Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8863 cluster # 8863       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8863#0 length = 1647 sequences # 2  
consensus_8863#1 length = 680 sequences # 1  
consensus_8863#2 length = 649 sequences # 2  
consensus_8863#3 length = 77 sequences # 1  

consensusID : consensus_8863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1647
fasta sequence
                              [TCTTCTCTCGTCGTCGCGTCGCGCGCGGGCGGCGAGGCGAGGGCGTCGCGATTCCTCCTCTTTCAAATACTCCCACGGCGAGGACCGCGGCGAGGGCGCGCGGGCCATTGCTGCTGCTTCTTCTGCTGCTGCGTGTGTGTGGGTGAGACCTGAGAGGATGGGAGCGGAGGCGGTGAGGGTGCTGGTGGTGGACGACTCGCCGGTGGACAGGCGGGTCGTGGAGCTGCTTCTCCGGGCGCACTGCGGCGGCGGCGGCGGCGCCGCCGCCGGCGAGGCGGCTCCGTTCCACGTCACCGCCGTGGACAGCGGCAAGAAGGCGATGGAGCTGCTCGGCCGGCGGCGGGGGGACCGGGACCACCTCACCCCATCCTCTCCGGCGGCGGCGGCGGCGGCCAACGATCAAGCGATCGACATCGTGCTGACCGACTACTGCATGCCGGAGATGACAGGATACGATCTTCTCAAAGCCATCAAGGCGTTGGGGTCGCCGAATCCGATCCCGGTGGTGGTCATGTCGTCGGAGAATGAGCCCCAGAGGATCAGCAGATGCTTGACAGCCGGTGCCGAGGATTTCATCCTTAAGCCTCTCAAGATGAACGATGTCCAGCGCCTCCGGAAATGCTCCGGCGCCACCAGGCCGAAGTCCGCCGTCGCCGGAGACGATGACCGGTGCTGCAACACGGCCAAGAAGGCGGCGGCGGCGGCCGCAGCCACACCGGAGCAGCAGCAGCAGCAGCAGAGATCGTCGCACCTGGCAGGACTAGCCATGGTGATGAATGCATCCAGCTTCGAGGTGTCGCACTACTTCCAGCTCATCTTCAAGCTCATCCTGCTCGCCTACGCCGTGCTGTGCCTCAGCCAGCTCCTGCACAGATGGTCCAATGGCAGCAGCCTCCTCTCCCTGTGGTGCGCATGAATTCAAGAAATTAAATCAAATCGACGATCCAGAAGGCTGGATTGATTAATTTCCCATTATCGATGAAAAAAATTGAAAAAAAAAGAGAGATGGATGAAGACTCAGTGGCATAGCGTGGATTTATCCGAAACTGAAACCTCTTCATCAAGCAAGAGTGCAGCTAAGGTGGACTAATTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTAATTCAGCTATAATATAATTTTCAACAGCCATGCATGCAGCAGCAGCTAAGATGTGATCTTTCTAGGGGTAGATTTGTTACTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCAGGTTATTAATTATTTTCAGAGTTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATTATTTTGCTGAGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAATTTGCTCATTTGTATAAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGATCTCGATTTGATACGCTGATGCAACTGTCCGGAGAAGCTTCTGCTTCTCTCTCTCTCCCAAGATGTGTTTTTTTTTTCTTCTTTTTTTTCGCTCTCTTTCTCTCTGGGTGGGTGGACGTAGACGTCCACCTGCTCTGCACCTCACGCTGAATGAGTTGACCGGATCTCCCGTATTATATATCGTAATCTTGTTAAATGTTAAGGGAGAAAGGAGAACAGTG]

[+] EMBL AK070645             [TCTTCTCTCGTCGTCGCGTCGCGCGCGGGCGGCGAGGCGAGGGCGTCGCGATTCCTCCTCTTTCAAATACTCCCACGGCGAGGACCGCGGCGAGGGCGCGCGGGCCATTGCTGCTGCTTCTTCTGCTGCTGCGTGTGTGTGGGTGAGACCTGAGAGGATGGGAGCGGAGGCGGTGAGGGTGCTGGTGGTGGACGACTCGCCGGTGGACAGGCGGGTCGTGGAGCTGCTTCTCCGGGCGCACTGCGGCGGCGGCGGCGGCGCCGCCGCCGGCGAGGCGGCTCCGTTCCACGTCACCGCCGTGGACAGCGGCAAGAAGGCGATGGAGCTGCTCGGCCGGCGGCGGGGGGACCGGGACCACCTCACCCCATCCTCTCCGGCGGCGGCGGCGGCGGCCAACGATCAAGCGATCGACATCGTGCTGACCGACTACTGCATGCCGGAGATGACAGGATACGATCTTCTCAAAGCCATCAAGGCGTTGGGGTCGCCGAATCCGATCCCGGTGGTGGTCATGTCGTCGGAGAATGAGCCCCAGAGGATCAGCAGATGCTTGACAGCCGGTGCCGAGGATTTCATCCTTAAGCCTCTCAAGATGAACGATGTCCAGCGCCTCCGGAAATGCTCCGGCGCCACCAGGCCGAAGTCCGCCGTCGCCGGAGACGATGACCGGTGCTGCAACACGGCCAAGAAGGCGGCGGCGGCGGCCGCAGCCACACCGGAGCAGCAGCAGCAGCAGCAGAGATCGTCGCACCTGGCAGGACTAGCCATGGTGATGAATGCATCCAGCTTCGAGGTGTCGCACTACTTCCAGCTCATCTTCAAGCTCATCCTGCTCGCCTACGCCGTGCTGTGCCTCAGCCAGCTCCTGCACAGATGGTCCAATGGCAGCAGCCTCCTCTCCCTGTGGTGCGCATGAATTCAAGAAATTAAATCAAATCGACGATCCAGAAGGCTGGATTGATTAATTTCCCATTATCGATGAAAAAAATTGAAAAAAAAAGAGAGATGGATGAAGACTCAGTGGCATAGCGTGGATTTATCCGAAACTGAAACCTCTTCATCAAGCAAGAGTGCAGCTAAGGTGGACTAATTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTAATTCAGCTATAATATAATTTTCAACAGCCATGCATGCAGCAGCAGCTAAGATGTGATCTTTCTAGGGGTAGATTTGTTACTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCAGGTTATTAATTATTTTCAGAGTTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATTATTTTGCTGAGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAATTTGCTCATTTGTATAAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGATCTCGATTTGATACGCTGATGCAACTGTCCGGAGAAGCTTCTGCTTCTCTCTCTCTCCCAAGATGTGTTTTTTTTTTCTTCTTTTTTTTCGCTCTCTTTCTCTCTGGGTGGGTGGACGTAGACGTCCACCTGCTCTGCACCTCACGCTGAATGAGTTGACCGGATCTCCCGTATTATATATCGTAATCTTGTTAAATGTTAAGGGAGAAAGGAGAACAGTG]
[+] EMBL AK069453             [                            GCGGCGAGGCGAGGGCGTCGCGATTCCTCCTCTTTCAAATACTCCCACGGCGAGGACCGCGGCGAGGGCGCGCGGGCCATTGCTGCTGCTTCTTCTGCTGCTGCGTGTGTGTGGGTGAGACCTGAGAGGATGGGAGCGGAGGCGGTGAGGGTGCTGGTGGTGGACGACTCGCCGGTGGACAGGCGGGTCGTGGAGCTGCTTCTCCGGGCGCACTGCGGCGGCGGCGGCGGCGCCGCCGCCGGCGAGGCGGCTCCGTTCCACGTCACCGCCGTGGACAGCGGCAAGAAGGCGATGGAGCTGCTCGGCCGGCGGCGGGGGGACCGGGACCACCTCACCCCATCCTCTCCGGCGGCGGCGGCGGCGGCCAACGATCAAGCGATCGACATCGTGCTGACCGACTACTGCATGCCGGAGATGACAGGATACGATCTTCTCAAAGCCATCAAGGCGTTGGGGTCGCCGAATCCGATCCCGGTGGTGGTCATGTCGTCGGAGAATGAGCCCCAGAGGATCAGCAGATGCTTGACAGCCGGTGCCGAGGATTTCATCCTTAAGCCTCTCAAGATGAACGATGTCCAGCGCCTCCGGAAATGCTCCGGCGCCACCAGGCCGAGGTCCGCCGTCGCCGGAGACGATGACCGGTGCTGCAACACGGCCAAGAAGGCGGCGGCGGCGGCCGCAGCCACACCGGAGCAGCAGCAGCAGCAGCAGAGATCGTCGCACCTGGCAGGACTAGCCATGGTGATGAATGCATCCAGCTTCGAGGTGTCGCACTACTTCCAGCTCATCTTCAAGCTCATCCTGCTCGCCTACGCCGTGCTGTGCCTCAGCCAGCTCCTGCACAGATGGTCCAATGGCAGCAGCCTCCTCTCCCTGTGGTGCGCATGAATTCAAGAAATTAAATCAAATCGACGATCCAGAAGGCTGGATTGATTAATTTCCCATTATCGATGAAAAAAATTGAAAAAAAAAGAGAGATGGATGAAGACTCAGTGGCATAGCGTGGATTTATCCGAAACTGAAACCTCTTCATCAAGCAAGAGTGCAGCTAAGGTGGACTAATTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTAATTCAGCTATAATATAATTTTCAACAGCCATGCATGCAGCAGCAGCTAAGATGTGATCTTTCTAGGGGTAGATTTGTTACTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCAGGTTATTAATTATTTTCAGAGGTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATTATTTTGCTGAGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAATTTGCTCATTTGTATAAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAAT                                                                                                                                                                                                                                  ]


>consensus_8863#0 TCTTCTCTCGTCGTCGCGTCGCGCGCGGGCGGCGAGGCGAGGGCGTCGCGATTCCTCCTC TTTCAAATACTCCCACGGCGAGGACCGCGGCGAGGGCGCGCGGGCCATTGCTGCTGCTTC TTCTGCTGCTGCGTGTGTGTGGGTGAGACCTGAGAGGATGGGAGCGGAGGCGGTGAGGGT GCTGGTGGTGGACGACTCGCCGGTGGACAGGCGGGTCGTGGAGCTGCTTCTCCGGGCGCA CTGCGGCGGCGGCGGCGGCGCCGCCGCCGGCGAGGCGGCTCCGTTCCACGTCACCGCCGT GGACAGCGGCAAGAAGGCGATGGAGCTGCTCGGCCGGCGGCGGGGGGACCGGGACCACCT CACCCCATCCTCTCCGGCGGCGGCGGCGGCGGCCAACGATCAAGCGATCGACATCGTGCT GACCGACTACTGCATGCCGGAGATGACAGGATACGATCTTCTCAAAGCCATCAAGGCGTT GGGGTCGCCGAATCCGATCCCGGTGGTGGTCATGTCGTCGGAGAATGAGCCCCAGAGGAT CAGCAGATGCTTGACAGCCGGTGCCGAGGATTTCATCCTTAAGCCTCTCAAGATGAACGA TGTCCAGCGCCTCCGGAAATGCTCCGGCGCCACCAGGCCGAAGTCCGCCGTCGCCGGAGA CGATGACCGGTGCTGCAACACGGCCAAGAAGGCGGCGGCGGCGGCCGCAGCCACACCGGA GCAGCAGCAGCAGCAGCAGAGATCGTCGCACCTGGCAGGACTAGCCATGGTGATGAATGC ATCCAGCTTCGAGGTGTCGCACTACTTCCAGCTCATCTTCAAGCTCATCCTGCTCGCCTA CGCCGTGCTGTGCCTCAGCCAGCTCCTGCACAGATGGTCCAATGGCAGCAGCCTCCTCTC CCTGTGGTGCGCATGAATTCAAGAAATTAAATCAAATCGACGATCCAGAAGGCTGGATTG ATTAATTTCCCATTATCGATGAAAAAAATTGAAAAAAAAAGAGAGATGGATGAAGACTCA GTGGCATAGCGTGGATTTATCCGAAACTGAAACCTCTTCATCAAGCAAGAGTGCAGCTAA GGTGGACTAATTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTA ATTCAGCTATAATATAATTTTCAACAGCCATGCATGCAGCAGCAGCTAAGATGTGATCTT TCTAGGGGTAGATTTGTTACTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCAGGTT ATTAATTATTTTCAGAGTTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATTATTT TGCTGAGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAATTTGCTCATTTGTATAAAGG GGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGATCTCGATTTGATAC GCTGATGCAACTGTCCGGAGAAGCTTCTGCTTCTCTCTCTCTCCCAAGATGTGTTTTTTT TTTCTTCTTTTTTTTCGCTCTCTTTCTCTCTGGGTGGGTGGACGTAGACGTCCACCTGCT CTGCACCTCACGCTGAATGAGTTGACCGGATCTCCCGTATTATATATCGTAATCTTGTTA AATGTTAAGGGAGAAAGGAGAACAGTG



consensusID : consensus_8863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence
                              [TCAACCCCTCCGGGGCCATAGCGTGGAGTTTCCGGAACACGAACCCTCTTTCTCCAAGCAAGAGTCCAGCTAAGGTGGACTCCTTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTAATTCAGCCTATAATATAATTTTCAACAGCCATGCATGCAGCAGCAGCTAAGATGTGATCTTTCTAGGGGTAGATTTGTTCCTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCAGGTTATTAATTATTTTCAGAGGTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATTATTTTGCTGGGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAATTTGCTCATTTGTATAAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGATCTCGATTTGATACGCTGATGCAACTGTCCGGAGAAGCTTCTGCTTCTCTCTCTCTCTCTCTCTCTCCCAAGATGTGTTTTTTTTTCTTCTTTTTTTTCGCTCTCTTTCTCTCTGGGTGGGTGGACGTAGACGTCCACCTGCTCTGCACCTCACGCTGAATGAGTTGACCGGATCTCCCGTATTATATATCGTAATCTTGTTAAATGTTAAGGGAGAAAGGAGAACAGTGTATGGTGATCATCTTTGATTGCAAAAAAAA]

[-] EMBL CA760905             [TCAACCCCTCCGGGGCCATAGCGTGGAGTTTCCGGAACACGAACCCTCTTTCTCCAAGCAAGAGTCCAGCTAAGGTGGACTCCTTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTAATTCAGCCTATAATATAATTTTCAACAGCCATGCATGCAGCAGCAGCTAAGATGTGATCTTTCTAGGGGTAGATTTGTTCCTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCAGGTTATTAATTATTTTCAGAGGTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATTATTTTGCTGGGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAATTTGCTCATTTGTATAAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGATCTCGATTTGATACGCTGATGCAACTGTCCGGAGAAGCTTCTGCTTCTCTCTCTCTCTCTCTCTCTCCCAAGATGTGTTTTTTTTTCTTCTTTTTTTTCGCTCTCTTTCTCTCTGGGTGGGTGGACGTAGACGTCCACCTGCTCTGCACCTCACGCTGAATGAGTTGACCGGATCTCCCGTATTATATATCGTAATCTTGTTAAATGTTAAGGGAGAAAGGAGAACAGTGTATGGTGATCATCTTTGATTGCAAAAAAAA]


>consensus_8863#1 TCAACCCCTCCGGGGCCATAGCGTGGAGTTTCCGGAACACGAACCCTCTTTCTCCAAGCA AGAGTCCAGCTAAGGTGGACTCCTTGGATGCATGATGATCTCCATCCCAGCTAAGCATGG GGGTTCTTAATTAATTCAGCCTATAATATAATTTTCAACAGCCATGCATGCAGCAGCAGC TAAGATGTGATCTTTCTAGGGGTAGATTTGTTCCTTATTTGTTCTTAAATTCTCAAGAGG ATTCTAACCAGGTTATTAATTATTTTCAGAGGTTTTTAAGTGGTACTATACTACTACTGC TACTTAGATTATTTTGCTGGGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAATTTGCT CATTTGTATAAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGA TCTCGATTTGATACGCTGATGCAACTGTCCGGAGAAGCTTCTGCTTCTCTCTCTCTCTCT CTCTCTCCCAAGATGTGTTTTTTTTTCTTCTTTTTTTTCGCTCTCTTTCTCTCTGGGTGG GTGGACGTAGACGTCCACCTGCTCTGCACCTCACGCTGAATGAGTTGACCGGATCTCCCG TATTATATATCGTAATCTTGTTAAATGTTAAGGGAGAAAGGAGAACAGTGTATGGTGATC ATCTTTGATTGCAAAAAAAA



consensusID : consensus_8863#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 649
fasta sequence
                              [CTACTTCCAGCTATCTTCAAGCTCATCCTGCTTGCTTACGCCGTGCTGTGCCTCAGCCAGCTCCTCCACAGATGGTCCAATGGCAGCAGCCTCCTCTCCCTGTGGTGCGCATGAATTCAAGAAATTAAATCAAATCGACGATCCAGAAGGCCGGATTGATTAATTTCCCATTATCGATGAAAAAAAATTGAAAAAAAAAGAGAGATGGATGAAGACTCAGTGGCATAGCGTGGATTTATCCGAAACTGAAACCTCTTCATCAAGCAAGAGTGCAGCTAAGGTGGACTAATTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTAATTCAGCTATAATATAATTTTCAACAGCCA-TGCATGCAGCAGCAGCTAAGATGTGATCTTTCTAGGGGTAGATTTGTTACTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCAGGTTATTAATTATTTTCAGAGGTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATTATTTTGCTGGGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAATTTGCTCATTTGTATAAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGATCTCGATTTGATAAAAAAAAAAAA]

[-] EMBL CA763160             [CTACTTCCAGCTATCTTCAAGCTCATCCTGCTTGCTTACGCCGTGCTGTGCCTCAGCCAGCTCCTCCACAGATGGTCCAATGGCAGCAGCCTCCTCTCCCTGTGGTGCGCATGAATTCAAGAAATTAAATCAAATCGACGATCCAGAAGGCCGGATTGATTAATTTCCCATTATCGATGAAAAAAAATTGAAAAAAAAAGAGAGATGGATGAAGACTCAGTGGCATAGCGTGGATTTATCCGAAACTGAAACCTCTTCATCAAGCAAGAGTGCAGCTAAGGTGGACTAATTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTAATTCAGCTATAATATAATTTTCAACAGCCA TGCATGCAGCAGCAGCTAAGATGTGATCTTTCTAGGGGTAGATTTGTTACTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCAGGTTATTAATTATTTTCAGAGGTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATTATTTTGCTGGGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAATTTGCTCATTTGTATAAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGATCTCGATTTGATAAAAAAAAAAAA]
[-] EMBL CB967000             [                                                                                                                                ATCAAATCGACGATCCAGAAGGCCGGATTGATTAATTTCCCCTTATCGATGAAAAAAAATTGAAAAAAAAAGAGAGATGGATGAAGACTCAGTGGCATAGCGTGGATTTATCCGAAACTGAAACCTCTTCATCAAGCCAGAGTGCAGCTAAGGTGGACTAATTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTAATTCAGCTATAATATAATTTTCAACAGCCACTGCATGCAGCAGCAGCTAAGATGTGATCTTTCTAGGGGTAGATTTGTTACTTATTTGTTCTTAAATTCTCCAGAGGATTCTAACCCGGTTATTAATTATTTTCAGAGGTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATTATTTTGCTGGGAGAGAAAAGAGTACCCGTCCCGTAGCCCCCCCATTTGCTCATTTGTATAAAGGGGAACGCCTGATTTGAGTGGGCATCTGGT                                         ]


>consensus_8863#2 CTACTTCCAGCTATCTTCAAGCTCATCCTGCTTGCTTACGCCGTGCTGTGCCTCAGCCAG CTCCTCCACAGATGGTCCAATGGCAGCAGCCTCCTCTCCCTGTGGTGCGCATGAATTCAA GAAATTAAATCAAATCGACGATCCAGAAGGCCGGATTGATTAATTTCCCATTATCGATGA AAAAAAATTGAAAAAAAAAGAGAGATGGATGAAGACTCAGTGGCATAGCGTGGATTTATC CGAAACTGAAACCTCTTCATCAAGCAAGAGTGCAGCTAAGGTGGACTAATTGGATGCATG ATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTAATTCAGCTATAATATAATTTT CAACAGCCATGCATGCAGCAGCAGCTAAGATGTGATCTTTCTAGGGGTAGATTTGTTACT TATTTGTTCTTAAATTCTCAAGAGGATTCTAACCAGGTTATTAATTATTTTCAGAGGTTT TTAAGTGGTACTATACTACTACTGCTACTTAGATTATTTTGCTGGGAGAGAAAAGAGTAG CAGTACAGTAGCACCACAATTTGCTCATTTGTATAAAGGGGAACGCATGATTTGAGTGGG CATCTGGTGTCGTTTTTAATCCTGATCTCGATTTGATAAAAAAAAAAAA



consensusID : consensus_8863#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 77
fasta sequence
                              [ACCAGATGCCCACTCAAATCATGGCGTTCCCCTTTTATACAAATGGAGCAAATGCTGGGGGCTACTGGTACTGGCGT]

[+] EMBL CB965758             [ACCAGATGCCCACTCAAATCATGGCGTTCCCCTTTTATACAAATGGAGCAAATGCTGGGGGCTACTGGTACTGGCGT]


>consensus_8863#3 ACCAGATGCCCACTCAAATCATGGCGTTCCCCTTTTATACAAATGGAGCAAATGCTGGGG GCTACTGGTACTGGCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8863#0      TCTTCTCTCGTCGTCGCGTCGCGCGCGGGCGGCGAGGCGAGGGCGTCGCGATTCCTCCTC 60
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      TTTCAAATACTCCCACGGCGAGGACCGCGGCGAGGGCGCGCGGGCCATTGCTGCTGCTTC 120
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      TTCTGCTGCTGCGTGTGTGTGGGTGAGACCTGAGAGGATGGGAGCGGAGGCGGTGAGGGT 180
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      GCTGGTGGTGGACGACTCGCCGGTGGACAGGCGGGTCGTGGAGCTGCTTCTCCGGGCGCA 240
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      CTGCGGCGGCGGCGGCGGCGCCGCCGCCGGCGAGGCGGCTCCGTTCCACGTCACCGCCGT 300
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      GGACAGCGGCAAGAAGGCGATGGAGCTGCTCGGCCGGCGGCGGGGGGACCGGGACCACCT 360
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      CACCCCATCCTCTCCGGCGGCGGCGGCGGCGGCCAACGATCAAGCGATCGACATCGTGCT 420
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      GACCGACTACTGCATGCCGGAGATGACAGGATACGATCTTCTCAAAGCCATCAAGGCGTT 480
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      GGGGTCGCCGAATCCGATCCCGGTGGTGGTCATGTCGTCGGAGAATGAGCCCCAGAGGAT 540
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      CAGCAGATGCTTGACAGCCGGTGCCGAGGATTTCATCCTTAAGCCTCTCAAGATGAACGA 600
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      TGTCCAGCGCCTCCGGAAATGCTCCGGCGCCACCAGGCCGAAGTCCGCCGTCGCCGGAGA 660
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      CGATGACCGGTGCTGCAACACGGCCAAGAAGGCGGCGGCGGCGGCCGCAGCCACACCGGA 720
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      GCAGCAGCAGCAGCAGCAGAGATCGTCGCACCTGGCAGGACTAGCCATGGTGATGAATGC 780
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      ATCCAGCTTCGAGGTGTCGCACTACTTCCAGCTCATCTTCAAGCTCATCCTGCTCGCCTA 840
consensus_8863#2      ---------------------CTACTTCCAGCT-ATCTTCAAGCTCATCCTGCTTGCTTA 38
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      CGCCGTGCTGTGCCTCAGCCAGCTCCTGCACAGATGGTCCAATGGCAGCAGCCTCCTCTC 900
consensus_8863#2      CGCCGTGCTGTGCCTCAGCCAGCTCCTCCACAGATGGTCCAATGGCAGCAGCCTCCTCTC 98
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      CCTGTGGTGCGCATGAATTCAAGAAATTAAATCAAATCGACGATCCAGAAGGCTGGATTG 960
consensus_8863#2      CCTGTGGTGCGCATGAATTCAAGAAATTAAATCAAATCGACGATCCAGAAGGCCGGATTG 158
consensus_8863#1      ------------------------------------------------------------
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      ATTAATTTCCCATTATCGATGAAAAAAA-TTGAAAAAAAAAGAGAGATGGATGAAGACTC 1019
consensus_8863#2      ATTAATTTCCCATTATCGATGAAAAAAAATTGAAAAAAAAAGAGAGATGGATGAAGACTC 218
consensus_8863#1      --------------------------------------------------TCAACCCCTC 10
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      AGTGGC-ATAGCGTGGATTTATCCGAAACTGAAACCTCTTCATC-AAGCAAGAGTGCAGC 1077
consensus_8863#2      AGTGGC-ATAGCGTGGATTTATCCGAAACTGAAACCTCTTCATC-AAGCAAGAGTGCAGC 276
consensus_8863#1      CGGGGCCATAGCGTGGAGTTTCCGGAACACGAACCCTCTTTCTCCAAGCAAGAGTCCAGC 70
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      TAAGGTGGACTAATTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAA 1137
consensus_8863#2      TAAGGTGGACTAATTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAA 336
consensus_8863#1      TAAGGTGGACTCCTTGGATGCATGATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAA 130
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      TTAATTCAGC-TATAATATAATTTTCAACAGCCATGCATGCAGCAGCAGCTAAGATGTGA 1196
consensus_8863#2      TTAATTCAGC-TATAATATAATTTTCAACAGCCATGCATGCAGCAGCAGCTAAGATGTGA 395
consensus_8863#1      TTAATTCAGCCTATAATATAATTTTCAACAGCCATGCATGCAGCAGCAGCTAAGATGTGA 190
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      TCTTTCTAGGGGTAGATTTGTTACTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCA 1256
consensus_8863#2      TCTTTCTAGGGGTAGATTTGTTACTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCA 455
consensus_8863#1      TCTTTCTAGGGGTAGATTTGTTCCTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCA 250
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      GGTTATTAATTATTTTCAGAGTTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATT 1316
consensus_8863#2      GGTTATTAATTATTTTCAGAGGTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATT 515
consensus_8863#1      GGTTATTAATTATTTTCAGAGGTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATT 310
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      ATTTTGCTGAGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAAT-TTGCTCATTTGTAT 1375
consensus_8863#2      ATTTTGCTGGGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAAT-TTGCTCATTTGTAT 574
consensus_8863#1      ATTTTGCTGGGAGAGAAAAGAGTAGCAGTACAGTAGCACCACAAT-TTGCTCATTTGTAT 369
consensus_8863#3      --------------------ACCAGATGCCCACTCAAATCATGGCGTTCCCCTTTTATAC 40
                                          *  **  *  ** *   * **     ** * * *** ** 

consensus_8863#0      AAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGATCTCGATTT 1435
consensus_8863#2      AAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGATCTCGATTT 634
consensus_8863#1      AAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAATCCTGATCTCGATTT 429
consensus_8863#3      AAATGG-AGCAAATGCT----GGGGGCTACTGGTACTGGCGT------------------ 77
                      *** ** * *  *** *    * ****  *****   *   *                  

consensus_8863#0      GATACGCTGATGCAACTGTCCGGAGAAGCTTCTGCTTCTCTCTCTCTCCCAAGATGTGT- 1494
consensus_8863#2      GATAAAAAAAAAAAA--------------------------------------------- 649
consensus_8863#1      GATACGCTGATGCAACTGTCCGGAGAAGCTTCTGCTTCTCTCTCTCTCTCTCTCTCTCCC 489
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      --------TTTTTTTTTCTTCTTTTTTTTCGCTCTCTTTCTCTCTGGGTGGGTGGACGTA 1546
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      AAGATGTGTTTTTTTTTCTTCTTTTTTTTCGCTCTCTTTCTCTCTGGGTGGGTGGACGTA 549
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      GACGTCCACCTGCTCTGCACCTCACGCTGAATGAGTTGACCGGATCTCCCGTATTATATA 1606
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      GACGTCCACCTGCTCTGCACCTCACGCTGAATGAGTTGACCGGATCTCCCGTATTATATA 609
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      TCGTAATCTTGTTAAATGTTAAGGGAGAAAGGAGAACAGTG------------------- 1647
consensus_8863#2      ------------------------------------------------------------
consensus_8863#1      TCGTAATCTTGTTAAATGTTAAGGGAGAAAGGAGAACAGTGTATGGTGATCATCTTTGAT 669
consensus_8863#3      ------------------------------------------------------------
                                                                                  

consensus_8863#0      -----------
consensus_8863#2      -----------
consensus_8863#1      TGCAAAAAAAA 680
consensus_8863#3      -----------
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)