These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 693 fasta sequence [TTTTTTTTTTTTGTTTTTACTAGTATAATCCCTCTTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAGATTACCATCTCTCTCTC-TTTTTTTTTCTGGAAGAATAAAAGATCATCTACCAACTCTATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTACTTCAAAAGGATTGATGAATCCAGAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACGACGGTCCACGGTCAAACATGGCACGCCGGCCGGCTGTTCGCCGGCCGGCGACGATCCACCGGCGGCGATCGATCAGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGCCTGCGGAGAAAGGAGAGGCGAAATGGTGGCTGNGGCTTTGCT] [+] EMBL CA760422 [TTTTTTTTTTTTGTTTTTACTAGTATAATCCCTCTTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAGATTACCATCTCTCTCTC TTTTTTTTTCTGGAAGAATAAAAGATCATCTACCAACTCTATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTACTTCAAAAGGATTGATGAATCCAGAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACGACGGTCCACGGTCAAACATGGCACGCCGGCCGGCTGTTCGCCGGCCGGCGACGATCCACCGGCGGCGATCGATCAGTAGCACCGGTAGACGACGTANTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCACCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAAACGGAGAAAAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGGCTTGCTTCGCCTGCGGAGAAAGGAGAGGCGAAATGGTGGCTGNGGCTTTGCT] [-] EMBL AK107714 [ TCCCTCGTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAGATTACCATCTCTCTCTCTTTTTTTTTTCTAGAAGAATAAAAGATCATCTACCAACTCTATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTATTTCAAAAGGATTGATGAATCCAGAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACGACGGTCCACGGTCAAACATGGCACGCCGGCCGGCTGTTCGCCGGCCGGCGACGATCCACCGGCGGCGATCGATCAGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGCCTGCGGAGAAAGGAGAGGCGAAATGGTGGCTGtg ] [-] EMBL CF310067 [ ATCGATCAGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGCCTGCGGAGAAAGGAGAGG ] [-] EMBL CF310370 [ GATCAGTAGCACCGGTAGACGACGTAGTTG TCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGCCTGCGGAGAAAGGAGAGG ] consensusID : consensus_8860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTCTTTTTGAGCCAAACAAGACCAGATATGTACTAGTATAATCCCTCGTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAAATTACCATCTCTCTCTCTTTTTTTTTTTCTAAAAAAATAAAAAATCATCTACCAACTCTATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTATTTCAAAAGGATTGATGAATCCAAAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACAACGGTCCAC] [+] EMBL CF291435 [TTTTTTTTTTTTTTTTTTTTTTCTTTTTGAGCCAAACAAGACCAGATATGTACTAGTATAATCCCTCGTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAAATTACCATCTCTCTCTCTTTTTTTTTTTCTAAAAAAATAAAAAATCATCTACCAACTCTATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTATTTCAAAAGGATTGATGAATCCAAAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACAACGGTCCAC] consensusID : consensus_8860#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [AGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTTTTTCTACTCCTTCATCCATG] [-] EMBL CF291434 [AGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTTTTTCTACTCCTTCATCCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8860#0 TTTTTTTTTTTTGTTTTTACTAGTATAATCCCTCTTTCAGTATTCACTGATTGATTAGTT 60 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 GGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACC 120 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 AAGATTACCATCTCTCTCTCTTTTTTTTTCTGGAAGAATAAAAGATCATCTACCAACTCT 180 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 ATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTACTTCAAAAGGAT 240 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 TGATGAATCCAGAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACA 300 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 CACGACGGTCCACGGTCAAACATGGCACGCCGGCCGGCTGTTCGCCGGCCGGCGACGATC 360 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 -------TTTTTTTTTTTTTTTTTTTTTTCTTTTTGAGCCAAACAAGACCAGATATGTAC 53 consensus_8860#0 CACCGGCGGCGATCGATCAGTAG-CACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGC 419 consensus_8860#2 ------------------AGTAG-CACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGC 41 consensus_8860#1 TAGTATAATCCCTCGTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAAC 113 **** *** * * ** * * * * *** * consensus_8860#0 GGCCGGTGGCA-------GATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAA 472 consensus_8860#2 GGCCGGTGGCA-------GATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAA 94 consensus_8860#1 AGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAAATTACCATCTCTCTCTC 173 * ** *** * * ** * * ** * * consensus_8860#0 CCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCC 532 consensus_8860#2 CCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCC 154 consensus_8860#1 TTTTTTTTTTTCTAAAAAAATAAAAAATCATCTACCAACTCTATA--TATCATATGATCG 231 *** ** * * * * * * * * ** * * * consensus_8860#0 CATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGA-GAAGAAGAAGAAGAG 591 consensus_8860#2 CATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGA-GAAGAAGAAGAAGAG 213 consensus_8860#1 AACCCTGGAAAAACCCAGCAAGATTGCTACTATTTCAAAAGGATTGATGAATCCAAAGAG 291 * * * * * * ** * *** * ** * * * ** *** ***** consensus_8860#0 CCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGC 651 consensus_8860#2 CCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTTTTTCTACTCCTTCATCCATG-- 271 consensus_8860#1 GAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACAACGGTCCAC--- 348 * ** * *** * * ** * * consensus_8860#0 CTGCGGAGAAAGGAGAGGCGAAATGGTGGCTGNGGCTTTGCT 693 consensus_8860#2 ------------------------------------------ consensus_8860#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||