCCACT AGATCT GGTAGGTATGGTAGATATGGCCACAATGAATTATCTTGCAAGTGTGAAGATGTTTTTTTTTTTTGTTTATGTACATGTGATACACTAAAGCACATGAGAGCAGAATCATTCAATTTGGCTCTTATAATGGGACGAAATA]
[+] EMBL CA765554             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        nGGATGTTNCGAAAAATTGGCCTAAAAATGGATGAACATGTGCTGCTTGGGAGACGTGGTGTCTTTGAAGGCGTAATTGAAGAGATTCATCAACACTGGAAACATAAAGAGGTTGTGAAAGTAATTACCAAGCAGAACCAAGCCAGCCAGATCACGTACACATCTATGATGCTTGAGGTTGAGACAGGAGGCACATTAATAGCAATAGAGAGGTTCACTACCAGCCATGCCATAATACTTTACCGAGGAAAGAATTATCGTCGGCCAACAAAATCAGCACCCAGTAATCTCCTGNCAAAAAGAGAAGCATTACAAAGATCAATTGAGGGTCAGCGACGAGGGTCAATGAAATACTTCCGCTCAGGAGAGGAAAAAGTNCNTTGATGAATTGAAGAGAGAACTGNGGAATGTGACATGGGAAATCAGGAAGCTAAACCCATGATACTGAACAGTCTTGGACAGNATGATCCCTATCAACATTGAAGATTGGNATAACGNTTTCATCCNCTCTTTTTTTTTTCGGTTTTTAACTTG TAACCTACCAAGGAACAAAGTCCCCCNGAGGGCNCTAAAATCTGGGGAGGAATGGGAAAT                                                                                                                           ]


>consensus_8850#0 CTCATTCTCCGTCTCCTCTCCCCAACTCCTCGCCTCGCCATGGCGCCACCTCCCCTGCAC CTCTTCTCCCCGCATGTCCCCTCGACGTCCGTCTCCCCGCCGGACCCCGCCACCGAGGCC CCTCCGGCTCCGAAGCAGCACCGTGGGCCCAGACCGGCGCCAAGAAACCCCGGCTCCGCC AAGCCCCTCACCGCCGGCGTCCCCGGCGGCCGCACCCGCCGCGCGGTCCTCGGAATCATC CGCAAGGTCCGCTCCCTCGAGCTCTCCGACCCGCGCACACCCAGCCCCAATGGTGGTGGT GGTAGTAGTAGCAGTAGCACCGCGACCGCGCGCGTCCCCTTCCACCTCCCGATACATCCG CCGCCGCCGGAGCGGGAGGAGGAGGAGGAGAAGAAGGGGATTCGCAGGGCGGTGCCGTGG GCCGCGGCGAGGGACGAGGAGACCAAGGTGGTGCTGCGGCGGGAGAAGAAGACGCGGGTG CCGACGCGCGCGGAGACGGAGCTGGAGGCCGGCGAGCTGGAGCGGCTGCGGCGGGCGGCG CGGGGGAAGGAGCGGTGGGCGCGGGCCAAGAAGGCCGGGATCACCGACGAGGTGGTGGAG GAGGTGCGGGGGCAGTGGGCGAAGGGCCAGGAGCTCGCCGGCGTGAGGATCGTGGAGCCG CTCCGGCGATGCATGGACCGGGCAAGGGAGATTCTTGAGATTAAAACAGGAGGCTTAGTT GTTTGGACAAGAGGGGGCATACATTTTGTGTACAGAGGAAGCAGTTACCTAGAAAACGCA AAGCGGCATCGTGACTTTGTTAATTATAATGAGGAACTTTCCCCAGTAACATCTAACAAT CCTACATCCCAAGGGAAATATTGGAGTAAAGATGTAACTTTAACCAATGATAATGATGAA GCTGATGATAAGGACGACAAACCTATCAAGGGAACACTATATGAAAGAGAAGTCAACAGA CTACTGGACAGTTTGGGCCCTCGATTTATCGATTGGTGGTGGAACACACCATTGCCTGTT GATGCTGATCTCCTTCCTGAGGTTGTCCCTGACTTCAAGACTCCATTTAGACAATGCCCT CCTGGTGTGAGACCAGCACTAGCAGATGAGGAGCTGACCTACCTGCGGAAGCATGCACGG CCTTTGCCAACACATTTTGTCCTAGGTAGAAATACAAAACTGCAGGGTTTGGCTGCTGCT ATACTAAAGCTTTGGGAAAAGAGCCTTATAGCGAAGGTTGCAGTGAAAGTGGGTATCCAA AATACCAATCATGAACAGATGGCCAGAAATCTTAAGCGTCTTACAGGAGGAACTGTCATA TTGAGGAACAAGGATTATATTATTATATATAGAGGCAAAGATTTTCTTCCCGGTGGCGTT GCTGAATCAGTTATTGAACGGGAGTCTCAGGTACATGACCAGCAGGCGAAAGAAGAGGAG GCTCGATTAAAGATGGCTGACTCACTTCAAATGATTGTTGGACTATCATCGGAGAGAAGT TATGTGGGAACTTTCAGAGAGTATCAGGATTTCCATGATAGCCATGCACGTAGAACAACT GAAAACAACTTCAGAATTCAACTAGAGGCAAAGAAGCATCGATTGGAAAAGGAACTGAAA GACCAGGAATGGAGACTTTCCATGCTTACCAAGAAGATTGAAAGATCAAACCAAGTGCTG GCAAAGCTTCATAGTTCTTGGAGCCCTTCAAAGAAAGATGGAGACAGAGAACTCTTGACA GAGGAGGAAAGGAGGATATTCCGAAAAATTGGCCTAAAAATGGATGAACATGTGCTGCTT GGGAGACGTGGTGTCTTTGAAGGCGTAATTGAAGAGATTCATCAACACTGGAAACATAAA GAGGTTGTGAAAGTAATTACCAAGCAGAACCAAGCCAGCCAGATCACGTACACATCTATG ATGCTTGAGGTTGAGACAGGAGGCACATTAATAGCAATAGAGAGGTTCACTACCAGCCAT GCCATAATACTTTACCGAGGAAAGAATTATCGTCGGCCAACAAAATCAGCACCCAGTAAT CTCCTGACAAAAAGAGAAGCATTACAAAGATCAATTGAGGTTCAGCGACGAGGGTCAATG AAATACTTCGCTCAGGAGAGGAAAAAGTCCATTGATGAATTGAAGAGAGAACTGAGGAAT GTGACATGGGAAATCAGGAAGCTAAACCATGATACTGAACAGTCTTGGACAGCATGATCG CTATCAACATTGAAGATTGGAATAACGATTCATCCTCTCTTTTTTTTTTCGTTTTTAACA TGATAACTACAAAGAACAAAGTACACAGAGGCCACTAGATCTGGTAGGTATGGTAGATAT GGCCACAATGAATTATCTTGCAAGTGTGAAGATGTTTTTTTTTTTGTTTATGTACATGTG ATACACTAAAGCACATGAGAGCAGAATCATTCAATTTGGCTCTTATAATGGGACGAAATA



consensusID : consensus_8850#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence
                              [NNNNNNNNNNNGAGGATCAATGCTATGTAATTTCTGCCTGGGAAACCTGGGTTTTTTAAGGGGTTAATGAAAGATTTCATCACCCCTGGAACCTAAAGAGGTTGGGAAGTAAATTCCCAGGCAGACCCNNNNNNNNCACACAGTCGTCCACATTTATGTGCCTGAGGTTGAGACAGAAGGCCCATTTATAGCAATAGAGAGGTTCCTCTCAAGCATGCCATATACTTTACGGAGAAAAGANTATTGTCGGCCANCAAAATCAGCACNCAGTATTCTCCTGACAAAAAGAGAAGCATTACAAAGATCAANTGAGGTTTGGCGACGAGGGTCAATGAAATACTTCGCTCAGGAGAGGAAAAAGTCCATTGATGAATTGAAGAGAGAACTGAGGAATGTGACATGGGAAATCAGGAAGCTAAACCATGATACTGAACAGTCTTGGACAGCATGATCGCTATCAACATTGAAGATTGGAATAACGATTCATCCTCTCTTTTTTTTTTCGTTTTTAACATGATAACTACAAAGAACAAAGTACACAGAGGCCACTAGATCTGGTAGGTATGGTAGATATGGCCACAATGAATTATCTTGCAAGTGTGAAGATGTTTTTTTTTTGTTTATGTACATGTGATACACTAAAGCACATGAGAGCAGAATCATTCAATTTGGCTCTGATAAAAAAAA]

[-] EMBL CA759441             [NNNNNNNNNNNGAGGATCAATGCTATGTAATTTCTGCCTGGGAAACCTGGGTTTTTTAAGGGGTTAATGAAAGATTTCATCACCCCTGGAACCTAAAGAGGTTGGGAAGTAAATTCCCAGGCAGACCCNNNNNNNNCACACAGTCGTCCACATTTATGTGCCTGAGGTTGAGACAGAAGGCCCATTTATAGCAATAGAGAGGTTCCTCTCAAGCATGCCATATACTTTACGGAGAAAAGANTATTGTCGGCCANCAAAATCAGCACNCAGTATTCTCCTGACAAAAAGAGAAGCATTACAAAGATCAANTGAGGTTTGGCGACGAGGGTCAATGAAATACTTCGCTCAGGAGAGGAAAAAGTCCATTGATGAATTGAAGAGAGAACTGAGGAATGTGACATGGGAAATCAGGAAGCTAAACCATGATACTGAACAGTCTTGGACAGCATGATCGCTATCAACATTGAAGATTGGAATAACGATTCATCCTCTCTTTTTTTTTTCGTTTTTAACATGATAACTACAAAGAACAAAGTACACAGAGGCCACTAGATCTGGTAGGTATGGTAGATATGGCCACAATGAATTATCTTGCAAGTGTGAAGATGTTTTTTTTTTGTTTATGTACATGTGATACACTAAAGCACATGAGAGCAGAATCATTCAATTTGGCTCTGATAAAAAAAA]


>consensus_8850#1 NNNNNNNNNNNGAGGATCAATGCTATGTAATTTCTGCCTGGGAAACCTGGGTTTTTTAAG GGGTTAATGAAAGATTTCATCACCCCTGGAACCTAAAGAGGTTGGGAAGTAAATTCCCAG GCAGACCCNNNNNNNNCACACAGTCGTCCACATTTATGTGCCTGAGGTTGAGACAGAAGG CCCATTTATAGCAATAGAGAGGTTCCTCTCAAGCATGCCATATACTTTACGGAGAAAAGA NTATTGTCGGCCANCAAAATCAGCACNCAGTATTCTCCTGACAAAAAGAGAAGCATTACA AAGATCAANTGAGGTTTGGCGACGAGGGTCAATGAAATACTTCGCTCAGGAGAGGAAAAA GTCCATTGATGAATTGAAGAGAGAACTGAGGAATGTGACATGGGAAATCAGGAAGCTAAA CCATGATACTGAACAGTCTTGGACAGCATGATCGCTATCAACATTGAAGATTGGAATAAC GATTCATCCTCTCTTTTTTTTTTCGTTTTTAACATGATAACTACAAAGAACAAAGTACAC AGAGGCCACTAGATCTGGTAGGTATGGTAGATATGGCCACAATGAATTATCTTGCAAGTG TGAAGATGTTTTTTTTTTGTTTATGTACATGTGATACACTAAAGCACATGAGAGCAGAAT CATTCAATTTGGCTCTGATAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8850#0      CTCATTCTCCGTCTCCTCTCCCCAACTCCTCGCCTCGCCATGGCGCCACCTCCCCTGCAC 60
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CTCTTCTCCCCGCATGTCCCCTCGACGTCCGTCTCCCCGCCGGACCCCGCCACCGAGGCC 120
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CCTCCGGCTCCGAAGCAGCACCGTGGGCCCAGACCGGCGCCAAGAAACCCCGGCTCCGCC 180
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      AAGCCCCTCACCGCCGGCGTCCCCGGCGGCCGCACCCGCCGCGCGGTCCTCGGAATCATC 240
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CGCAAGGTCCGCTCCCTCGAGCTCTCCGACCCGCGCACACCCAGCCCCAATGGTGGTGGT 300
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GGTAGTAGTAGCAGTAGCACCGCGACCGCGCGCGTCCCCTTCCACCTCCCGATACATCCG 360
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CCGCCGCCGGAGCGGGAGGAGGAGGAGGAGAAGAAGGGGATTCGCAGGGCGGTGCCGTGG 420
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GCCGCGGCGAGGGACGAGGAGACCAAGGTGGTGCTGCGGCGGGAGAAGAAGACGCGGGTG 480
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CCGACGCGCGCGGAGACGGAGCTGGAGGCCGGCGAGCTGGAGCGGCTGCGGCGGGCGGCG 540
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CGGGGGAAGGAGCGGTGGGCGCGGGCCAAGAAGGCCGGGATCACCGACGAGGTGGTGGAG 600
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GAGGTGCGGGGGCAGTGGGCGAAGGGCCAGGAGCTCGCCGGCGTGAGGATCGTGGAGCCG 660
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CTCCGGCGATGCATGGACCGGGCAAGGGAGATTCTTGAGATTAAAACAGGAGGCTTAGTT 720
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GTTTGGACAAGAGGGGGCATACATTTTGTGTACAGAGGAAGCAGTTACCTAGAAAACGCA 780
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      AAGCGGCATCGTGACTTTGTTAATTATAATGAGGAACTTTCCCCAGTAACATCTAACAAT 840
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CCTACATCCCAAGGGAAATATTGGAGTAAAGATGTAACTTTAACCAATGATAATGATGAA 900
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GCTGATGATAAGGACGACAAACCTATCAAGGGAACACTATATGAAAGAGAAGTCAACAGA 960
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CTACTGGACAGTTTGGGCCCTCGATTTATCGATTGGTGGTGGAACACACCATTGCCTGTT 1020
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GATGCTGATCTCCTTCCTGAGGTTGTCCCTGACTTCAAGACTCCATTTAGACAATGCCCT 1080
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CCTGGTGTGAGACCAGCACTAGCAGATGAGGAGCTGACCTACCTGCGGAAGCATGCACGG 1140
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CCTTTGCCAACACATTTTGTCCTAGGTAGAAATACAAAACTGCAGGGTTTGGCTGCTGCT 1200
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      ATACTAAAGCTTTGGGAAAAGAGCCTTATAGCGAAGGTTGCAGTGAAAGTGGGTATCCAA 1260
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      AATACCAATCATGAACAGATGGCCAGAAATCTTAAGCGTCTTACAGGAGGAACTGTCATA 1320
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      TTGAGGAACAAGGATTATATTATTATATATAGAGGCAAAGATTTTCTTCCCGGTGGCGTT 1380
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GCTGAATCAGTTATTGAACGGGAGTCTCAGGTACATGACCAGCAGGCGAAAGAAGAGGAG 1440
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GCTCGATTAAAGATGGCTGACTCACTTCAAATGATTGTTGGACTATCATCGGAGAGAAGT 1500
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      TATGTGGGAACTTTCAGAGAGTATCAGGATTTCCATGATAGCCATGCACGTAGAACAACT 1560
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GAAAACAACTTCAGAATTCAACTAGAGGCAAAGAAGCATCGATTGGAAAAGGAACTGAAA 1620
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GACCAGGAATGGAGACTTTCCATGCTTACCAAGAAGATTGAAAGATCAAACCAAGTGCTG 1680
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GCAAAGCTTCATAGTTCTTGGAGCCCTTCAAAGAAAGATGGAGACAGAGAACTCTTGACA 1740
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GAGGAGGAAAGGAGGATATTCCGAAAAATTGGCCTAAAAATGGATGAACATGTGCTGCTT 1800
consensus_8850#1      --------------------NNNNNNNNNNNGAGGATCAATGC-TATGTAATTTCTGCCT 39
                                                     *   *  ****  *    *  * **** *

consensus_8850#0      GGGAGACGTGGTGTCTTTGAAGGCGTAATTGAAGAGATTCATCAACACTGGAAACATAAA 1860
consensus_8850#1      GGGAAACCTGG-GTTTTTTAAGGGGTTAATGAAAGATTTCATCACCCCTGGAA-CCTAAA 97
                      **** ** *** ** *** **** ** * ****    ******* * ****** * ****

consensus_8850#0      GAGGTTGTGAAAGTAATTACCAAGCAGAACCAAGCCAGCCAGATCA-CGTACACATCTAT 1919
consensus_8850#1      GAGGTTGGGAAGTAAATTCCCAGGCAGACCCNNNNNNNNCACACAGTCGTCCACATTTAT 157
                      ******* ***   **** *** ***** **        ** *    *** ***** ***

consensus_8850#0      GATGCTTGAGGTTGAGACAGGAGGCACATTAATAGCAATAGAGAGGTTCACTACCAGCCA 1979
consensus_8850#1      G-TGCCTGAGGTTGAGACAGAAGGCCCATTTATAGCAATAGAGAGGTTC-CTCTCAAGCA 215
                      * *** ************** **** **** ****************** **  **  **

consensus_8850#0      TGCCATAATACTTTACCGAGGAAAGAATTATCGTCGGCCAACAAAATCAGCACCCAGTAA 2039
consensus_8850#1      TGCCATA-TACTTTACGGAGAAAAGANT-ATTGTCGGCCANCAAAATCAGCACNCAGTAT 273
                      ******* ******** *** ***** * ** ******** ************ ***** 

consensus_8850#0      TCTCCTGACAAAAAGAGAAGCATTACAAAGATCAATTGAGGTTCAGCGACGAGGGTCAAT 2099
consensus_8850#1      TCTCCTGACAAAAAGAGAAGCATTACAAAGATCAANTGAGGTTTGGCGACGAGGGTCAAT 333
                      *********************************** *******  ***************

consensus_8850#0      GAAATACTTCGCTCAGGAGAGGAAAAAGTCCATTGATGAATTGAAGAGAGAACTGAGGAA 2159
consensus_8850#1      GAAATACTTCGCTCAGGAGAGGAAAAAGTCCATTGATGAATTGAAGAGAGAACTGAGGAA 393
                      ************************************************************

consensus_8850#0      TGTGACATGGGAAATCAGGAAGCTAAACCATGATACTGAACAGTCTTGGACAGCATGATC 2219
consensus_8850#1      TGTGACATGGGAAATCAGGAAGCTAAACCATGATACTGAACAGTCTTGGACAGCATGATC 453
                      ************************************************************

consensus_8850#0      GCTATCAACATTGAAGATTGGAATAACGATTCATCCTCTCTTTTTTTTTTCGTTTTTAAC 2279
consensus_8850#1      GCTATCAACATTGAAGATTGGAATAACGATTCATCCTCTCTTTTTTTTTTCGTTTTTAAC 513
                      ************************************************************

consensus_8850#0      ATGATAACTACAAAGAACAAAGTACACAGAGGCCACTAGATCTGGTAGGTATGGTAGATA 2339
consensus_8850#1      ATGATAACTACAAAGAACAAAGTACACAGAGGCCACTAGATCTGGTAGGTATGGTAGATA 573
                      ************************************************************

consensus_8850#0      TGGCCACAATGAATTATCTTGCAAGTGTGAAGATGTTTTTTTTTTTGTTTATGTACATGT 2399
consensus_8850#1      TGGCCACAATGAATTATCTTGCAAGTGTGAAGATGTTTTTTTTTT-GTTTATGTACATGT 632
                      ********************************************* **************

consensus_8850#0      GATACACTAAAGCACATGAGAGCAGAATCATTCAATTTGGCTCTTATAATGGGACGAAAT 2459
consensus_8850#1      GATACACTAAAGCACATGAGAGCAGAATCATTCAATTTGGCTCTGATAAAAAAAA----- 687
                      ******************************************** ****    *      

consensus_8850#0      A 2460
consensus_8850#1      -
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)